Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schmidtea_20mediterranea_20[genbank_20GCA_5F000691995.1_202014-05- 30] 12,782 sequences; 700,725,851 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq2828 232 8e-56 seq4321 163 4e-35 seq2867 105 8e-18 >seq2828 Length=37213 Score = 232 bits (256), Expect = 8e-56 Identities = 430/634 (68%), Gaps = 48/634 (8%) Strand=Plus/Plus Query 33560 TAATAAATGTTTAAACATCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAAT 33619 || ||||| ||||||||||||||| || |||||||| || || || || |||| ||||| Sbjct 28689 TACTAAATATTTAAACATCAAACAAGCAAAATCGCAATGAAGTCCTTCATCTCGGCTAAT 28748 Query 33620 TAATTCGTTAGA-AAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGG 33678 ||||||||| |||| | | ||||||||||| ||||||||||||||||||||||| | Sbjct 28749 TAATTCGTTGCTGAAACATAA-TCCGGGCATTAATCCACGCTTTTTAAGCCAAAATATCG 28807 Query 33679 AAGCGAATGATCCGGAAAAGAAGATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTC 33738 | || || || || || ||||| || || |||||||| |||| || ||| || Sbjct 28808 ATGCAAAACTACCACTGAAAAATATTCCCTCGACAGCAGCAAATGCAACAACTCTAGTTC 28867 Query 33739 CATAACCGGCGCTGTCATGT---ATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACAC 33795 || || || | | || ||||| ||||| | || || || | || | Sbjct 28868 CAAAAGTGGATTTTTTATCGCTAATCCAACGCAATGCCCATTGAGCTTTTTTCTGAACGC 28927 Query 33796 AAGGCATCGTTTCTATGGCATTAAA------------------GAGATAGtttttttC-- 33835 | ||||| ||||| ||||||||||| |||||| |||||| Sbjct 28928 ATGGCATAGTTTCGATGGCATTAAATAATTTATTCCTTTTTTCGAGATAATTTTTTATGA 28987 Query 33836 -----------ATTACTATCTTT----------AACATAAGTATCGATCAAAAGACTATA 33874 |||||| | ||| |||||||| |||||| || ||| ||| Sbjct 28988 CAAAGAAAACTATTACTTTGTTTCTGTATCAGTAACATAAGAATCGATTAATAGAGAATA 29047 Query 33875 CATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAA-ACATCTAGCCTCGG 33933 |||||| ||||||||||||||||| || || ||||| | ||| || | || ||| |||| Sbjct 29048 CATTTCTGAATGAATGTTTTCAATTGCAATTTGAAAACTGTAAAATGCCTC-AGCTTCGG 29106 Query 33934 TAATCTGCACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCATCACTGG 33993 ||| | ||||||| | |||| ||| | | ||||||||| || ||||||||||||| Sbjct 29107 GAATTTTCACTTCTTGAATGAATCTTTCGACGAGATTTTCATTGACAATTCCATCACTGG 29166 Query 33994 CTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTTATTCC 34053 | |||||||| || | || || | || ||||| ||| || | | ||| |||| Sbjct 29167 CAGCAAAAAATGCAAGAACGTGAGTAATGAAATACCGTTCATCGTCATTCATTTTTTTCC 29226 Query 34054 AATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCT 34113 | | | | |||||| |||| || ||||| | || ||||||||||| | || | Sbjct 29227 AGTGAGCAAAATCTTTTGATAAATTAACTTCATTTACAGTCCAAAATGAAGATCGAGCTT 29286 Query 34114 TTTTATACATATTCCAGATGTCATGATATTGGAT 34147 | ||| |||| | ||| || || | |||||| || Sbjct 29287 TATTAAACATTTCCCATATATCTTCATATTGTAT 29320 Score = 161 bits (178), Expect = 1e-34 Identities = 222/308 (72%), Gaps = 2/308 (1%) Strand=Plus/Plus Query 33841 TATCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGG 33900 |||| ||||||||| |||||| || ||| ||||||||| ||||||||||||||||| | Sbjct 31094 TATCAGTAACATAAGAATCGATTAATAGAGAATACATTTCTGAATGAATGTTTTCAATTG 31153 Query 33901 CCATCTGAAATCCGTAGAA-ACATCTAGCCTCGGTAATCTGCACTTCTGTACAAAATCGT 33959 | || ||||| | ||| || | || ||| |||| ||| | ||||||| | |||| | Sbjct 31154 CAATTTGAAAACTGTAAAATGCCTC-AGCTTCGGGAATTTTCACTTCTTGAATGAATCTT 31212 Query 33960 TCTGCTAAATTTTCATTCACTATTCCATCACTGGCTGCAAAAAACGCCAATACATGTTTT 34019 || | | ||||||||| || |||||||||||||| |||||||| || | || || | Sbjct 31213 TCGACGAGATTTTCATTGACAATTCCATCACTGGCAGCAAAAAATGCAAGAACGTGAGTA 31272 Query 34020 ATAAAATATTTTTCGTCTGGTGTTAGTTTATTCCAATCATTGATATCTTTAGATATATCC 34079 || ||||| ||| || | | ||| ||||| | | | |||||| |||| || Sbjct 31273 ATGAAATACCGTTCATCGTCATTCATTTTTTTCCAGTGAGCAAAATCTTTTGATAAATTA 31332 Query 34080 ACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTCCAGATGTCATGA 34139 ||||| | || ||||||||||| | || || ||| |||| | ||| || || | | Sbjct 31333 ACTTCATTTACAGTCCAAAATGAAGATCGAGCTTTATTAAACATTTCCCATATATCTTCA 31392 Query 34140 TATTGGAT 34147 ||||| || Sbjct 31393 TATTGTAT 31400 >seq4321 Length=90450 Score = 163 bits (180), Expect = 4e-35 Identities = 523/797 (66%), Gaps = 32/797 (4%) Strand=Plus/Plus Query 62949 GATGCCAGATTACACACGGCTACCTCATTAGCATCCGCATATTGTATTATCTCAGTGCAA 63008 || |||| ||| || || |||| |||| || | ||||| || || || ||||| Sbjct 81360 GAAGCCAAATTGCAAACAGCTATTTCATCAGGAGAACTATATTCTACAATTTCTGTGCAC 81419 Query 63009 AGATTACTACACTTGATAGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCC 63068 | ||| || || ||||| |||||||||| || ||||| ||| || || || ||| Sbjct 81420 AAATTGCTGCATTTGATCGTTCCTAAATGCTGATGATTTGACTTGGCATTGCAGGCGTCC 81479 Query 63069 TTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGACG 63128 || || || || | ||||| || ||||| || || || || | || ||||||| | Sbjct 81480 TTGTATAGCATATAAGGAGTTCCGGTTTCGATTTGTGAATCGAGGATTTCTTTCCACAAA 81539 Query 63129 ACTCGAGCCTTTATTATAGATTTGT-----ATCTCCTTTCTCTTTCGTATAGAGTATACA 63183 | || ||| |||| || | ||| | ||| ||||| |||| | |||| ||| | Sbjct 81540 ATTCTAGC-TTTA--ATCGTTTTATTTCCCATCCCCTTT-TCTT-CATATAATTCATAGA 81594 Query 63184 ATCGTTCGAACTCGTCTCCCCAAACATTGTCCAA-TCTAGGACATTCATCCGGACACATC 63242 | || |||| |||||||| |||| || || || ||||| || || |||| Sbjct 81595 GTTTGTCAAACTTTTCTCCCCAG-CATTCATGAAGTCCAGCACATTTATGAGGGTCCATC 81653 Query 63243 AACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCT 63302 || | ||| | || ||| | ||||||||||| || | ||| |||||||| | ||| Sbjct 81654 AATGTCCAATTCCCATCACTTTGAACTCGTTTCATGAATAAATCTGGAATCCACAAAGCG 81713 Query 63303 ATAAATAGATCTCTTGTTCTATGTTCCTCGTTTC--CTGTATTCTTTTTA---AGATCGA 63357 ||||| |||||| | | || ||| ||| || | |||||| | || | Sbjct 81714 CAAAATAAATCTCTAGCT-----TTTTTCGATTCATCTCCGTGGTTTTTACGCAATTCCA 81768 Query 63358 GGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTT 63417 || ||| || ||||||||||| || || | || ||||| | | || || || | Sbjct 81769 AAAATTCCAATATGTCAGAATGCCATGGCTCAATATAAATGGCGAATGCACCGGGTCGCT 81828 Query 63418 TGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAA 63477 | ||||| || || || | ||| | ||| | | |||| | || | ||||||| | | Sbjct 81829 TATTTCCACCTTGGTCGACGTAACGAGCTGCATAATTAAATACCTGGAGCATTGGAGTTA 81888 Query 63478 TACCGTTTGATATACCATTGGTACCGGAGATATAGCCTCCACTGGCACGAATATTACTAA 63537 || || |||| |||||| || || ||| |||| | || | |||| | || Sbjct 81889 ATCCATTCGATACACCATTTGTTCCATTGATTGGTGATCCAGTCGCTCTAATACAATGAA 81948 Query 63538 TTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTGTCAT 63597 || ||| || || || || |||||| || | || ||| ||| | || | Sbjct 81949 CATTTAAACCGATACCACCAGCATATTTAGAAATAAGAGCACATTCTTTAAGAGTACTAA 82008 Query 63598 AGATGCCTTCTATGCTATCATCGATCA-TGTTAAGTAGAAAACAGCTAGACATTTGGTGA 63656 | || || || || || ||||| ||| |||||| ||| ||||| ||||| | | ||| Sbjct 82009 ATATTCCATCAATACTGTCATCTTTCATTGTTAA-TAGGAAACAACTAGAGA---GTTGA 82064 Query 63657 CGAGTAGTT----CCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGA 63712 | | || || || ||||||||||| || ||||||||||| |||||||||| || || Sbjct 82065 CCA-TACTTTAACCCAGCATTAAATAATGTTGGAGAAGCGTGTATAAACCATTTCTCTGA 82123 Query 63713 AAGTAGATTGTACGTCT 63729 | || ||| || |||| Sbjct 82124 CATTAAATTATAAGTCT 82140 Score = 96.9 bits (106), Expect = 4e-15 Identities = 142/196 (72%), Gaps = 5/196 (3%) Strand=Plus/Plus Query 62147 ATAACTCGGATCTGCTATATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCT 62206 |||| ||| | || | ||||| ||||||| |||||||||||| || || | | || Sbjct 79329 ATAATCCGGTGCAGCAACATGGAAATTCATACTTTGACTTTGATCAATAAACGGAGCTCT 79388 Query 62207 GTCTGCAGCCATTTTTATGATCGTCTTTTGTGCAATTTCCCAAATAGTTTTATA-AACTC 62265 ||| ||||||| ||||||||| | ||| ||||||||||| ||||||| | ||||| Sbjct 79389 GTCGGCAGCCAATTTTATGATAACCGATTGATGAATTTCCCAAACAGTTTTAAATAACTC 79448 Query 62266 GCTTAATATCTTCTGGAAG-GTTTG--TATTCTGAATGGATCCACCATCTACCATAATCC 62322 || || || || ||||| ||| |||| || ||||| |||| || | ||||| Sbjct 79449 -TTTCATTTCATCGGGAAGACCTTGGATATTTTGTATGGAACCACGATTGGCAATAATGG 79507 Query 62323 TATTCTTGATCTCATC 62338 |||||| || ||||| Sbjct 79508 CATTCTTCATATCATC 79523 >seq2867 Length=150518 Score = 105 bits (116), Expect = 8e-18 Identities = 168/236 (71%), Gaps = 10/236 (4%) Strand=Plus/Plus Query 33772 CCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAGATAGttt- 33830 |||| | ||||| || | || | ||||| ||||| ||||||||||| || ||| Sbjct 86868 CCCATTGTGCCTTTTTCTGAACTCGTGGCATAGTTTCGATGGCATTAAA----TAATTTA 86923 Query 33831 -ttttCATTACT--ATCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCGAATGA 33887 | || || || ||| ||||||||| |||||| || || || |||||| |||||| Sbjct 86924 CTCTTTGTTTCTGTATCAATAACATAAGAATCGATTAATAGCGAATGCATTTCTGAATGA 86983 Query 33888 ATGTTTTCAATGGCCATCTGAAATCCGTAGAAA-CATCTAGCCTCGGTAATCTGCACTTC 33946 ||| ||||||||| || ||||| | ||| || | || ||| || | ||| | ||||| Sbjct 86984 ATGCTTTCAATGGTAATTTGAAAACTGTAAAATGCCTC-AGCTTCAGGAATTTTGACTTC 87042 Query 33947 TGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCATCACTGGCTGCAAAAA 34002 | | | |||| || | | ||||||||| | || ||||||||||| || |||| Sbjct 87043 TTGAAAGAATCTCTCGACAAGATTTTCATTGTCAATCCCATCACTGGCAGCGAAAA 87098 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629716970892960