Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schmidtea_20mediterranea_20[genbank_20GCA_5F000691995.1_202014-05- 30] 12,782 sequences; 700,725,851 total letters Query= NC_002642.1 Length=144575 Score E Sequences producing significant alignments: (Bits) Value seq2828 215 5e-51 seq2867 120 3e-22 >seq2828 Length=37213 Score = 215 bits (238), Expect = 5e-51 Identities = 428/631 (68%), Gaps = 51/631 (8%) Strand=Plus/Plus Query 16213 TAATAAGTGTTTAAACATTATACAAGCAAAATCACAATGCAATCCTTCGTCCCTACTTAT 16272 || ||| | ||||||||| | |||||||||||| ||||| | |||||| || | || || Sbjct 28689 TACTAAATATTTAAACATCAAACAAGCAAAATCGCAATGAAGTCCTTCATCTCGGCTAAT 28748 Query 16273 TAACTCGTT--TGAAAATGTAAGACCTGGCATTAGTCCTCGTTTTTTAATCCAAAATATA 16330 ||| ||||| ||||| ||| || ||||||| ||| || ||||||| ||||||||| Sbjct 28749 TAATTCGTTGCTGAAACA-TAAT-CCGGGCATTAATCCACGCTTTTTAAGCCAAAATATC 28806 Query 16331 GCGGCAAATGAACCAGAAAAGAATATACCTTCAACTGCGGCAAATGCAACCAATCGCTCA 16390 | ||||| |||| || ||||| || || || || ||||||||||| | || Sbjct 28807 GATGCAAAACTACCACTGAAAAATATTCCCTCGACAGCAGCAAATGCAACAACTCTAGTT 28866 Query 16391 CCGTACGTTCTAtttttactttcta-tccattttttagcccaatttgctttttgtttAAC 16449 || | || |||||| | ||| |||| ||||| | ||||||| | ||| Sbjct 28867 CCAAAAGTGGATTTTTTA-TCGCTAATCCAACGCAATGCCCATTGAGCTTTTTTCTGAAC 28925 Query 16450 ACAGTTCATGTTCTCTATTGCATTAAATAA------------------ATAAttttttt- 16490 || ||| | || || ||||||||||| |||||||||| Sbjct 28926 GCATGGCATAGTTTCGATGGCATTAAATAATTTATTCCTTTTTTCGAGATAATTTTTTAT 28985 Query 16491 -----------------CTTTGCT-----ATCTAAAATATAAGTATCTATTAGTAAACTA 16528 ||||| | ||| || ||||| ||| |||| || | | Sbjct 28986 GACAAAGAAAACTATTACTTTGTTTCTGTATCAGTAACATAAGAATCGATTAATAGAGAA 29045 Query 16529 TACATTTCTGAATGAATATTCTCCATTGCTATCTGAAAACCATAAAA-GCATCTAGCTTC 16587 ||||||||||||||||| || || ||||| || ||||||| ||||| || || |||||| Sbjct 29046 TACATTTCTGAATGAATGTTTTCAATTGCAATTTGAAAACTGTAAAATGCCTC-AGCTTC 29104 Query 16588 GGATATTTGTACTTC-AGAGTAAAACCTTTCTGCTAAGTTTTCGTTAACTATTCCATCGC 16646 || |||| ||||| || | || ||||| | | ||||| || || |||||||| | Sbjct 29105 GGGAATTTTCACTTCTTGAAT-GAATCTTTCGACGAGATTTTCATTGACAATTCCATCAC 29163 Query 16647 TAGCTGCAAAAAACGCAAGTATGTGTTTAATAAAAtttttttCGTTATCTGAAAGTTTTA 16706 | || |||||||| ||||| | ||| |||| |||| ||| | || | |||| Sbjct 29164 TGGCAGCAAAAAATGCAAGAACGTGAGTAATGAAATACCGTTCATCGTCATTCATTTTTT 29223 Query 16707 ACCAGTCAGAAAAATCTTTTGATAAATCGACCTCTTCTACAGTCCAAAAAGAAGCAACAG 16766 ||||| || ||||||||||||||||| || || | |||||||||||| |||| || Sbjct 29224 TCCAGTGAGCAAAATCTTTTGATAAATTAACTTCATTTACAGTCCAAAATGAAGATCGAG 29283 Query 16767 CCTTTTTATACATTTTCCATATGTCTTCGTA 16797 | || ||| |||||| |||||| ||||| || Sbjct 29284 CTTTATTAAACATTTCCCATATATCTTCATA 29314 Score = 178 bits (196), Expect = 1e-39 Identities = 220/296 (74%), Gaps = 4/296 (1%) Strand=Plus/Plus Query 16504 AATATAAGTATCTATTAGTAAACTATACATTTCTGAATGAATATTCTCCATTGCTATCTG 16563 || ||||| ||| |||| || | |||||||||||||||||| || || ||||| || || Sbjct 31101 AACATAAGAATCGATTAATAGAGAATACATTTCTGAATGAATGTTTTCAATTGCAATTTG 31160 Query 16564 AAAACCATAAAA-GCATCTAGCTTCGGATATTTGTACTTC-AGAGTAAAACCTTTCTGCT 16621 ||||| ||||| || || |||||||| |||| ||||| || | || ||||| | Sbjct 31161 AAAACTGTAAAATGCCTC-AGCTTCGGGAATTTTCACTTCTTGAAT-GAATCTTTCGACG 31218 Query 16622 AAGTTTTCGTTAACTATTCCATCGCTAGCTGCAAAAAACGCAAGTATGTGTTTAATAAAA 16681 | ||||| || || |||||||| || || |||||||| ||||| | ||| |||| ||| Sbjct 31219 AGATTTTCATTGACAATTCCATCACTGGCAGCAAAAAATGCAAGAACGTGAGTAATGAAA 31278 Query 16682 tttttttCGTTATCTGAAAGTTTTAACCAGTCAGAAAAATCTTTTGATAAATCGACCTCT 16741 | ||| | || | |||| ||||| || ||||||||||||||||| || || Sbjct 31279 TACCGTTCATCGTCATTCATTTTTTTCCAGTGAGCAAAATCTTTTGATAAATTAACTTCA 31338 Query 16742 TCTACAGTCCAAAAAGAAGCAACAGCCTTTTTATACATTTTCCATATGTCTTCGTA 16797 | |||||||||||| |||| ||| || ||| |||||| |||||| ||||| || Sbjct 31339 TTTACAGTCCAAAATGAAGATCGAGCTTTATTAAACATTTCCCATATATCTTCATA 31394 Score = 86.0 bits (94), Expect = 6e-12 Identities = 161/237 (68%), Gaps = 0/237 (0%) Strand=Plus/Plus Query 15949 ATATTCACTAACTCTCTTTTCAAAGAAATTTGTTTTTCCTTCTAATGAAATATTTTCCAT 16008 |||||||| |||| || |||||||| || ||||| || || | ||||||| ||||| Sbjct 28376 ATATTCACCGACTCGTTTCTCAAAGAAGTTAGTTTTCCCATCGATGCAAATATTATCCAT 28435 Query 16009 AAAATCAAAAGGATTTTTTGAACAATAGTATTTATCGCATCCCAATTCCAACAATAATCT 16068 ||||| || || || | || || | || || || |||||||| | || | | Sbjct 28436 GAAATCCAACGGGTTCTCTGTGTTCCAGAACTTGTCACAGCCCAATTCAACCAGCAGCCG 28495 Query 16069 ATCCGCCACAAATTCTATATACTGTTTCATTAAATCACAGTTCATTCCTATTAATTTAAC 16128 || ||||||||||| ||||||| ||| | ||| |||||| || || ||| ||| Sbjct 28496 GTCGGCCACAAATTCAATATACTCACACATCGATTCAGCGTTCATGCCAATCAATGAAAC 28555 Query 16129 AGGGATTGCTTCTGTTAAAAAAtttttttCTATATTAACCGCTTCAATGATTATATC 16185 || | ||| || || | ||| | || || || || ||||| |||| | ||| Sbjct 28556 CGGCAATGCGTCGGTGAGAAATTCCTTCTCGATTCCGACAGCTTCTTTGATCAAATC 28612 >seq2867 Length=150518 Score = 120 bits (132), Expect = 3e-22 Identities = 228/333 (68%), Gaps = 2/333 (1%) Strand=Plus/Plus Query 16463 TCTATTGCATTAAATAAATAAtttttttCTTTGCTATCTAAAATATAAGTATCTATTAGT 16522 || || ||||||||||| | | | ||| || |||| | || ||||| ||| |||| | Sbjct 86903 TCGATGGCATTAAATAATTTACTCTTTGTTTCTGTATCAATAACATAAGAATCGATTAAT 86962 Query 16523 AAACTATACATTTCTGAATGAATATTCTCCATTGCTATCTGAAAACCATAAAA-GCATCT 16581 | || ||||||||||||||| | || || | || ||||||| ||||| || || Sbjct 86963 AGCGAATGCATTTCTGAATGAATGCTTTCAATGGTAATTTGAAAACTGTAAAATGCCTC- 87021 Query 16582 AGCTTCGGATATTTGTACTTCAGAGTAAAACCTTTCTGCTAAGTTTTCGTTAACTATTCC 16641 |||||| | |||| ||||| | || || || | | ||||| || | || || Sbjct 87022 AGCTTCAGGAATTTTGACTTCTTGAAAGAATCTCTCGACAAGATTTTCATTGTCAATCCC 87081 Query 16642 ATCGCTAGCTGCAAAAAACGCAAGTATGTGTTTAATAAAAtttttttCGTTATCTGAAAG 16701 ||| || || || |||| | ||| | ||| |||| |||| | ||| || || | Sbjct 87082 ATCACTGGCAGCGAAAAGGGTAAGGACGTGAGTAATGAAATATCATTCATTGTCATTTAA 87141 Query 16702 TTTTAACCAGTCAGAAAAATCTTTTGATAAATCGACCTCTTCTACAGTCCAAAAAGAAGC 16761 |||| ||||| || ||||| |||||| ||| |||| | || ||| ||||| ||| Sbjct 87142 TTTTTACCAGCGAGCAAAATATTTTGACTAATTAACCTTGTTTAGAGTTCAAAATCAAGA 87201 Query 16762 AACAGCCTTTTTATACATTTTCCATATGTCTTC 16794 | ||| || ||| |||||| |||| | ||||| Sbjct 87202 TAGAGCATTATTAAACATTTCCCATTTATCTTC 87234 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462438102145200