Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schmidtea_20mediterranea_20[genbank_20GCA_5F000691995.1_202014-05- 30] 12,782 sequences; 700,725,851 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq2828 91.5 2e-13 >seq2828 Length=37213 Score = 91.5 bits (100), Expect = 2e-13 Identities = 182/268 (68%), Gaps = 4/268 (1%) Strand=Plus/Minus Query 116945 TTGTTGAACGCCATCGAGACGATGCCGTGCGTCAAAGAGAAGGCCGAGTGGGCGCTGCGC 117004 || || || |||||||| || ||||| ||||| | | || || | ||||| |||| Sbjct 28955 TTATTTAATGCCATCGAAACTATGCCATGCGTTCAGAAAAAAGCTCAATGGGCATTGCGT 28896 Query 117005 TGGATCGCCGGCAGAGAGGCCGCCTTCGG--CGAGCGCCTGGTGGCCTTCGCGGCCGTCG 117062 ||||| || | | | || | || || | || | | || || || || || |||| Sbjct 28895 TGGATTAGCGATAAAAAATCCACTTTTGGAACTAGAG--TTGTTGCATTTGCTGCTGTCG 28838 Query 117063 AGGGCGTCTTCTTTTCGGGCAGTTTCGCCGCCATATTTTGGCTCAAGAAACGCGGCCTCA 117122 |||| | || || || ||||| || | ||||||||||| || || || || | | Sbjct 28837 AGGGAATATTTTTCAGTGGTAGTTTTGCATCGATATTTTGGCTTAAAAAGCGTGGATTAA 28778 Query 117123 TGCCCGGCCTGACTTTCAGCAACGAGCTCATCTCCAGGGACGAGGGTCTGCATTGCGACT 117182 ||||||| | |||||||||||| | || | | || || || || |||||||| | Sbjct 28777 TGCCCGGATTATGTTTCAGCAACGAATTAATTAGCCGAGATGAAGGACTTCATTGCGATT 28718 Query 117183 TTGCCTGTTTGCTGTTCAAGCATTTGGT 117210 |||| |||||| |||| || |||| || Sbjct 28717 TTGCTTGTTTGATGTTTAAATATTTAGT 28690 Score = 82.4 bits (90), Expect = 8e-11 Identities = 123/175 (70%), Gaps = 0/175 (0%) Strand=Plus/Minus Query 116724 TGAACGACAACGAGCGCCATTTCATCAAGCACGTGCTGGCCTTTTTCGCCGCCAGCGACG 116783 |||| ||| | || || ||||||| | ||||| || || ||||| || ||||| || | Sbjct 29217 TGAATGACGATGAACGGTATTTCATTACTCACGTTCTTGCATTTTTTGCTGCCAGTGATG 29158 Query 116784 GCATCGTCAACGAGAATCTGGTCGAGCGTTTCGCTCAGGAGGTGCAGGTGGCCGAGGCGC 116843 | || ||||| || ||||| ||||| | ||| ||| || ||| | | |||| || Sbjct 29157 GAATTGTCAATGAAAATCTCGTCGAAAGATTCATTCAAGAAGTGAAAATTCCCGAAGCTG 29098 Query 116844 GGTGCTTCTACGGCTTTCAGATCGCCATGGAGAACGTGCACTCGGAAATGTATTC 116898 | || ||| | ||||| || || || || ||| | || || ||||||||||| Sbjct 29097 AGGCATTTTACAGTTTTCAAATTGCAATTGAAAACATTCATTCAGAAATGTATTC 29043 Score = 82.4 bits (90), Expect = 8e-11 Identities = 123/175 (70%), Gaps = 0/175 (0%) Strand=Plus/Minus Query 116724 TGAACGACAACGAGCGCCATTTCATCAAGCACGTGCTGGCCTTTTTCGCCGCCAGCGACG 116783 |||| ||| | || || ||||||| | ||||| || || ||||| || ||||| || | Sbjct 31297 TGAATGACGATGAACGGTATTTCATTACTCACGTTCTTGCATTTTTTGCTGCCAGTGATG 31238 Query 116784 GCATCGTCAACGAGAATCTGGTCGAGCGTTTCGCTCAGGAGGTGCAGGTGGCCGAGGCGC 116843 | || ||||| || ||||| ||||| | ||| ||| || ||| | | |||| || Sbjct 31237 GAATTGTCAATGAAAATCTCGTCGAAAGATTCATTCAAGAAGTGAAAATTCCCGAAGCTG 31178 Query 116844 GGTGCTTCTACGGCTTTCAGATCGCCATGGAGAACGTGCACTCGGAAATGTATTC 116898 | || ||| | ||||| || || || || ||| | || || ||||||||||| Sbjct 31177 AGGCATTTTACAGTTTTCAAATTGCAATTGAAAACATTCATTCAGAAATGTATTC 31123 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 515136880852320