Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schmidtea_20mediterranea_20[genbank_20GCA_5F000691995.1_202014-05- 30] 12,782 sequences; 700,725,851 total letters Query= NC_002331.1 Length=178733 Score E Sequences producing significant alignments: (Bits) Value seq10343 86.0 7e-12 seq7315 86.0 7e-12 seq62 86.0 7e-12 seq12383 82.4 9e-11 seq4061 82.4 9e-11 >seq10343 Length=31290 Score = 86.0 bits (94), Expect = 7e-12 Identities = 159/231 (69%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 42957 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 43016 ||||||||||| || || |||||||||||||| ||| ||||||||||| ||||| | Sbjct 25786 CCTCCTCTTAATCGTAAAACCAAATGCAATGTTGACTCTTTTTGAATATTATAATCTGAT 25727 Query 43017 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGC 43076 | ||| || | || || | ||||| ||||| || || | ||||| ||||| | || Sbjct 25726 AAAGTACGACCATCTTCCAATTGCTTGCCAGCAAAAATCAAACGCTGTTGGTCTGGTGGA 25667 Query 43077 ACGCTCTCCTTGTCCATGATTTTTTG-TTTGAGCGTCGCCACCGTGTCGCTCGATTCCAC 43135 | | || ||| | ||| | |||| ||| | | | | | || || || || Sbjct 25666 ATTC-CTTCTTTATCTTGAATCTTTGATTTAACATTTTCAATAGAATCAGATGACTCAAC 25608 Query 43136 ATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCATTTT 43186 || | || || ||||| || |||| || || |||||||| |||||||| Sbjct 25607 TTCAAGTGTTATAGTTTTCCCTGTTAATGTTTTAACAAAGATCTGCATTTT 25557 >seq7315 Length=10968 Score = 86.0 bits (94), Expect = 7e-12 Identities = 155/224 (69%), Gaps = 2/224 (1%) Strand=Plus/Plus Query 42957 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 43016 || |||||||| || || |||||||| | ||| | |||||||||||| | |||| || | Sbjct 2992 CCACCTCTTAATCGTAAAACCAAATGAAGTGTACATTCCTTTTGAATAATATAATAAGAC 3051 Query 43017 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGC 43076 | ||| || | || |||| || || ||||| || ||||||| || || |||| || Sbjct 3052 AAAGTACGTCCTTCTTCTAATTGTTTGCCAGCAAAAATGAGTCTTTGTTGATCGGGAGGA 3111 Query 43077 ACGCTCTCCTTGTCCATGATTTTTTG-TTTGAGCGTCGCCACCGTGTCGCTCGATTCCAC 43135 | | || ||| | ||| | |||| ||| | | | | | ||||| | ||| | || Sbjct 3112 AATC-CTTCTTTATCTTGAATCTTTGCTTTCACCTTTTCAATGGTGTCACCTGATGCAAC 3170 Query 43136 ATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTT 43179 |||| || || ||||| || || | || || ||||| |||| Sbjct 3171 CTCGAAAGTAATCGTTTTACCGGTCAAAGTTTTCACAAATATTT 3214 >seq62 Length=83120 Score = 86.0 bits (94), Expect = 7e-12 Identities = 146/209 (70%), Gaps = 2/209 (1%) Strand=Plus/Minus Query 42980 ATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTG 43039 ||| |||||| || || |||||||||||||||| | ||| || |||| |||| || Sbjct 2376 ATGTAATGTGGATTCTTTCTGAATATTGTAATCAGATAAAGTTCGTCCGTCTTCTAATTG 2317 Query 43040 CTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTT 43099 || || || || || | ||| ||||| || | || | || || |||| | ||| ||| Sbjct 2316 TTTTCCGGCAAAAATCAATCGTTGCTGATCAGGAGGAATGCCTTCTTTGT-CTTGAATTT 2258 Query 43100 TTG-TTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCG 43158 | | ||| | | | | || ||| ||||| || || | || || ||||| |||| Sbjct 2257 TGGCTTTTACATTTTCAATTGTATCGGAAGATTCAACTTCAAGGGTTATTGTTTTACCCG 2198 Query 43159 TTAGCGTCTTTACAAAGATTTGCATTTTT 43187 | || ||||| ||||| |||||||| ||| Sbjct 2197 TAAGAGTCTTCACAAAAATTTGCATGTTT 2169 >seq12383 Length=19971 Score = 82.4 bits (90), Expect = 9e-11 Identities = 154/224 (69%), Gaps = 2/224 (1%) Strand=Plus/Plus Query 42957 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 43016 || |||||||| || || ||||||| | ||| |||||||||||||| ||||||| | Sbjct 8163 CCACCTCTTAATCGTAAACCCAAATGGAGTGTAGATTCCTTTTGAATATTATAATCAGAC 8222 Query 43017 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGC 43076 | ||| || | || |||| || || ||||| || ||||||| || || |||| || Sbjct 8223 AAAGTACGTCCATCTTCTAATTGTTTGCCAGCAAAAATGAGTCTTTGTTGATCGGGAGGA 8282 Query 43077 ACGCTCTCCTTGTCCATGATTTTTTG-TTTGAGCGTCGCCACCGTGTCGCTCGATTCCAC 43135 | | || ||| | ||| | |||| ||| | | | | | ||||| | ||| | || Sbjct 8283 AATC-CTTCTTTATCTTGAATCTTTGCTTTCACCTTTTCAATGGTGTCACCTGATGCAAC 8341 Query 43136 ATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTT 43179 |||| || || ||||| || | | || || ||||| |||| Sbjct 8342 CTCGAGTGTAATCGTTTTACCGTTCAAAGTTTTCACAAATATTT 8385 >seq4061 Length=86116 Score = 82.4 bits (90), Expect = 9e-11 Identities = 154/224 (69%), Gaps = 2/224 (1%) Strand=Plus/Plus Query 42957 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 43016 || |||||||| || || ||||||| | ||| |||||||||||||| ||||||| | Sbjct 51702 CCACCTCTTAATCGTAAACCCAAATGGAGTGTAGATTCCTTTTGAATATTATAATCAGAC 51761 Query 43017 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGC 43076 | ||| || | || |||| || || ||||| || ||||||| || || |||| || Sbjct 51762 AAAGTACGTCCATCTTCTAATTGTTTGCCAGCAAAAATGAGTCTTTGTTGATCGGGAGGA 51821 Query 43077 ACGCTCTCCTTGTCCATGATTTTTTG-TTTGAGCGTCGCCACCGTGTCGCTCGATTCCAC 43135 | | || ||| | ||| | |||| ||| | | | | | ||||| | ||| | || Sbjct 51822 AATC-CTTCTTTATCTTGAATCTTTGCTTTCACCTTTTCAATGGTGTCACCTGATGCAAC 51880 Query 43136 ATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTT 43179 |||| || || ||||| || | | || || ||||| |||| Sbjct 51881 CTCGAGTGTAATCGTTTTACCGTTCAAAGTTTTCACAAATATTT 51924 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 571726237842960