Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schmidtea_20mediterranea_20[genbank_20GCA_5F000691995.1_202014-05- 30] 12,782 sequences; 700,725,851 total letters Query= NC_002188.1 Length=288539 Score E Sequences producing significant alignments: (Bits) Value seq9056 136 7e-27 seq10750 114 2e-20 >seq9056 Length=16402 Score = 136 bits (150), Expect = 7e-27 Identities = 217/309 (70%), Gaps = 2/309 (1%) Strand=Plus/Plus Query 51881 TTAGGATAGCCAGAGCATTATGGTTGTACTATATATCCAAAGGGATAGAATACTTGGATA 51940 ||| ||| ||||| || | |||| |||||| ||||| || || |||| |||||| Sbjct 12314 TTAAGATTGCCAGTGCTCTTTGGTGGTACTACATATCAAAGTTTATCGAATTTATGGATA 12373 Query 51941 CGGTATTTTTCATACTTAGGAAAAAATTTAATCAGGTTAGTTTTCTACACGTATATCATC 52000 | | || ||||| ||| | |||||| | || | |||| || || ||||||| Sbjct 12374 CATTTTTCTTCATTCTTCGAAAAAAAAATTCACAAATATCAATTCTTCATGTTTATCATC 12433 Query 52001 ATTTTACTATGTTTACTCTAGGATGGATAGGTATTAAATGGTTTGCTGGAGGTCAGGCAT 52060 ||||| | |||||| | | | ||||||||| |||||||| | |||||||||| ||| Sbjct 12434 ATTTTTCAATGTTTCCAATTTGGTGGATAGGTGTTAAATGGGTGCCTGGAGGTCAATCAT 12493 Query 52061 TTTTTGGAGCTCAGCTAAATTCTTTTATCCATGTTATTATGTACACTTATTATGGTATGG 52120 | ||||||||| | | ||| ||||| || || | |||||| || || || |||| Sbjct 12494 TCTTTGGAGCTATGATGAATAGCTTTATACACGTGCTGATGTACGTATACTACGGAATGG 12553 Query 52121 CCGCTTGTGGTCCTATGT-TCAGAAAGTATCTATGGTGGAAACGTTATCTTACTATAATG 52179 | | | ||| | || |||| |||| ||| ||||||||||| ||| | |||| | || Sbjct 12554 CAGGTCTTGGAGAAAAGTATCAG-AAGTTTCTGTGGTGGAAACGCTATTTAACTAAACTG 12612 Query 52180 CAGTTGGTA 52188 || ||||| Sbjct 12613 CAACTGGTA 12621 Score = 136 bits (150), Expect = 7e-27 Identities = 217/309 (70%), Gaps = 2/309 (1%) Strand=Plus/Plus Query 51881 TTAGGATAGCCAGAGCATTATGGTTGTACTATATATCCAAAGGGATAGAATACTTGGATA 51940 ||| ||| ||||| || | |||| |||||| ||||| || || |||| |||||| Sbjct 13880 TTAAGATTGCCAGTGCTCTTTGGTGGTACTACATATCAAAGTTTATCGAATTTATGGATA 13939 Query 51941 CGGTATTTTTCATACTTAGGAAAAAATTTAATCAGGTTAGTTTTCTACACGTATATCATC 52000 | | || ||||| ||| | |||||| | || | |||| || || ||||||| Sbjct 13940 CATTTTTCTTCATTCTTCGAAAAAAAAATTCACAAATATCAATTCTTCATGTTTATCATC 13999 Query 52001 ATTTTACTATGTTTACTCTAGGATGGATAGGTATTAAATGGTTTGCTGGAGGTCAGGCAT 52060 ||||| | |||||| | | | ||||||||| |||||||| | |||||||||| ||| Sbjct 14000 ATTTTTCAATGTTTCCAATTTGGTGGATAGGTGTTAAATGGGTGCCTGGAGGTCAATCAT 14059 Query 52061 TTTTTGGAGCTCAGCTAAATTCTTTTATCCATGTTATTATGTACACTTATTATGGTATGG 52120 | ||||||||| | | ||| ||||| || || | |||||| || || || |||| Sbjct 14060 TCTTTGGAGCTATGATGAATAGCTTTATACACGTGCTGATGTACGTATACTACGGAATGG 14119 Query 52121 CCGCTTGTGGTCCTATGT-TCAGAAAGTATCTATGGTGGAAACGTTATCTTACTATAATG 52179 | | | ||| | || |||| |||| ||| ||||||||||| ||| | |||| | || Sbjct 14120 CAGGTCTTGGAGAAAAGTATCAG-AAGTTTCTGTGGTGGAAACGCTATTTAACTAAACTG 14178 Query 52180 CAGTTGGTA 52188 || ||||| Sbjct 14179 CAACTGGTA 14187 Score = 109 bits (120), Expect = 1e-18 Identities = 150/207 (72%), Gaps = 2/207 (1%) Strand=Plus/Plus Query 51983 TTCTACACGTATATCATCATTTTACTATGTTTACTCTAGGATGGATAGGTATTAAATGGT 52042 |||| || || |||||||||| | | |||||| | | | ||||||||| |||||||| Sbjct 15769 TTCTTCATGTTTATCATCATTGTTCAATGTTTCCAATTTGGTGGATAGGTGTTAAATGGG 15828 Query 52043 TTGCTGGAGGTCAGGCATTTTTTGGAGCTCAGCTAAATTCTTTTATCCATGTTATTATGT 52102 | |||||||||| |||| ||||||||| | | ||| ||||| || || | |||| Sbjct 15829 TGCCTGGAGGTCAATCATTCTTTGGAGCTATGATGAATAGCTTTATACACGTGCTGATGT 15888 Query 52103 ACACTTATTATGGTATGGCCGCTTGTGGTCCTATGT-TCAGAAAGTATCTATGGTGGAAA 52161 || || || || ||||| | | ||| | || |||||| || ||| ||||||||| Sbjct 15889 ACGTATACTACGGAATGGCAGGTCTTGGAGAAAAGTATCAGAA-GTTTCTGTGGTGGAAA 15947 Query 52162 CGTTATCTTACTATAATGCAGTTGGTA 52188 || ||| | |||| | |||| ||||| Sbjct 15948 CGCTATTTAACTAAACTGCAACTGGTA 15974 >seq10750 Length=33410 Score = 114 bits (126), Expect = 2e-20 Identities = 196/277 (71%), Gaps = 7/277 (3%) Strand=Plus/Minus Query 189437 ACTCATGATCCTCTATGGAACGCGTCACAAATGCAGATGGTGAGAGAAGGAAAAATGCAT 189496 || ||||| | | ||||||| ||| | ||| |||||||||| || || || |||||||| Sbjct 27305 ACACATGACCATTTATGGAATGCGGCCCAATTGCAGATGGTTAGGGAGGGCAAAATGCAC 27246 Query 189497 AGTTTTTTACGAATGTATTGGGCTAAGAAGATACTTGAATGGACT--AGAA-CACCTGAA 189553 | |||||||| ||||||||||| || ||||| |||||||||||| |||| || | Sbjct 27245 GGGTTTTTACGCATGTATTGGGCGAAAAAGATCCTTGAATGGACTGAAGAAGGGCCGGGT 27186 Query 189554 GACGCTTTGAGTTATAG-TATCTATTTGAACAACAAGTACGAACTAGACGGCACGGATCC 189612 || ||||||| | || |||| |||||| | || |||| || |||||| Sbjct 27185 GAAGCTTTGA-AGAGAGCGATCTGGTTGAACGATCGATATAGTATAGATGGGCGGGATCC 27127 Query 189613 TAACGGATACGTAGGTTGTATGTGGTCTATTTGCGGATTACACGA-TAGAGCGTGGAAAG 189671 || || ||| || ||||||||||||||||| | || || || || ||| | Sbjct 27126 AAATGGGTACACGGGGATCATGTGGTCTATTTGCGGTGTCCATGACCAGGGC-TGGGCTG 27068 Query 189672 AAAGACCGATATTTGGAAAGATAAGATATATGAATTA 189708 | || || |||| || |||||| | || ||||| || Sbjct 27067 AGCGAGCGGTATTCGGTAAGATACGCTACATGAACTA 27031 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 923049296231280