Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schmidtea_20mediterranea_20[genbank_20GCA_5F000691995.1_202014-05- 30] 12,782 sequences; 700,725,851 total letters Query= NC_004002.1 Length=149955 Score E Sequences producing significant alignments: (Bits) Value seq2828 203 3e-47 >seq2828 Length=37213 Score = 203 bits (224), Expect = 3e-47 Identities = 433/637 (68%), Gaps = 55/637 (9%) Strand=Plus/Plus Query 13853 TAGATGTTTAAAAATTAAACACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAG 13912 || || |||||| || ||||| |||||||| |||||||| || ||||||| ||||| | Sbjct 28692 TAAATATTTAAACATCAAACAAGCAAAATCGCAATGAAGTCCTTCATCTCGGCTAATTAA 28751 Query 13913 TTCGTT--TGAAAATGTTAATCCTGGCATCAATCCTCGtttttttAACCAAAATATTGCA 13970 |||||| ||||| |||||| ||||| ||||| || ||||| | ||||||||| | Sbjct 28752 TTCGTTGCTGAAACA--TAATCCGGGCATTAATCCACGCTTTTTAAGCCAAAATATCGAT 28809 Query 13971 GCAAATG-ACC-CGGAAAAGAATATTCCCTCAACTGCAGCAAACGCTATTAATCGTTCTC 14028 ||||| ||| | ||||| |||||||||| || |||||||| || | | || || Sbjct 28810 GCAAAACTACCACTGAAAA--ATATTCCCTCGACAGCAGCAAATGCAACAACTCTAGTTC 28867 Query 14029 CAAACGATGCTTTTTTGTTCGAT-ATCCATTTTCTAGCCCATTCAGAtttttttttAATA 14087 |||| | || ||||| ||| | ||||| ||||||| || |||||| | || Sbjct 28868 CAAAAG-TGGATTTTTTATCGCTAATCCAACGCAATGCCCATTGAGCTTTTTTCTGAACG 28926 Query 14088 AAATCCATTGTTTCAATAGCATTAAATAA-ATATTCCTTCTCTTTAG-TACTT------- 14138 | ||| ||||| || ||||||||||| |||||||| | | || || || Sbjct 28927 CATGGCATAGTTTCGATGGCATTAAATAATTTATTCCTTTTTTCGAGATAATTTTTTATG 28986 Query 14139 -----GAAA------------TGTATGTATCA-----ATAAG----------TAAGCTAT 14166 |||| | | ||||||| ||||| || || Sbjct 28987 ACAAAGAAAACTATTACTTTGTTTCTGTATCAGTAACATAAGAATCGATTAATAGAGAAT 29046 Query 14167 ACATTTCAGAGTGTATGTTTTCCATAGCTATCTGAAAACCATAAAA-GCATCTAGCTTCC 14225 ||||||| || || |||||||| || || || ||||||| ||||| || || |||||| Sbjct 29047 ACATTTCTGAATGAATGTTTTCAATTGCAATTTGAAAACTGTAAAATGCCTC-AGCTTCG 29105 Query 14226 GACCATTGTACTTC-CGAGTAAAATCTTTCGGCCAAATTTTCATTAACTATACCATCACT 14284 | || ||||| || | ||||||||| | | ||||||||| || || |||||||| Sbjct 29106 GGAATTTTCACTTCTTGAAT-GAATCTTTCGACGAGATTTTCATTGACAATTCCATCACT 29164 Query 14285 AGCTGCAAAAAATGCCAATATGTTTTTAATAAAGTATTGCTCTTCATTGTTGAGTTTTTT 14344 || ||||||||||| | | || |||| || || | || || | || | |||||| Sbjct 29165 GGCAGCAAAAAATGCAAGAACGTGAGTAATGAAATACCGTTCATCGTCATTCATTTTTTT 29224 Query 14345 CCAATCGGATAAATCCTTAGAAAGATCTACTTCATCAACTGTCCAAAAACTAGCGACAGC 14404 ||| | | ||||| || || | || ||||||| || |||||||| || ||| Sbjct 29225 CCAGTGAGCAAAATCTTTTGATAAATTAACTTCATTTACAGTCCAAAATGAAGATCGAGC 29284 Query 14405 TTTTTTATACATTACCCATATTTCTTTATATAATATA 14441 ||| ||| ||||| ||||||| |||| |||| |||| Sbjct 29285 TTTATTAAACATTTCCCATATATCTTCATATTGTATA 29321 Score = 138 bits (152), Expect = 1e-27 Identities = 201/279 (72%), Gaps = 4/279 (1%) Strand=Plus/Plus Query 14165 ATACATTTCAGAGTGTATGTTTTCCATAGCTATCTGAAAACCATAAAA-GCATCTAGCTT 14223 ||||||||| || || |||||||| || || || ||||||| ||||| || || ||||| Sbjct 31125 ATACATTTCTGAATGAATGTTTTCAATTGCAATTTGAAAACTGTAAAATGCCTC-AGCTT 31183 Query 14224 CCGACCATTGTACTTCC-GAGTAAAATCTTTCGGCCAAATTTTCATTAACTATACCATCA 14282 | | || ||||| || | || ||||||| | | ||||||||| || || |||||| Sbjct 31184 CGGGAATTTTCACTTCTTGAATGAA-TCTTTCGACGAGATTTTCATTGACAATTCCATCA 31242 Query 14283 CTAGCTGCAAAAAATGCCAATATGTTTTTAATAAAGTATTGCTCTTCATTGTTGAGTTTT 14342 || || ||||||||||| | | || |||| || || | || || | || | |||| Sbjct 31243 CTGGCAGCAAAAAATGCAAGAACGTGAGTAATGAAATACCGTTCATCGTCATTCATTTTT 31302 Query 14343 TTCCAATCGGATAAATCCTTAGAAAGATCTACTTCATCAACTGTCCAAAAACTAGCGACA 14402 ||||| | | ||||| || || | || ||||||| || |||||||| || | Sbjct 31303 TTCCAGTGAGCAAAATCTTTTGATAAATTAACTTCATTTACAGTCCAAAATGAAGATCGA 31362 Query 14403 GCTTTTTTATACATTACCCATATTTCTTTATATAATATA 14441 ||||| ||| ||||| ||||||| |||| |||| |||| Sbjct 31363 GCTTTATTAAACATTTCCCATATATCTTCATATTGTATA 31401 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 479651351458800