Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schmidtea_20mediterranea_20[genbank_20GCA_5F000691995.1_202014-05- 30] 12,782 sequences; 700,725,851 total letters Query= NC_003389.1 Length=146454 Score E Sequences producing significant alignments: (Bits) Value seq2828 187 2e-42 seq4321 163 3e-35 >seq2828 Length=37213 Score = 187 bits (206), Expect = 2e-42 Identities = 389/585 (66%), Gaps = 46/585 (8%) Strand=Plus/Plus Query 11608 TAATAAATGTTTAAACATTAAACACGCAAAATCACAATGTAAACCTTCGTCTCTACTTAT 11667 || ||||| ||||||||| ||||| |||||||| ||||| | ||||| |||| || || Sbjct 28689 TACTAAATATTTAAACATCAAACAAGCAAAATCGCAATGAAGTCCTTCATCTCGGCTAAT 28748 Query 11668 TAGTTCATTAGAAAATGTTAATCCGGGCATCAATCCTCGtttttttATCCAAAATATAGC 11727 || ||| || || |||||||||||| ||||| || ||||| | ||||||||| | Sbjct 28749 TAATTCGTTGCTGAAACATAATCCGGGCATTAATCCACGCTTTTTAAGCCAAAATATCGA 28808 Query 11728 AGCAAATGAACCAGAAAAGAATATTCCCTCCACAGCTGCAAATGCTACTACTCTTTCTCC 11787 ||||| |||| || ||||||||||| ||||| |||||||| || ||||| ||| Sbjct 28809 TGCAAAACTACCACTGAAAAATATTCCCTCGACAGCAGCAAATGCAACAACTCTAGTTCC 28868 Query 11788 ATA--TACCTTGTTGCTAGAT-ATCCATTTTCTGGCCCAATCAGCTTTCTTTTTTACGCA 11844 | | | || || | | | ||||| ||||| | |||||| || | ||||| Sbjct 28869 AAAAGTGGATTTTTTATCGCTAATCCAACGCAATGCCCATTGAGCTTTTTTCTGAACGCA 28928 Query 11845 TTCCATTGTTTCTATAGCGTTAAATAA---ATGCATTTTTTCTATAT------------- 11888 | ||| ||||| || || |||||||| || | ||||||| | || Sbjct 28929 TGGCATAGTTTCGATGGCATTAAATAATTTATTCCTTTTTTCGAGATAATTTTTTATGAC 28988 Query 11889 -------------------------TATCTCTTACATATGTATCTATTAATAAACTATAC 11923 |||| | ||||| | ||| ||||||| | |||| Sbjct 28989 AAAGAAAACTATTACTTTGTTTCTGTATCAGTAACATAAGAATCGATTAATAGAGAATAC 29048 Query 11924 ATTTCTGAATGAATATTTTCCATAGCTATTTGAAATCCATAGAA-ACATCGTGCCTCTGA 11982 |||||||||||||| ||||| || || |||||||| | || || | || || || | Sbjct 29049 ATTTCTGAATGAATGTTTTCAATTGCAATTTGAAAACTGTAAAATGCCTC-AGCTTCGGG 29107 Query 11983 ACACTGTACATCCACATAAAATCTTTCCGCTAAATTCTCATTTACAATACCATCACTAGA 12042 | | || || | |||||||| | | ||| ||||| ||||| |||||||| | Sbjct 29108 AATTTTCACTTCTTGAATGAATCTTTCGACGAGATTTTCATTGACAATTCCATCACTGGC 29167 Query 12043 TGCAAAAAATGCTAGTATATGTTTTATAAAGTATTTTTCGTCTTTAGTTAATTTATCCCA 12102 ||||||||||| || | || | || || || ||| || | | | | ||| | ||| Sbjct 29168 AGCAAAAAATGCAAGAACGTGAGTAATGAAATACCGTTCATCGTCATTCATTTTTTTCCA 29227 Query 12103 ATCATCTAAATCTTTTGATAAATCTACTTCTTCAACGGTCCAAAA 12147 | | | |||||||||||||||| ||||| | || |||||||| Sbjct 29228 GTGAGCAAAATCTTTTGATAAATTAACTTCATTTACAGTCCAAAA 29272 Score = 114 bits (126), Expect = 1e-20 Identities = 183/260 (70%), Gaps = 2/260 (1%) Strand=Plus/Plus Query 11889 TATCTCTTACATATGTATCTATTAATAAACTATACATTTCTGAATGAATATTTTCCATAG 11948 |||| | ||||| | ||| ||||||| | |||||||||||||||||| ||||| || | Sbjct 31094 TATCAGTAACATAAGAATCGATTAATAGAGAATACATTTCTGAATGAATGTTTTCAATTG 31153 Query 11949 CTATTTGAAATCCATAGAAA-CATCGTGCCTCTGAACACTGTACATCCACATAAAATCTT 12007 | |||||||| | || || | || || || | | | || || | |||||| Sbjct 31154 CAATTTGAAAACTGTAAAATGCCTCA-GCTTCGGGAATTTTCACTTCTTGAATGAATCTT 31212 Query 12008 TCCGCTAAATTCTCATTTACAATACCATCACTAGATGCAAAAAATGCTAGTATATGTTTT 12067 || | | ||| ||||| ||||| |||||||| | ||||||||||| || | || | Sbjct 31213 TCGACGAGATTTTCATTGACAATTCCATCACTGGCAGCAAAAAATGCAAGAACGTGAGTA 31272 Query 12068 ATAAAGTATTTTTCGTCTTTAGTTAATTTATCCCAATCATCTAAATCTTTTGATAAATCT 12127 || || || ||| || | | | | ||| | ||| | | | |||||||||||||||| Sbjct 31273 ATGAAATACCGTTCATCGTCATTCATTTTTTTCCAGTGAGCAAAATCTTTTGATAAATTA 31332 Query 12128 ACTTCTTCAACGGTCCAAAA 12147 ||||| | || |||||||| Sbjct 31333 ACTTCATTTACAGTCCAAAA 31352 >seq4321 Length=90450 Score = 163 bits (180), Expect = 3e-35 Identities = 523/793 (66%), Gaps = 44/793 (6%) Strand=Plus/Plus Query 37707 ATTACATACAGCAACTTCATCTTCGTTACTAAATTGTATAATCTCTGTACAGAGATTACT 37766 ||| || ||||| | |||||| |||| ||| || ||| ||||| || | ||| || Sbjct 81368 ATTGCAAACAGCTATTTCATCAGGAGAACTATATTCTACAATTTCTGTGCACAAATTGCT 81427 Query 37767 CGATCTAATTGTTCCCAAATTGCTT-TGATTGGATTTTTTATTACAAGAATCTTTATATA 37825 || | || ||||| |||| ||| ||||| || || ||| || | || || |||| Sbjct 81428 GCATTTGATCGTTCCTAAAT-GCTGATGATTTGACTTGGCATTGCAGGCGTCCTTGTATA 81486 Query 37826 GTATATACGGCGTTCCTTGTTCTATTTGAGCCTCGATAATAGATTTCCATAAACTTCTTG 37885 | ||||| || ||||| ||| ||||| | |||| || |||||| ||| |||| | Sbjct 81487 GCATATAAGGAGTTCCGGTTTCGATTTGTGAATCGAGGATTTCTTTCCACAAAATTCTAG 81546 Query 37886 CTTTAACGATCGCTTTAAtttttttC---TTTGTTTCGTATTCTATATATAATTTGTTAA 37942 |||||| ||| |||| || || ||| ||| ||| | ||| | ||||| || Sbjct 81547 CTTTAA---TCGTTTTATTTCCCATCCCCTTTTCTTCATATAATTCATAGAGTTTGTCAA 81603 Query 37943 AATCATTCCCCCATACATCGCATAA--TCCTGGACATTCGCATGGACACATTAGAGACCA 38000 | | | ||||| ||| ||| | ||| | ||||| || ||| | | ||| Sbjct 81604 ACTTTTCTCCCCAG-CATT-CATGAAGTCCAGCACATTTATGAGGGTCCATCAATGTCCA 81661 Query 38001 TTCTTCATCTTTTTCTACGCGTTCCATAAATAAATCAGGTACCCATAATGCAGTAAATAA 38060 | |||| ||| || |||| ||| |||||||| || | ||| || || |||||| Sbjct 81662 ATTCCCATCACTTTGAACTCGTTTCATGAATAAATCTGGAATCCACAAAGCGCAAAATAA 81721 Query 38061 ATCTTTGGTTCTATATTCTTCGTTCC--CTACATTCTTTCTTAAGC--TTAGAAAA--TC 38114 |||| | | | || |||| | | || | | ||| ||| || || |||| || Sbjct 81722 ATCTCTAGCT-----TTTTTCGATTCATCTCCGTGGTTT-TTACGCAATTCCAAAAATTC 81775 Query 38115 GAATATATCAGCGTGCCATGGTTCTATATAAATCGACATTGCTCCTGGTCTTTTATCACC 38174 ||||| |||| |||||||| || |||||||| | | ||| || |||| |||| || Sbjct 81776 CAATATGTCAGAATGCCATGGCTCAATATAAATGGCGAATGCACCGGGTCGCTTATTTCC 81835 Query 38175 TCCCTGATTAATATATCTAACTGTGTTATTATATATTCTTAACATAGGTACTATACCATT 38234 || || | | || | | ||| | |||| ||| | ||| || || ||||| Sbjct 81836 ACCTTGGTCGACGTAACGAGCTGCATAATTAAATACCTGGAGCATTGGAGTTAATCCATT 81895 Query 38235 AGATTTGCCGTTTATACCGGATATATAAGTA--CCCTTAGCTCGTATATTACTTATCGAC 38292 ||| || ||| | || || || || || | |||| || ||| || || Sbjct 81896 CGATACACCATTTGTTCC--ATTGATTGGTGATCCAGTCGCTC---TAATACA-ATGAAC 81949 Query 38293 AAT----CCTATTCCACCTGCATGTTTTGATATTAAAGCGCATTGTTTTAACGTATCAAA 38348 | | || || ||||| |||| ||| || || | ||| |||| ||| | ||| ||| Sbjct 81950 ATTTAAACCGATACCACCAGCATATTTAGAAATAAGAGCACATTCTTTAAGAGTACTAAA 82009 Query 38349 TATACCTTCTATACTGTCATCCTTTATTGGTAGTATAAAACAACTAGACATTTGAGGCAA 38408 ||| || || ||||||||||| || |||| || || ||||||||||| | |||| | | Sbjct 82010 TATTCCATCAATACTGTCATCTTTCATTGTTAATAGGAAACAACTAGAGAGTTGA--CCA 82067 Query 38409 TGGAGTT----CCGGCGTTAAATAATGTAGGAGATGCATGTATGAACCATTTTTCCGACA 38464 | | || || || ||||||||||| ||||| || ||||| |||||||| || |||| Sbjct 82068 T--ACTTTAACCCAGCATTAAATAATGTTGGAGAAGCGTGTATAAACCATTTCTCTGACA 82125 Query 38465 AATAATTATATGT 38477 ||||||| || Sbjct 82126 TTAAATTATAAGT 82138 Score = 96.9 bits (106), Expect = 3e-15 Identities = 232/348 (67%), Gaps = 5/348 (1%) Strand=Plus/Plus Query 36930 TTGACTTTGATCTATAAACGCACCTCTGTCGGCTGCCATTTCTAAAATACATTTTTGAGA 36989 |||||||||||| ||||||| | |||||||||| |||| || || ||| |||| Sbjct 79362 TTGACTTTGATCAATAAACGGAGCTCTGTCGGCAGCCAATTTTATGATAACCGATTGATG 79421 Query 36990 TATCTCCCAAACCGTTTTATATATTTGTTTTATATTATCTGGTAAATCT---AAATGTTG 37046 || |||||||| |||||| ||| | ||| || | ||| || | | || | || ||| Sbjct 79422 AATTTCCCAAACAGTTTTAAATAACTCTTTCATTTCATCGGGAAGACCTTGGATATTTTG 79481 Query 37047 AATAGAACCATTATGTAACACAATTGTATTCTTTATGTCATTATTCCACATATTTCTACT 37106 || |||||| || | ||| | |||||| || |||| ||||| ||| | Sbjct 79482 TATGGAACCACGATTGGCAATAATGGCATTCTTCATATCATCTGACCACAGATTCAACCG 79541 Query 37107 TATTAGTTCTCTCAA-TAGGTGTGGATTTACAACCTGAAAATCTCCAGATAATACTCTTC 37165 || || ||| |||| || | | ||||||||| ||| || || ||| |||| || Sbjct 79542 AATCAGATCT-TCAATTAAATATCTATTTACAACAACAAATTCCCCGCTTAAAACTCGTC 79600 Query 37166 TTGTATATATATTGCTAGTATATGGTTCAATGGACTCATTATTACTTAATATTTGAGATG 37225 || ||| |||||||| | | | |||| | ||||| || | | || ||||| | Sbjct 79601 TTAAATAGATATTGCTTGAGAACGCCTCAAAACATTCATTGTTTCCGAGAATCTGAGAAG 79660 Query 37226 TAGATGCAGTAGGCATTGGTGCTATTAGAAGGCTATTTCTCAATCCAT 37273 || || || ||||| || || | || | |||||| | | ||||| Sbjct 79661 TACTCGCTGTTGGCATAGGAGCAACTAATAAGCTATTACGAACTCCAT 79708 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 468449941450080