Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schmidtea_20mediterranea_20[genbank_20GCA_5F000691995.1_202014-05- 30] 12,782 sequences; 700,725,851 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq2828 217 2e-51 seq4321 179 4e-40 >seq2828 Length=37213 Score = 217 bits (240), Expect = 2e-51 Identities = 425/631 (67%), Gaps = 48/631 (8%) Strand=Plus/Plus Query 24116 TAAATGTTTAAACATCAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAA 24175 ||||| ||||||||||||||| || |||||||| || || || || |||| |||||||| Sbjct 28692 TAAATATTTAAACATCAAACAAGCAAAATCGCAATGAAGTCCTTCATCTCGGCTAATTAA 28751 Query 24176 TTCGTTGGA-AAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACG 24234 ||||||| |||| | | ||||||||||| ||||||||||||||||||||||| || | Sbjct 28752 TTCGTTGCTGAAACATAA-TCCGGGCATTAATCCACGCTTTTTAAGCCAAAATATCGATG 28810 Query 24235 CAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTTTCTCCAT 24294 |||| ||| || || ||||| || || || ||||| |||| || ||| |||| Sbjct 28811 CAAAACTACCACTGAAAAATATTCCCTCGACAGCAGCAAATGCAACAACTCTAGTTCCAA 28870 Query 24295 AACCGGCGCTGTCATGT---ATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAG 24351 || || | | || ||||| ||||| | || || || | || || | Sbjct 28871 AAGTGGATTTTTTATCGCTAATCCAACGCAATGCCCATTGAGCTTTTTTCTGAACGCATG 28930 Query 24352 GCATTGTCTCTATAGCATTAAA------------------GAGATAGtttttttC----- 24388 |||| || || || |||||||| |||||| |||||| Sbjct 28931 GCATAGTTTCGATGGCATTAAATAATTTATTCCTTTTTTCGAGATAATTTTTTATGACAA 28990 Query 24389 --------ATTACTATCTTT----------AACATATGTATCAATCAAAAGACTATACAT 24430 |||||| | ||| |||||| | ||| || || ||| |||||| Sbjct 28991 AGAAAACTATTACTTTGTTTCTGTATCAGTAACATAAGAATCGATTAATAGAGAATACAT 29050 Query 24431 TTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAA-ACATCTAGCCTCGGTAA 24489 ||| ||||||||||||||||| || |||||||| | ||| || | || ||| |||| || Sbjct 29051 TTCTGAATGAATGTTTTCAATTGCAATTTGAAAACTGTAAAATGCCTC-AGCTTCGGGAA 29109 Query 24490 TCTGTACTTCTATACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACTGGCTG 24549 | | |||||| | |||| ||| | | ||||||||| || ||||| |||||||| | Sbjct 29110 TTTTCACTTCTTGAATGAATCTTTCGACGAGATTTTCATTGACAATTCCATCACTGGCAG 29169 Query 24550 CAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTTATTCCAAT 24609 ||||||| || | || || | || ||||| ||| || | | ||| ||||| | Sbjct 29170 CAAAAAATGCAAGAACGTGAGTAATGAAATACCGTTCATCGTCATTCATTTTTTTCCAGT 29229 Query 24610 CATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTT 24669 | | |||||| |||| || ||||| | || ||||||||||| | || || | Sbjct 29230 GAGCAAAATCTTTTGATAAATTAACTTCATTTACAGTCCAAAATGAAGATCGAGCTTTAT 29289 Query 24670 TATACATATTCCAGATGTCATGATATTGAAT 24700 || |||| | ||| || || | |||||| || Sbjct 29290 TAAACATTTCCCATATATCTTCATATTGTAT 29320 Score = 147 bits (162), Expect = 3e-30 Identities = 219/308 (71%), Gaps = 2/308 (1%) Strand=Plus/Plus Query 24394 TATCTTTAACATATGTATCAATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGG 24453 |||| ||||||| | ||| || || ||| ||||||||| ||||||||||||||||| | Sbjct 31094 TATCAGTAACATAAGAATCGATTAATAGAGAATACATTTCTGAATGAATGTTTTCAATTG 31153 Query 24454 CCATTTGAAATCCGTAGAA-ACATCTAGCCTCGGTAATCTGTACTTCTATACAAAATCGT 24512 | |||||||| | ||| || | || ||| |||| ||| | |||||| | |||| | Sbjct 31154 CAATTTGAAAACTGTAAAATGCCTC-AGCTTCGGGAATTTTCACTTCTTGAATGAATCTT 31212 Query 24513 TCTGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTT 24572 || | | ||||||||| || ||||| |||||||| |||||||| || | || || | Sbjct 31213 TCGACGAGATTTTCATTGACAATTCCATCACTGGCAGCAAAAAATGCAAGAACGTGAGTA 31272 Query 24573 ATAAAATATTTTTCGTCTGGTGTTAGTTTATTCCAATCATTGATATCTTTAGATATATCC 24632 || ||||| ||| || | | ||| ||||| | | | |||||| |||| || Sbjct 31273 ATGAAATACCGTTCATCGTCATTCATTTTTTTCCAGTGAGCAAAATCTTTTGATAAATTA 31332 Query 24633 ACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTCCAGATGTCATGA 24692 ||||| | || ||||||||||| | || || ||| |||| | ||| || || | | Sbjct 31333 ACTTCATTTACAGTCCAAAATGAAGATCGAGCTTTATTAAACATTTCCCATATATCTTCA 31392 Query 24693 TATTGAAT 24700 ||||| || Sbjct 31393 TATTGTAT 31400 >seq4321 Length=90450 Score = 179 bits (198), Expect = 4e-40 Identities = 527/799 (66%), Gaps = 30/799 (4%) Strand=Plus/Plus Query 53708 ATAGATGCCAGATTACAAACGGCTACCTCATTAGCATCCGCATATTGTATTATCTCAGTG 53767 || || |||| ||| ||||| |||| |||| || | ||||| || || || ||| Sbjct 81357 ATCGAAGCCAAATTGCAAACAGCTATTTCATCAGGAGAACTATATTCTACAATTTCTGTG 81416 Query 53768 CAAAGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCA 53827 || | ||| || || ||||| |||||||||| || ||||| ||| || || || Sbjct 81417 CACAAATTGCTGCATTTGATCGTTCCTAAATGCTGATGATTTGACTTGGCATTGCAGGCG 81476 Query 53828 TCCTTATAAAGAATGAATGGCGTACCAGTTTCAATCTGGGATTCTATAATCGCTTTCCAG 53887 ||||| || || || | || || || ||||| || || || || | || ||||||| Sbjct 81477 TCCTTGTATAGCATATAAGGAGTTCCGGTTTCGATTTGTGAATCGAGGATTTCTTTCCAC 81536 Query 53888 ACGACACGAGCCTTTATTATAGATTTGTATCTCTT----TTCTCTTTCGTATAGTGTATA 53943 | | | ||| |||| || | ||| | || | | || |||| | |||| | ||| Sbjct 81537 AAAATTCTAGC-TTTA--ATCGTTTTATTTCCCATCCCCTTTTCTT-CATATAATTCATA 81592 Query 53944 CAATCGTTCAAACTCGTCTCCCCAAACATTGTCCAA-TCCAGGACATTCATCCGGACACA 54002 | | ||||||| |||||||| |||| || ||||| ||||| || || || Sbjct 81593 GAGTTTGTCAAACTTTTCTCCCCAG-CATTCATGAAGTCCAGCACATTTATGAGGGTCCA 81651 Query 54003 TCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAG 54062 |||| | ||| | || ||| | ||||||||||| || | ||| |||||||| | || Sbjct 81652 TCAATGTCCAATTCCCATCACTTTGAACTCGTTTCATGAATAAATCTGGAATCCACAAAG 81711 Query 54063 CTATAAATAGATCTCTGGTTCTATGTTCCTCGTTTC--CTGTATTCTTTTTA---AGATC 54117 | ||||| |||||| | | || ||| ||| || | |||||| | || Sbjct 81712 CGCAAAATAAATCTCTAGCT-----TTTTTCGATTCATCTCCGTGGTTTTTACGCAATTC 81766 Query 54118 GAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGTCATAACTCCAGGCCG 54177 | || ||| || ||||||||||| || || | || |||| | | || || || Sbjct 81767 CAAAAATTCCAATATGTCAGAATGCCATGGCTCAATATAAATGGCGAATGCACCGGGTCG 81826 Query 54178 TTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAAT 54237 || ||||| || || || | ||| | ||| | | |||| | || | ||||||| | Sbjct 81827 CTTATTTCCACCTTGGTCGACGTAACGAGCTGCATAATTAAATACCTGGAGCATTGGAGT 81886 Query 54238 AATACCATTGGATGCACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATTACT 54297 | ||||| ||| ||||||| || || ||| |||| | || | |||| | Sbjct 81887 TAATCCATTCGATACACCATTTGTTCCATTGATTGGTGATCCAGTCGCTCTAATACAATG 81946 Query 54298 AATTGATAGACCTATCCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATC 54357 || || ||| || || || || |||||| || | || ||| ||| | ||| Sbjct 81947 AACATTTAAACCGATACCACCAGCATATTTAGAAATAAGAGCACATTCTTTAAGAGTACT 82006 Query 54358 ATAGATGCCCTCTATACTATCATCCATCA-TGTTAAGTAGAAAACAGCTAGACATTTGGT 54416 | | || || || ||||| ||||| ||| |||||| ||| ||||| ||||| | | | Sbjct 82007 AAATATTCCATCAATACTGTCATCTTTCATTGTTAA-TAGGAAACAACTAGAGA---GTT 82062 Query 54417 GACGACTAGTT----CCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCA 54472 ||| | || || || ||||||||||| || ||||||||||| |||||||||| || Sbjct 82063 GACCA-TACTTTAACCCAGCATTAAATAATGTTGGAGAAGCGTGTATAAACCATTTCTCT 82121 Query 54473 GAAAGTAGATTGTACGTCT 54491 || | || ||| || |||| Sbjct 82122 GACATTAAATTATAAGTCT 82140 Score = 96.9 bits (106), Expect = 4e-15 Identities = 142/196 (72%), Gaps = 5/196 (3%) Strand=Plus/Plus Query 52909 ATAACTCGGATCTGCTATATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCT 52968 |||| ||| | || | ||||| ||||||| |||||||||||| || || | | || Sbjct 79329 ATAATCCGGTGCAGCAACATGGAAATTCATACTTTGACTTTGATCAATAAACGGAGCTCT 79388 Query 52969 GTCTGCAGCCATTTTTATGATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATA-AACTC 53027 ||| ||||||| ||||||||| | ||| |||||||||||| ||||||| | ||||| Sbjct 79389 GTCGGCAGCCAATTTTATGATAACCGATTGATGAATTTCCCAAACAGTTTTAAATAACTC 79448 Query 53028 GCTTAATATCTTCTGGAAG-GTTTG--TATTCTGAATAGATCCACCATCTACCATAATCC 53084 || || || || ||||| ||| |||| || || || |||| || | ||||| Sbjct 79449 -TTTCATTTCATCGGGAAGACCTTGGATATTTTGTATGGAACCACGATTGGCAATAATGG 79507 Query 53085 TATTCTTGATCTCATC 53100 |||||| || ||||| Sbjct 79508 CATTCTTCATATCATC 79523 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 593626738131360