Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schmidtea_20mediterranea_20[genbank_20GCA_5F000691995.1_202014-05- 30] 12,782 sequences; 700,725,851 total letters Query= NC_003391.1 Length=205719 Score E Sequences producing significant alignments: (Bits) Value seq2828 212 8e-50 seq4321 183 4e-41 >seq2828 Length=37213 Score = 212 bits (234), Expect = 8e-50 Identities = 424/631 (67%), Gaps = 48/631 (8%) Strand=Plus/Plus Query 36139 TAAATGTTTAAACATCAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAA 36198 ||||| ||||||||||||||| || |||||||| || || || || |||| |||||||| Sbjct 28692 TAAATATTTAAACATCAAACAAGCAAAATCGCAATGAAGTCCTTCATCTCGGCTAATTAA 28751 Query 36199 TTCGTTGGA-AAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACG 36257 ||||||| |||| | | ||||||||||| ||||||||||||||||||||||| || | Sbjct 28752 TTCGTTGCTGAAACATAA-TCCGGGCATTAATCCACGCTTTTTAAGCCAAAATATCGATG 28810 Query 36258 CAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCAT 36317 |||| ||| || || ||||| || || || ||||| |||| || ||| |||| Sbjct 28811 CAAAACTACCACTGAAAAATATTCCCTCGACAGCAGCAAATGCAACAACTCTAGTTCCAA 28870 Query 36318 AACCGGCACTGTCATGT---ATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAG 36374 || || | | || ||||| ||||| | || || || | || || | Sbjct 28871 AAGTGGATTTTTTATCGCTAATCCAACGCAATGCCCATTGAGCTTTTTTCTGAACGCATG 28930 Query 36375 GCATTGTCTCTATAGCATTAAA------------------GAGATAGtttttttC----- 36411 |||| || || || |||||||| |||||| |||||| Sbjct 28931 GCATAGTTTCGATGGCATTAAATAATTTATTCCTTTTTTCGAGATAATTTTTTATGACAA 28990 Query 36412 --------ATTACTATCTTT----------AACATATGTATCAATCAAAAGACTATACAT 36453 |||||| | ||| |||||| | ||| || || ||| |||||| Sbjct 28991 AGAAAACTATTACTTTGTTTCTGTATCAGTAACATAAGAATCGATTAATAGAGAATACAT 29050 Query 36454 TTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAA-ACATCTAGCCTCGGTAA 36512 ||| ||||||||||||||||| || |||||||| | ||| || | || ||| |||| || Sbjct 29051 TTCTGAATGAATGTTTTCAATTGCAATTTGAAAACTGTAAAATGCCTC-AGCTTCGGGAA 29109 Query 36513 TCTGTACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACTGGCTG 36572 | | |||||| | |||| ||| | | ||||||||| || ||||| |||||||| | Sbjct 29110 TTTTCACTTCTTGAATGAATCTTTCGACGAGATTTTCATTGACAATTCCATCACTGGCAG 29169 Query 36573 CAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTTTGGTGTTAGTTTATTCCAAT 36632 ||||||| || | || || | || ||||| ||| | | | ||| ||||| | Sbjct 29170 CAAAAAATGCAAGAACGTGAGTAATGAAATACCGTTCATCGTCATTCATTTTTTTCCAGT 29229 Query 36633 CATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTT 36692 | | |||||| |||| || ||||| | || ||||||||||| | || || | Sbjct 29230 GAGCAAAATCTTTTGATAAATTAACTTCATTTACAGTCCAAAATGAAGATCGAGCTTTAT 29289 Query 36693 TATACATATTCCAGATGTCATGATATTGAAT 36723 || |||| | ||| || || | |||||| || Sbjct 29290 TAAACATTTCCCATATATCTTCATATTGTAT 29320 Score = 143 bits (158), Expect = 4e-29 Identities = 218/308 (71%), Gaps = 2/308 (1%) Strand=Plus/Plus Query 36417 TATCTTTAACATATGTATCAATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGG 36476 |||| ||||||| | ||| || || ||| ||||||||| ||||||||||||||||| | Sbjct 31094 TATCAGTAACATAAGAATCGATTAATAGAGAATACATTTCTGAATGAATGTTTTCAATTG 31153 Query 36477 CCATTTGAAATCCGTAGAA-ACATCTAGCCTCGGTAATCTGTACTTCTGTACAAAATCGT 36535 | |||||||| | ||| || | || ||| |||| ||| | |||||| | |||| | Sbjct 31154 CAATTTGAAAACTGTAAAATGCCTC-AGCTTCGGGAATTTTCACTTCTTGAATGAATCTT 31212 Query 36536 TCTGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTT 36595 || | | ||||||||| || ||||| |||||||| |||||||| || | || || | Sbjct 31213 TCGACGAGATTTTCATTGACAATTCCATCACTGGCAGCAAAAAATGCAAGAACGTGAGTA 31272 Query 36596 ATAAAATATTTTTCGTTTGGTGTTAGTTTATTCCAATCATTGATATCTTTAGATATATCC 36655 || ||||| ||| | | | ||| ||||| | | | |||||| |||| || Sbjct 31273 ATGAAATACCGTTCATCGTCATTCATTTTTTTCCAGTGAGCAAAATCTTTTGATAAATTA 31332 Query 36656 ACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTCCAGATGTCATGA 36715 ||||| | || ||||||||||| | || || ||| |||| | ||| || || | | Sbjct 31333 ACTTCATTTACAGTCCAAAATGAAGATCGAGCTTTATTAAACATTTCCCATATATCTTCA 31392 Query 36716 TATTGAAT 36723 ||||| || Sbjct 31393 TATTGTAT 31400 >seq4321 Length=90450 Score = 183 bits (202), Expect = 4e-41 Identities = 526/796 (66%), Gaps = 30/796 (4%) Strand=Plus/Plus Query 65742 GATGCCAGATTACAAACGGCTACCTCATTAGCATCCGCATATTGTATTATCTCAGTGCAA 65801 || |||| ||| ||||| |||| |||| || | ||||| || || || ||||| Sbjct 81360 GAAGCCAAATTGCAAACAGCTATTTCATCAGGAGAACTATATTCTACAATTTCTGTGCAC 81419 Query 65802 AGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCC 65861 | ||| || || ||||| |||||||||| || ||||| ||| || || || ||| Sbjct 81420 AAATTGCTGCATTTGATCGTTCCTAAATGCTGATGATTTGACTTGGCATTGCAGGCGTCC 81479 Query 65862 TTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGACG 65921 || || || || | ||||| || ||||| || || || || | || ||||||| | Sbjct 81480 TTGTATAGCATATAAGGAGTTCCGGTTTCGATTTGTGAATCGAGGATTTCTTTCCACAAA 81539 Query 65922 ACTCGAGCCTTTATTATAGATTTGTATCTCTT----TTCTCTTTCGTATAGTGTATACAA 65977 | || ||| |||| || | ||| | || | | || |||| | |||| | ||| | Sbjct 81540 ATTCTAGC-TTTA--ATCGTTTTATTTCCCATCCCCTTTTCTT-CATATAATTCATAGAG 81595 Query 65978 TCGTTCGAACTCGTCTCCCCAAACATTGTCCAA-TCCAGGACATTCATCCGGACACATCA 66036 | || |||| |||||||| |||| || ||||| ||||| || || ||||| Sbjct 81596 TTTGTCAAACTTTTCTCCCCAG-CATTCATGAAGTCCAGCACATTTATGAGGGTCCATCA 81654 Query 66037 ACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTA 66096 | | ||| | || ||| | ||||||||||| || | ||| |||||||| | ||| Sbjct 81655 ATGTCCAATTCCCATCACTTTGAACTCGTTTCATGAATAAATCTGGAATCCACAAAGCGC 81714 Query 66097 TAAATAAATCTCTGGTTCTATGTTCCTCGTTTC--CTGTATTCTTTTTA---AGATCGAG 66151 |||||||||||| | | || ||| ||| || | |||||| | || | Sbjct 81715 AAAATAAATCTCTAGCT-----TTTTTCGATTCATCTCCGTGGTTTTTACGCAATTCCAA 81769 Query 66152 GAACGCCATAATATCATAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTT 66211 || ||| || ||| ||||||| || || | || ||||| | | || || || || Sbjct 81770 AAATTCCAATATGTCAGAATGCCATGGCTCAATATAAATGGCGAATGCACCGGGTCGCTT 81829 Query 66212 GTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAAT 66271 ||||| || || || | ||| | ||| | | |||| | || | ||||||| | | Sbjct 81830 ATTTCCACCTTGGTCGACGTAACGAGCTGCATAATTAAATACCTGGAGCATTGGAGTTAA 81889 Query 66272 ACCATTGGATGTACCATTGGTCCCGGAGATATAGCTTCCACTTGCACGAATATTACTAAT 66331 ||||| ||| |||||| || || ||| |||| | || | |||| | || Sbjct 81890 TCCATTCGATACACCATTTGTTCCATTGATTGGTGATCCAGTCGCTCTAATACAATGAAC 81949 Query 66332 TGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATA 66391 || ||| || || || || |||||| || | || ||| ||| | ||| | | Sbjct 81950 ATTTAAACCGATACCACCAGCATATTTAGAAATAAGAGCACATTCTTTAAGAGTACTAAA 82009 Query 66392 GATGCCCTCTATACTATCATCCATCA-TGTTAAGTAGAAAACAGCTAGACATTTGGTGAC 66450 || || || ||||| ||||| ||| |||||| ||| ||||| ||||| | | |||| Sbjct 82010 TATTCCATCAATACTGTCATCTTTCATTGTTAA-TAGGAAACAACTAGAGA---GTTGAC 82065 Query 66451 GACTAGTT----CCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAA 66506 | || || || ||||||||||| || ||||||||||| |||||||||| || || Sbjct 82066 CA-TACTTTAACCCAGCATTAAATAATGTTGGAGAAGCGTGTATAAACCATTTCTCTGAC 82124 Query 66507 AGTAGATTGTACGTCT 66522 | || ||| || |||| Sbjct 82125 ATTAAATTATAAGTCT 82140 Score = 105 bits (116), Expect = 9e-18 Identities = 144/196 (73%), Gaps = 5/196 (3%) Strand=Plus/Plus Query 64940 ATAACTCGGATCTGCTATATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCT 64999 |||| ||| | || | ||||| ||||||| |||||||||||| || || | | || Sbjct 79329 ATAATCCGGTGCAGCAACATGGAAATTCATACTTTGACTTTGATCAATAAACGGAGCTCT 79388 Query 65000 GTCTGCAGCCATTTTTATGATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATA-AACTC 65058 ||| ||||||| ||||||||| | ||| |||||||||||| ||||||| | ||||| Sbjct 79389 GTCGGCAGCCAATTTTATGATAACCGATTGATGAATTTCCCAAACAGTTTTAAATAACTC 79448 Query 65059 GCTTAATATCTTCTGGAAG-GTTTG--TATTCTGAATGGATCCACCATCTGCCATAATCC 65115 || || || || ||||| ||| |||| || ||||| |||| || || ||||| Sbjct 79449 -TTTCATTTCATCGGGAAGACCTTGGATATTTTGTATGGAACCACGATTGGCAATAATGG 79507 Query 65116 TATTCTTGATCTCATC 65131 |||||| || ||||| Sbjct 79508 CATTCTTCATATCATC 79523 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 658067640440880