Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schmidtea_20mediterranea_20[genbank_20GCA_5F000691995.1_202014-05- 30] 12,782 sequences; 700,725,851 total letters Query= NC_003027.1 Length=150773 Score E Sequences producing significant alignments: (Bits) Value seq2828 187 2e-42 >seq2828 Length=37213 Score = 187 bits (206), Expect = 2e-42 Identities = 426/635 (67%), Gaps = 51/635 (8%) Strand=Plus/Plus Query 14185 TAGATGTTTAAAAATTAAACACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAG 14244 || || |||||| || ||||| |||||||| |||||||| || ||||||| ||||| | Sbjct 28692 TAAATATTTAAACATCAAACAAGCAAAATCGCAATGAAGTCCTTCATCTCGGCTAATTAA 28751 Query 14245 TTCGTT--TGAAAATGTTAATCCTGGCATCAATCCTCGtttttttAACCAAAATATTGCA 14302 |||||| ||||| |||||| ||||| ||||| || ||||| | ||||||||| | Sbjct 28752 TTCGTTGCTGAAACA--TAATCCGGGCATTAATCCACGCTTTTTAAGCCAAAATATCGAT 28809 Query 14303 GCGAATGATCCGGAAAAGAATATTCCCTCAACTGCAGCAAACGCTATTAATCGTTCTCCA 14362 || || || || ||||||||||| || |||||||| || | | || |||| Sbjct 28810 GCAAAACTACCACTGAAAAATATTCCCTCGACAGCAGCAAATGCAACAACTCTAGTTCCA 28869 Query 14363 AACGATGCTTTTTTGTTCGATA-TCCATTTTCTAGCCCATTCAGAtttttttttAATAAA 14421 || | | |||||| | || || |||| ||||||| || |||||| | || | Sbjct 28870 AAAGTGGATTTTTTAT-CGCTAATCCAACGCAATGCCCATTGAGCTTTTTTCTGAACGCA 28928 Query 14422 ATCCATTGTTTCAATAGCATTAAATAAATG-TTCCTTCTCTTTAG-TACTT--------- 14470 ||| ||||| || ||||||||||| | |||||| | | || || || Sbjct 28929 TGGCATAGTTTCGATGGCATTAAATAATTTATTCCTTTTTTCGAGATAATTTTTTATGAC 28988 Query 14471 ---GAAATGTAT------------GTATCAATAAG-TAAGCT--------------ATAC 14500 |||| ||| |||||| ||| |||| |||| Sbjct 28989 AAAGAAAACTATTACTTTGTTTCTGTATCAGTAACATAAGAATCGATTAATAGAGAATAC 29048 Query 14501 ATTTCAGAGTGTATGTTTTCCATAGCTATCTGAAAACCATAAAAA-CATCTAGCTTCTGA 14559 ||||| || || |||||||| || || || ||||||| ||||| | || |||||| | Sbjct 29049 ATTTCTGAATGAATGTTTTCAATTGCAATTTGAAAACTGTAAAATGCCTC-AGCTTCGGG 29107 Query 14560 CCATTGTACCTCT-GAGTAAAATCTTTCGGCCAAATTTTCATTAACTATACCATCACTAG 14618 || || ||| || | || ||||||| | | ||||||||| || || |||||||| | Sbjct 29108 AATTTTCACTTCTTGAATGAA-TCTTTCGACGAGATTTTCATTGACAATTCCATCACTGG 29166 Query 14619 CTGCAAAAAATGCCAATATGTTTTTAATAAAGTATTGCTCTTCATTGCTGAGTTTTTTCC 14678 | ||||||||||| | | || |||| || || | || || | | | |||||||| Sbjct 29167 CAGCAAAAAATGCAAGAACGTGAGTAATGAAATACCGTTCATCGTCATTCATTTTTTTCC 29226 Query 14679 AATCGGCTAAATCCTTAGAAAGATCTACTTCATCAACTGTCCAAAAACTAGCAACAGCTT 14738 | | || ||||| || || | || ||||||| || |||||||| || ||||| Sbjct 29227 AGTGAGCAAAATCTTTTGATAAATTAACTTCATTTACAGTCCAAAATGAAGATCGAGCTT 29286 Query 14739 TTTTATACATTACCCATATTTCTTTATATAATATA 14773 | ||| ||||| ||||||| |||| |||| |||| Sbjct 29287 TATTAAACATTTCCCATATATCTTCATATTGTATA 29321 Score = 132 bits (146), Expect = 5e-26 Identities = 200/279 (72%), Gaps = 4/279 (1%) Strand=Plus/Plus Query 14497 ATACATTTCAGAGTGTATGTTTTCCATAGCTATCTGAAAACCATAAAAA-CATCTAGCTT 14555 ||||||||| || || |||||||| || || || ||||||| ||||| | || ||||| Sbjct 31125 ATACATTTCTGAATGAATGTTTTCAATTGCAATTTGAAAACTGTAAAATGCCTC-AGCTT 31183 Query 14556 CTGACCATTGTACCTCT-GAGTAAAATCTTTCGGCCAAATTTTCATTAACTATACCATCA 14614 | | || || ||| || | || ||||||| | | ||||||||| || || |||||| Sbjct 31184 CGGGAATTTTCACTTCTTGAATGAA-TCTTTCGACGAGATTTTCATTGACAATTCCATCA 31242 Query 14615 CTAGCTGCAAAAAATGCCAATATGTTTTTAATAAAGTATTGCTCTTCATTGCTGAGTTTT 14674 || || ||||||||||| | | || |||| || || | || || | | | |||| Sbjct 31243 CTGGCAGCAAAAAATGCAAGAACGTGAGTAATGAAATACCGTTCATCGTCATTCATTTTT 31302 Query 14675 TTCCAATCGGCTAAATCCTTAGAAAGATCTACTTCATCAACTGTCCAAAAACTAGCAACA 14734 ||||| | || ||||| || || | || ||||||| || |||||||| || | Sbjct 31303 TTCCAGTGAGCAAAATCTTTTGATAAATTAACTTCATTTACAGTCCAAAATGAAGATCGA 31362 Query 14735 GCTTTTTTATACATTACCCATATTTCTTTATATAATATA 14773 ||||| ||| ||||| ||||||| |||| |||| |||| Sbjct 31363 GCTTTATTAAACATTTCCCATATATCTTCATATTGTATA 31401 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 482268533231760