Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schmidtea_20mediterranea_20[genbank_20GCA_5F000691995.1_202014-05- 30] 12,782 sequences; 700,725,851 total letters Query= NC_004003.1 Length=149599 Score E Sequences producing significant alignments: (Bits) Value seq2828 178 1e-39 >seq2828 Length=37213 Score = 178 bits (196), Expect = 1e-39 Identities = 422/634 (67%), Gaps = 49/634 (8%) Strand=Plus/Plus Query 13641 TAGATGTTTAAAAATTAAACACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAG 13700 || || |||||| || ||||| |||||||| |||||||| || ||||||| ||||| | Sbjct 28692 TAAATATTTAAACATCAAACAAGCAAAATCGCAATGAAGTCCTTCATCTCGGCTAATTAA 28751 Query 13701 TTCGTT--TGAAAATGTTAATCCTGGCATCAATCCTCGtttttttAACCAAAATATTGCA 13758 |||||| ||||| |||||| ||||| ||||| || ||||| | ||||||||| | Sbjct 28752 TTCGTTGCTGAAACA--TAATCCGGGCATTAATCCACGCTTTTTAAGCCAAAATATCGAT 28809 Query 13759 GCGAATGATCCGGAAAAGAATATTCCCTCAACTGCAGCAAACGCTATTAGTCGTTCTCCA 13818 || || || || ||||||||||| || |||||||| || | | || |||| Sbjct 28810 GCAAAACTACCACTGAAAAATATTCCCTCGACAGCAGCAAATGCAACAACTCTAGTTCCA 28869 Query 13819 AACGATGCTTTTTTGTTTGATATCCATTTTCTAGCCCATTCAGAtttttttttAATAAAA 13878 || | | |||||| | ||||| ||||||| || |||||| | || | Sbjct 28870 AAAGTGGATTTTTTATCGCTAATCCAACGCAATGCCCATTGAGCTTTTTTCTGAACGCAT 28929 Query 13879 TCCATTGTTTCGATTGCATTGAATAAATG-TTCCTTCTCTTTAG-TACTT---------- 13926 ||| |||||||| ||||| ||||| | |||||| | | || || || Sbjct 28930 GGCATAGTTTCGATGGCATTAAATAATTTATTCCTTTTTTCGAGATAATTTTTTATGACA 28989 Query 13927 --GAAATGTAT------------GTATCAATAAG-TAAGCT--------------ATACA 13957 |||| ||| |||||| ||| |||| ||||| Sbjct 28990 AAGAAAACTATTACTTTGTTTCTGTATCAGTAACATAAGAATCGATTAATAGAGAATACA 29049 Query 13958 TTTCAGAGTGTATGTTTTCTATAGCTATCTGAAAACCATAAAAA-CATCTAGCTTCTGAC 14016 |||| || || |||||||| || || || ||||||| ||||| | || |||||| | Sbjct 29050 TTTCTGAATGAATGTTTTCAATTGCAATTTGAAAACTGTAAAATGCCTC-AGCTTCGGGA 29108 Query 14017 CATTGTACCTCC-GAGTAAAATCTTTCTGCCAAGTTTTCATTAACAATACCATCACTAGC 14075 || || || || | || |||||| | | |||||||| ||||| |||||||| || Sbjct 29109 ATTTTCACTTCTTGAATGAA-TCTTTCGACGAGATTTTCATTGACAATTCCATCACTGGC 29167 Query 14076 TGCAAAAAATGCCAATATGTTTTTAATAAAGTATTGCTCTTCATTGTTGAGTTTTTTCCA 14135 ||||||||||| | | || |||| || || | || || | || | ||||||||| Sbjct 29168 AGCAAAAAATGCAAGAACGTGAGTAATGAAATACCGTTCATCGTCATTCATTTTTTTCCA 29227 Query 14136 ATCGGCTAAATCCTTAGAAAGATCTACTTCATCAACTGTCCAAAAACTAGCGACAGCTTT 14195 | || ||||| || || | || ||||||| || |||||||| || |||||| Sbjct 29228 GTGAGCAAAATCTTTTGATAAATTAACTTCATTTACAGTCCAAAATGAAGATCGAGCTTT 29287 Query 14196 TTTATACATTACCCATATTTCTTTATATAATATA 14229 ||| ||||| ||||||| |||| |||| |||| Sbjct 29288 ATTAAACATTTCCCATATATCTTCATATTGTATA 29321 Score = 129 bits (142), Expect = 6e-25 Identities = 199/279 (71%), Gaps = 4/279 (1%) Strand=Plus/Plus Query 13953 ATACATTTCAGAGTGTATGTTTTCTATAGCTATCTGAAAACCATAAAAA-CATCTAGCTT 14011 ||||||||| || || |||||||| || || || ||||||| ||||| | || ||||| Sbjct 31125 ATACATTTCTGAATGAATGTTTTCAATTGCAATTTGAAAACTGTAAAATGCCTC-AGCTT 31183 Query 14012 CTGACCATTGTACCTCC-GAGTAAAATCTTTCTGCCAAGTTTTCATTAACAATACCATCA 14070 | | || || || || | || |||||| | | |||||||| ||||| |||||| Sbjct 31184 CGGGAATTTTCACTTCTTGAATGAA-TCTTTCGACGAGATTTTCATTGACAATTCCATCA 31242 Query 14071 CTAGCTGCAAAAAATGCCAATATGTTTTTAATAAAGTATTGCTCTTCATTGTTGAGTTTT 14130 || || ||||||||||| | | || |||| || || | || || | || | |||| Sbjct 31243 CTGGCAGCAAAAAATGCAAGAACGTGAGTAATGAAATACCGTTCATCGTCATTCATTTTT 31302 Query 14131 TTCCAATCGGCTAAATCCTTAGAAAGATCTACTTCATCAACTGTCCAAAAACTAGCGACA 14190 ||||| | || ||||| || || | || ||||||| || |||||||| || | Sbjct 31303 TTCCAGTGAGCAAAATCTTTTGATAAATTAACTTCATTTACAGTCCAAAATGAAGATCGA 31362 Query 14191 GCTTTTTTATACATTACCCATATTTCTTTATATAATATA 14229 ||||| ||| ||||| ||||||| |||| |||| |||| Sbjct 31363 GCTTTATTAAACATTTCCCATATATCTTCATATTGTATA 31401 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 478512333474480