Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schmidtea_20mediterranea_20[genbank_20GCA_5F000691995.1_202014-05- 30] 12,782 sequences; 700,725,851 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq62 114 1e-20 seq2828 109 5e-19 seq9680 107 2e-18 seq2867 98.7 9e-16 >seq62 Length=83120 Score = 114 bits (126), Expect = 1e-20 Identities = 165/233 (71%), Gaps = 0/233 (0%) Strand=Plus/Plus Query 31189 AAACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACC 31248 ||||||||||||||| || |||||||| || || ||||| || ||| | || |||||| | Sbjct 2169 AAACATGCAAATTTTTGTGAAGACTCTTACGGGTAAAACAATAACCCTTGAAGTTGAATC 2228 Query 31249 GTCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGA 31308 ||||| | | |||| || ||| | ||| ||||| |||||| | || || || Sbjct 2229 TTCCGATACAATTGAAAATGTAAAAGCCAAAATTCAAGACAAAGAAGGCATTCCTCCTGA 2288 Query 31309 CCAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTA 31368 ||||| || | || || || || ||||| || |||||| ||| | ||||| Sbjct 2289 TCAGCAACGATTGATTTTTGCCGGAAAACAATTAGAAGACGGACGAACTTTATCTGATTA 2348 Query 31369 TAACATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGTA 31421 || ||||| |||||||| || | ||||| |||||| |||| | || |||| Sbjct 2349 CAATATTCAGAAAGAATCCACATTACATCTAGTACTTCGACTTCGTGGTGGTA 2401 >seq2828 Length=37213 Score = 109 bits (120), Expect = 5e-19 Identities = 133/179 (74%), Gaps = 2/179 (1%) Strand=Plus/Minus Query 57676 ATTTTATTAAACACGTGTTGGCGTTTTTCGCCGCATCCGATGGTATTGTTAACGAGAATT 57735 |||| |||| ||||| | || ||||| || || ||||| ||||| || || ||| Sbjct 29199 ATTTCATTACTCACGTTCTTGCATTTTTTGCTGCCAGTGATGGAATTGTCAATGAAAATC 29140 Query 57736 TGGTCGAAAGATTTTCACAAGAAGTGCAAGTGACGGAGGCGAGATGC-TTTTACGGATTT 57794 | ||||||||||| ||||||||| || | | || || || || |||||| | ||| Sbjct 29139 TCGTCGAAAGATTCATTCAAGAAGTGAAAATTCCCGAAGCT-GAGGCATTTTACAGTTTT 29081 Query 57795 CAAGTGGCCATTGAAAACGTGCATTCAGAAATGTATTCGCTACTCATCGATACGTACGT 57853 ||| | || ||||||||| | ||||||||||||||||| ||| | |||||| | || || Sbjct 29080 CAAATTGCAATTGAAAACATTCATTCAGAAATGTATTCTCTATTAATCGATTCTTATGT 29022 Score = 109 bits (120), Expect = 5e-19 Identities = 133/179 (74%), Gaps = 2/179 (1%) Strand=Plus/Minus Query 57676 ATTTTATTAAACACGTGTTGGCGTTTTTCGCCGCATCCGATGGTATTGTTAACGAGAATT 57735 |||| |||| ||||| | || ||||| || || ||||| ||||| || || ||| Sbjct 31279 ATTTCATTACTCACGTTCTTGCATTTTTTGCTGCCAGTGATGGAATTGTCAATGAAAATC 31220 Query 57736 TGGTCGAAAGATTTTCACAAGAAGTGCAAGTGACGGAGGCGAGATGC-TTTTACGGATTT 57794 | ||||||||||| ||||||||| || | | || || || || |||||| | ||| Sbjct 31219 TCGTCGAAAGATTCATTCAAGAAGTGAAAATTCCCGAAGCT-GAGGCATTTTACAGTTTT 31161 Query 57795 CAAGTGGCCATTGAAAACGTGCATTCAGAAATGTATTCGCTACTCATCGATACGTACGT 57853 ||| | || ||||||||| | ||||||||||||||||| ||| | |||||| | || || Sbjct 31160 CAAATTGCAATTGAAAACATTCATTCAGAAATGTATTCTCTATTAATCGATTCTTATGT 31102 >seq9680 Length=90248 Score = 107 bits (118), Expect = 2e-18 Identities = 163/232 (70%), Gaps = 0/232 (0%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| ||||| || || || || || || ||||| || || | || ||||| | || Sbjct 41943 ATGCAGATTTTTGTTAAAACCCTAACGGGTAAAACAATTACACTTGAAGTTGAGTCTTCA 41884 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 || | | |||| || ||| | ||| |||||||||||| | || || || || Sbjct 41883 GATACCATTGAAAATGTTAAAGCCAAAATTCAAGACAAGGAAGGCATTCCACCAGATCAA 41824 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 ||| | ||||| |||||||| ||||| || ||||| | || || || || ||| Sbjct 41823 CAGAGACTAATCTTCGCTGGAAAACAATTAGAAGATGGTCGAACATTGTCTGACTACAAC 41764 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGTAGAA 31424 || ||||||||| ||||| ||| ||||||||||||| || || ||| ||| Sbjct 41763 ATCCAAAAAGAAAGTACTCTCCATTTGGTACTTAGACTTAGAGGAGGTGGAA 41712 >seq2867 Length=150518 Score = 98.7 bits (108), Expect = 9e-16 Identities = 163/233 (70%), Gaps = 2/233 (1%) Strand=Plus/Minus Query 57673 GAAATTTTATTAAACACGTGTTGGCGTTTTTCGCCGCATCCGATGGTATTGTTAACGAGA 57732 || |||| |||| ||||| | | ||||||| || ||||| |||| || || | Sbjct 87125 GATATTTCATTACTCACGTCCTTACCCTTTTCGCTGCCAGTGATGGGATTGACAATGAAA 87066 Query 57733 ATTTGGTCGAAAGATTTTCACAAGAAGTGCAAGTGACGGAGGCGAGATGC-TTTTACGGA 57791 || | ||||| ||||| | |||||||| || | | || || || || |||||| | Sbjct 87065 ATCTTGTCGAGAGATTCTTTCAAGAAGTCAAAATTCCTGAAGCT-GAGGCATTTTACAGT 87007 Query 57792 TTTCAAGTGGCCATTGAAAACGTGCATTCAGAAATGTATTCGCTACTCATCGATACGTAC 57851 |||||| | ||||||||| | | |||||||||||| |||||||| | |||||| | || Sbjct 87006 TTTCAAATTACCATTGAAAGCATTCATTCAGAAATGCATTCGCTATTAATCGATTCTTAT 86947 Query 57852 GTGAAGGACAACGACGAGAAACGTAGACTGTTCAACGCGATCGAAACAATGCC 57904 || | || | || || ||| | | || || || |||||||| ||||| Sbjct 86946 GTTATTGATACAGAAACAAAGAGTAAATTATTTAATGCCATCGAAACTATGCC 86894 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445695177673440