Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schmidtea_20mediterranea_20[genbank_20GCA_5F000691995.1_202014-05- 30] 12,782 sequences; 700,725,851 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq2828 235 8e-57 seq4321 185 1e-41 seq2867 102 1e-16 >seq2828 Length=37213 Score = 235 bits (260), Expect = 8e-57 Identities = 429/631 (68%), Gaps = 48/631 (8%) Strand=Plus/Plus Query 49941 TAAATGTTTAAACATCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAG 50000 ||||| ||||||||||||||| || |||||||| || || || || |||| ||||||| Sbjct 28692 TAAATATTTAAACATCAAACAAGCAAAATCGCAATGAAGTCCTTCATCTCGGCTAATTAA 28751 Query 50001 TTCGTTGGA-AAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACG 50059 ||||||| |||| | | ||||||||||| ||||||||||||||||||||||| || | Sbjct 28752 TTCGTTGCTGAAACATAA-TCCGGGCATTAATCCACGCTTTTTAAGCCAAAATATCGATG 28810 Query 50060 CAAATGACCCAGAAAAGAAGATTCCTTCTACTGCGGCAAAGGCAACAAGTCTCTCTCCAT 50119 |||| ||| || || ||||| || || || ||||| ||||||| ||| |||| Sbjct 28811 CAAAACTACCACTGAAAAATATTCCCTCGACAGCAGCAAATGCAACAACTCTAGTTCCAA 28870 Query 50120 AACTGGCGCTGTCATGT---ATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAG 50176 || ||| | | || ||||| ||||| | || || || | || || | Sbjct 28871 AAGTGGATTTTTTATCGCTAATCCAACGCAATGCCCATTGAGCTTTTTTCTGAACGCATG 28930 Query 50177 GCATCGTTTCTATGGCATTAAA------------------GAGATAGtttttttC----- 50213 |||| ||||| ||||||||||| |||||| |||||| Sbjct 28931 GCATAGTTTCGATGGCATTAAATAATTTATTCCTTTTTTCGAGATAATTTTTTATGACAA 28990 Query 50214 --------ATTACTATCTTT----------AACATAAGTATCGATCAAAAGACTATACAT 50255 |||||| | ||| |||||||| |||||| || ||| |||||| Sbjct 28991 AGAAAACTATTACTTTGTTTCTGTATCAGTAACATAAGAATCGATTAATAGAGAATACAT 29050 Query 50256 TTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAA-ACATCTAGCCTCGGTAA 50314 ||| ||||||||||||||||| || || ||||| | ||| || | || ||| |||| || Sbjct 29051 TTCTGAATGAATGTTTTCAATTGCAATTTGAAAACTGTAAAATGCCTC-AGCTTCGGGAA 29109 Query 50315 TCTGCACTTCTGTACAAAATCGTTCAGCTAAATTTTCATTCACTATTCCGTCACTGGCTG 50374 | | ||||||| | |||| ||| | | ||||||||| || ||||| |||||||| | Sbjct 29110 TTTTCACTTCTTGAATGAATCTTTCGACGAGATTTTCATTGACAATTCCATCACTGGCAG 29169 Query 50375 CAAAAAACGCCAATACATGTTTTATAAAATGTTTTTCGTTGGGTGTTAGTTTATTCCAAT 50434 ||||||| || | || || | || |||| ||| | | | | ||| ||||| | Sbjct 29170 CAAAAAATGCAAGAACGTGAGTAATGAAATACCGTTCATCGTCATTCATTTTTTTCCAGT 29229 Query 50435 CATTGATATCTTTAGATATATCTACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTT 50494 | | |||||| |||| || ||||| | || ||||||||||| | || || | Sbjct 29230 GAGCAAAATCTTTTGATAAATTAACTTCATTTACAGTCCAAAATGAAGATCGAGCTTTAT 29289 Query 50495 TATACATATTCCAGATGTCATGATATTGGAT 50525 || |||| | ||| || || | |||||| || Sbjct 29290 TAAACATTTCCCATATATCTTCATATTGTAT 29320 Score = 152 bits (168), Expect = 7e-32 Identities = 220/308 (71%), Gaps = 2/308 (1%) Strand=Plus/Plus Query 50219 TATCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGG 50278 |||| ||||||||| |||||| || ||| ||||||||| ||||||||||||||||| | Sbjct 31094 TATCAGTAACATAAGAATCGATTAATAGAGAATACATTTCTGAATGAATGTTTTCAATTG 31153 Query 50279 CCATCTGAAATCCGTAGAA-ACATCTAGCCTCGGTAATCTGCACTTCTGTACAAAATCGT 50337 | || ||||| | ||| || | || ||| |||| ||| | ||||||| | |||| | Sbjct 31154 CAATTTGAAAACTGTAAAATGCCTC-AGCTTCGGGAATTTTCACTTCTTGAATGAATCTT 31212 Query 50338 TCAGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTT 50397 || | | ||||||||| || ||||| |||||||| |||||||| || | || || | Sbjct 31213 TCGACGAGATTTTCATTGACAATTCCATCACTGGCAGCAAAAAATGCAAGAACGTGAGTA 31272 Query 50398 ATAAAATGTTTTTCGTTGGGTGTTAGTTTATTCCAATCATTGATATCTTTAGATATATCT 50457 || |||| ||| | | | | ||| ||||| | | | |||||| |||| || Sbjct 31273 ATGAAATACCGTTCATCGTCATTCATTTTTTTCCAGTGAGCAAAATCTTTTGATAAATTA 31332 Query 50458 ACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTCCAGATGTCATGA 50517 ||||| | || ||||||||||| | || || ||| |||| | ||| || || | | Sbjct 31333 ACTTCATTTACAGTCCAAAATGAAGATCGAGCTTTATTAAACATTTCCCATATATCTTCA 31392 Query 50518 TATTGGAT 50525 ||||| || Sbjct 31393 TATTGTAT 31400 >seq4321 Length=90450 Score = 185 bits (204), Expect = 1e-41 Identities = 535/809 (66%), Gaps = 31/809 (4%) Strand=Plus/Plus Query 79621 GATGCCAGATTACAAACGGCTACCTCATTAGCATCCGCATATTGTATTATTTCAGTGCAG 79680 || |||| ||| ||||| |||| |||| || | ||||| || ||||| ||||| Sbjct 81360 GAAGCCAAATTGCAAACAGCTATTTCATCAGGAGAACTATATTCTACAATTTCTGTGCAC 81419 Query 79681 AGGTTACTACACTTAATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCC 79740 | || || || || || |||||||||| || ||||| ||| || || || ||| Sbjct 81420 AAATTGCTGCATTTGATCGTTCCTAAATGCTGATGATTTGACTTGGCATTGCAGGCGTCC 81479 Query 79741 TTATAAAGAATGAACGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGACG 79800 || || || || | ||||| || ||||| || || || || | || ||||||| | Sbjct 81480 TTGTATAGCATATAAGGAGTTCCGGTTTCGATTTGTGAATCGAGGATTTCTTTCCACAAA 81539 Query 79801 ACTCGAGCCTTTATTATAGACTTGTATCTCTT----TTCTCTTTCGTATTGTGTATATAA 79856 | || ||| |||| || | || | || | | || |||| | ||| | ||| | Sbjct 81540 ATTCTAGC-TTTA--ATCGTTTTATTTCCCATCCCCTTTTCTT-CATATAATTCATAGAG 81595 Query 79857 TCGTTCGAACTCGTCTCCCCAAACATCGTCTAATCCAGGACATTCGTCAGGACACATCAA 79916 | || |||| |||||||| || | | ||||| ||||| | ||| |||||| Sbjct 81596 TTTGTCAAACTTTTCTCCCCAGCATTCATGAAGTCCAGCACATTTATGAGGGTCCATCAA 81655 Query 79917 CGACCACTCTCCATCATCCTTT--ACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCT 79974 | ||| | |||||| |||| ||||||||||| || | ||| |||||||| | ||| Sbjct 81656 TGTCCAATTCCCATCA--CTTTGAACTCGTTTCATGAATAAATCTGGAATCCACAAAGCG 81713 Query 79975 ATAAATAGATCTCTGGTTCTATGCTCCTCGTTTCCTGTATTCTTTTTAAGA---TCGAGG 80031 ||||| |||||| | | | | | || | ||| | |||||| | || | Sbjct 81714 CAAAATAAATCTCTAGCTTTTTTCGATTCATCTCCG---TGGTTTTTACGCAATTCCAAA 81770 Query 80032 AACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCCGGTCGTTTG 80091 || ||| || ||||||||||| || || | || ||||| | | || ||||| || Sbjct 81771 AATTCCAATATGTCAGAATGCCATGGCTCAATATAAATGGCGAATGCACCGGGTCGCTTA 81830 Query 80092 TTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATA 80151 ||||| || || || | ||| | ||| | | |||| | || | ||||||| | | Sbjct 81831 TTTCCACCTTGGTCGACGTAACGAGCTGCATAATTAAATACCTGGAGCATTGGAGTTAAT 81890 Query 80152 CCATTGGATGTACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATTACTAATT 80211 ||||| ||| |||||| || || ||| |||| | || | |||| | || Sbjct 81891 CCATTCGATACACCATTTGTTCCATTGATTGGTGATCCAGTCGCTCTAATACAATGAACA 81950 Query 80212 GATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAG 80271 || ||| || || || || |||||| || | || ||| ||| | ||| | | Sbjct 81951 TTTAAACCGATACCACCAGCATATTTAGAAATAAGAGCACATTCTTTAAGAGTACTAAAT 82010 Query 80272 ATGCCCTCTATGCTATCATCAATCAT-GTTAAGTAGAAAACAGCTAGACATTTGGTGACG 80330 || || || || || ||||| |||| ||||| ||| ||||| ||||| | ||| || Sbjct 82011 ATTCCATCAATACTGTCATCTTTCATTGTTAA-TAGGAAACAACTAGAGAGTTG---ACC 82066 Query 80331 ACTAGTT----CCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACA 80386 | || || || ||||||||||| || ||||||||||| |||||||||| || |||| Sbjct 82067 A-TACTTTAACCCAGCATTAAATAATGTTGGAGAAGCGTGTATAAACCATTTCTCTGACA 82125 Query 80387 GTAGATTGTACGTCT-CAATAGCTGATTC 80414 || ||| || |||| ||| || ||||| Sbjct 82126 TTAAATTATAAGTCTACAAAAG--GATTC 82152 Score = 105 bits (116), Expect = 1e-17 Identities = 204/297 (69%), Gaps = 8/297 (3%) Strand=Plus/Plus Query 79249 ACATTCCAAAGATCATATTGTAGAATACCGTTACTAGCGTATGATCCTGTGTATGTTTCA 79308 |||||||| | |||| || |||| || |||||| | || ||| | ||||||||| Sbjct 79815 ACATTCCACATATCAGGCTGGAGAACTCCTTTACTAACCGGAGAGCCTTTATATGTTTCA 79874 Query 79309 TAAGGTCCTTCCTTTTCGGCTAATTCACAACTCGCCTCT---AATGCTCCGTAATAAATG 79365 |||| ||| ||||| ||||||||||| || || | | || || ||||||| Sbjct 79875 TAAGTTCCAAACTTTTTCGCTAATTCACA---CGACTTTTTAAGAGCACCAAAATAAATA 79931 Query 79366 GTTTCGAAAATCTTCTTATTGAGATCTTG-TGCTTCTAGGCTATCAAATGGATAATTTAA 79424 || || ||||| |||||| | || ||| || || || ||||||||||| || Sbjct 79932 GTCTCAAAAATTCGCTTATTCA-ATTTTGCAGCCTCATCACTTTCAAATGGATAGCGCAA 79990 Query 79425 GAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTCTTATT 79484 | ||| | || || | |||||||| ||||| || || || || ||||| ||| Sbjct 79991 CAATGCAAAAACATCGGCCAGACCTTGAACTCCAATCCCAATTGGCCTGTGTCTTAAATT 80050 Query 79485 AGAAATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGATT 79541 || || |||||| || | ||||||| ||| ||||| ||||| || || ||||| Sbjct 80051 GGATGTTCTAGCTTCCGGTAATGGATAATGATTTATATCAATAATCTTGTTAAGATT 80107 Score = 102 bits (112), Expect = 1e-16 Identities = 143/196 (73%), Gaps = 5/196 (3%) Strand=Plus/Plus Query 78819 ATAACTCGGATCTGCTATATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCT 78878 |||| ||| | || | ||||| ||||||| |||||||||||| || || | | || Sbjct 79329 ATAATCCGGTGCAGCAACATGGAAATTCATACTTTGACTTTGATCAATAAACGGAGCTCT 79388 Query 78879 GTCTGCAGCCATTTTTATGATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATA-AACTC 78937 ||| ||||||| ||||||||| | ||| |||||||||||| ||||||| | ||||| Sbjct 79389 GTCGGCAGCCAATTTTATGATAACCGATTGATGAATTTCCCAAACAGTTTTAAATAACTC 79448 Query 78938 GCTTAATATCTTCTGGAAG-GTTTG--TATTCTGAATGGATCCACCATCTGCCATAATCC 78994 || || || || ||||| ||| |||| || ||||| |||| || || ||||| Sbjct 79449 -TTTCATTTCATCGGGAAGACCTTGGATATTTTGTATGGAACCACGATTGGCAATAATGG 79507 Query 78995 TATTCTTGATCTCTTC 79010 |||||| || || || Sbjct 79508 CATTCTTCATATCATC 79523 >seq2867 Length=150518 Score = 102 bits (112), Expect = 1e-16 Identities = 167/236 (71%), Gaps = 10/236 (4%) Strand=Plus/Plus Query 50150 CCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAGATAGttt- 50208 |||| | ||||| || | || | ||||| ||||| |||||||||| ||| ||| Sbjct 86868 CCCATTGTGCCTTTTTCTGAACTCGTGGCATAGTTTCGATGGCATTAA----ATAATTTA 86923 Query 50209 -ttttCATTAC--TATCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCGAATGA 50265 | || || | |||| ||||||||| |||||| || || || |||||| |||||| Sbjct 86924 CTCTTTGTTTCTGTATCAATAACATAAGAATCGATTAATAGCGAATGCATTTCTGAATGA 86983 Query 50266 ATGTTTTCAATGGCCATCTGAAATCCGTAGAA-ACATCTAGCCTCGGTAATCTGCACTTC 50324 ||| ||||||||| || ||||| | ||| || | || ||| || | ||| | ||||| Sbjct 86984 ATGCTTTCAATGGTAATTTGAAAACTGTAAAATGCCTC-AGCTTCAGGAATTTTGACTTC 87042 Query 50325 TGTACAAAATCGTTCAGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAA 50380 | | | |||| || | | ||||||||| | || || |||||||| || |||| Sbjct 87043 TTGAAAGAATCTCTCGACAAGATTTTCATTGTCAATCCCATCACTGGCAGCGAAAA 87098 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 718154038602480