Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schmidtea_20mediterranea_20[genbank_20GCA_5F000691995.1_202014-05- 30] 12,782 sequences; 700,725,851 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq2828 235 7e-57 seq4321 217 2e-51 seq2867 87.8 2e-12 >seq2828 Length=37213 Score = 235 bits (260), Expect = 7e-57 Identities = 429/631 (68%), Gaps = 48/631 (8%) Strand=Plus/Plus Query 42046 TAAATGTTTAAACATCAAACATGCGAAATCGCAGTGCAGACCCTCATCTCTACTAATTAA 42105 ||||| ||||||||||||||| || |||||||| || || || ||||||| |||||||| Sbjct 28692 TAAATATTTAAACATCAAACAAGCAAAATCGCAATGAAGTCCTTCATCTCGGCTAATTAA 28751 Query 42106 TTCGTTGGA-AAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATAGACG 42164 ||||||| |||| | | ||||||||||| ||||||||||||||||||||||| || | Sbjct 28752 TTCGTTGCTGAAACATAA-TCCGGGCATTAATCCACGCTTTTTAAGCCAAAATATCGATG 28810 Query 42165 CAAATGATCCAGAAAAGAAGATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCAT 42224 |||| ||| || || ||||| || || || ||||| |||| || ||| |||| Sbjct 28811 CAAAACTACCACTGAAAAATATTCCCTCGACAGCAGCAAATGCAACAACTCTAGTTCCAA 28870 Query 42225 AACCGGCACTGTCATGT---ATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAG 42281 || || | | || ||||| ||||| | || || || | || || | Sbjct 28871 AAGTGGATTTTTTATCGCTAATCCAACGCAATGCCCATTGAGCTTTTTTCTGAACGCATG 28930 Query 42282 GCATCGTTTCTATGGCATTAAA------------------GAGATAGtttttttC----- 42318 |||| ||||| ||||||||||| |||||| |||||| Sbjct 28931 GCATAGTTTCGATGGCATTAAATAATTTATTCCTTTTTTCGAGATAATTTTTTATGACAA 28990 Query 42319 --------ATTACTATCTTT----------AACATATGTATCGATCAAAAGACTATACAT 42360 |||||| | ||| |||||| | |||||| || ||| |||||| Sbjct 28991 AGAAAACTATTACTTTGTTTCTGTATCAGTAACATAAGAATCGATTAATAGAGAATACAT 29050 Query 42361 TTCTGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAA-ACATCTGGCCTCGGTAA 42419 ||||||||||||||||||||| || || ||||| | ||| || | || || |||| || Sbjct 29051 TTCTGAATGAATGTTTTCAATTGCAATTTGAAAACTGTAAAATGCCTC-AGCTTCGGGAA 29109 Query 42420 CCTGTACTTCTGTACAAAATCGTTCAGCTAAATTTTCGTTCACTATTCCGTCACTGGCTG 42479 | |||||| | |||| ||| | | |||||| || || ||||| |||||||| | Sbjct 29110 TTTTCACTTCTTGAATGAATCTTTCGACGAGATTTTCATTGACAATTCCATCACTGGCAG 29169 Query 42480 CAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCCGGTGTTAATTTATTCCAAT 42539 ||||||| || | || || | || ||||| ||| || | | ||| ||||| | Sbjct 29170 CAAAAAATGCAAGAACGTGAGTAATGAAATACCGTTCATCGTCATTCATTTTTTTCCAGT 29229 Query 42540 CATTGATATCTTTAGATATATCTACTTCTTCTACCGTCCAAAATGATGCTTCTGCCTTTT 42599 | | |||||| |||| || ||||| | ||| ||||||||||| | | || || | Sbjct 29230 GAGCAAAATCTTTTGATAAATTAACTTCATTTACAGTCCAAAATGAAGATCGAGCTTTAT 29289 Query 42600 TATACATATTCCAGATATCATGATATTGAAT 42630 || |||| | ||| ||||| | |||||| || Sbjct 29290 TAAACATTTCCCATATATCTTCATATTGTAT 29320 Score = 152 bits (168), Expect = 7e-32 Identities = 220/308 (71%), Gaps = 2/308 (1%) Strand=Plus/Plus Query 42324 TATCTTTAACATATGTATCGATCAAAAGACTATACATTTCTGAATGAATGTTTTCAATGG 42383 |||| ||||||| | |||||| || ||| ||||||||||||||||||||||||||| | Sbjct 31094 TATCAGTAACATAAGAATCGATTAATAGAGAATACATTTCTGAATGAATGTTTTCAATTG 31153 Query 42384 CCATCTGAAATCCGTAGAA-ACATCTGGCCTCGGTAACCTGTACTTCTGTACAAAATCGT 42442 | || ||||| | ||| || | || || |||| || | |||||| | |||| | Sbjct 31154 CAATTTGAAAACTGTAAAATGCCTC-AGCTTCGGGAATTTTCACTTCTTGAATGAATCTT 31212 Query 42443 TCAGCTAAATTTTCGTTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTT 42502 || | | |||||| || || ||||| |||||||| |||||||| || | || || | Sbjct 31213 TCGACGAGATTTTCATTGACAATTCCATCACTGGCAGCAAAAAATGCAAGAACGTGAGTA 31272 Query 42503 ATAAAATATTTTTCGTCCGGTGTTAATTTATTCCAATCATTGATATCTTTAGATATATCT 42562 || ||||| ||| || | | ||| ||||| | | | |||||| |||| || Sbjct 31273 ATGAAATACCGTTCATCGTCATTCATTTTTTTCCAGTGAGCAAAATCTTTTGATAAATTA 31332 Query 42563 ACTTCTTCTACCGTCCAAAATGATGCTTCTGCCTTTTTATACATATTCCAGATATCATGA 42622 ||||| | ||| ||||||||||| | | || || ||| |||| | ||| ||||| | | Sbjct 31333 ACTTCATTTACAGTCCAAAATGAAGATCGAGCTTTATTAAACATTTCCCATATATCTTCA 31392 Query 42623 TATTGAAT 42630 ||||| || Sbjct 31393 TATTGTAT 31400 >seq4321 Length=90450 Score = 217 bits (240), Expect = 2e-51 Identities = 543/808 (67%), Gaps = 29/808 (4%) Strand=Plus/Plus Query 71704 GATGCCAGATTACAAACGGCTACCTCATTAGCATCGGCATATTGTATAATTTCAGTGCAA 71763 || |||| ||| ||||| |||| |||| || | ||||| || |||||| ||||| Sbjct 81360 GAAGCCAAATTGCAAACAGCTATTTCATCAGGAGAACTATATTCTACAATTTCTGTGCAC 81419 Query 71764 AGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCC 71823 | ||| || || ||||| |||||||||| || ||||| ||| || || || ||| Sbjct 81420 AAATTGCTGCATTTGATCGTTCCTAAATGCTGATGATTTGACTTGGCATTGCAGGCGTCC 81479 Query 71824 TTATAAAGAATAAACGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGACG 71883 || || || ||| | ||||| || ||||| || || || || | || ||||||| | Sbjct 81480 TTGTATAGCATATAAGGAGTTCCGGTTTCGATTTGTGAATCGAGGATTTCTTTCCACAAA 81539 Query 71884 ACTCGAGCCTTTATTATATTCTTGT--ATCTCTTTTCTCTTTCGTATTGTGTATATAATC 71941 | || ||| || || | || || ||| | ||| |||| | ||| | ||| | | Sbjct 81540 ATTCTAGCTTTAATCGTTTTATTTCCCATCCCCTTT-TCTT-CATATAATTCATAGAGTT 81597 Query 71942 GTTCGAACTCGTCTCCCCAAGCATTGTCTAA-TCCAGGACATTCATTCGGACACATCAAT 72000 || |||| |||||||| ||||| || ||||| ||||| || || ||||||| Sbjct 81598 TGTCAAACTTTTCTCCCCA-GCATTCATGAAGTCCAGCACATTTATGAGGGTCCATCAAT 81656 Query 72001 GACCACTCTCCATCATCATTTACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATA 72060 | ||| | |||||| | ||||||||||| || | ||| |||||||| | ||| | Sbjct 81657 GTCCAATTCCCATCACTTTGAACTCGTTTCATGAATAAATCTGGAATCCACAAAGCGCAA 81716 Query 72061 AATAGATCTCTGGTTCTATGCTCCTCGTTTCCTGTATTCTTTTTA---AGATCGAGGAAC 72117 |||| |||||| | | | | | || | ||| | |||||| | || | || Sbjct 81717 AATAAATCTCTAGCTTTTTTCGATTCATCTCC---GTGGTTTTTACGCAATTCCAAAAAT 81773 Query 72118 GCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCCGGCCGTTTGTTT 72177 ||| || ||||||||||| || || | || ||||| | | || || || || ||| Sbjct 81774 TCCAATATGTCAGAATGCCATGGCTCAATATAAATGGCGAATGCACCGGGTCGCTTATTT 81833 Query 72178 CCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCA 72237 || || || || | ||| | ||| | | |||| | || | ||||||| | | ||| Sbjct 81834 CCACCTTGGTCGACGTAACGAGCTGCATAATTAAATACCTGGAGCATTGGAGTTAATCCA 81893 Query 72238 TTGGATGCACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAAT--ATTGCTAATTG 72295 || ||| ||||||| || || ||| |||| | || | ||| | || ||| Sbjct 81894 TTCGATACACCATTTGTTCCATTGATTGGTGATCCAGTCGCTCTAATACAATGAACATT- 81952 Query 72296 ATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGA 72355 || ||| || || || || |||||| || | || ||| ||| | ||| | | | Sbjct 81953 -TAAACCGATACCACCAGCATATTTAGAAATAAGAGCACATTCTTTAAGAGTACTAAATA 82011 Query 72356 TGCCCTCTATACTATCATCCATCA-TGTTAAGTAGAAAACAGCTAGACATTTGGTGACGA 72414 | || || ||||| ||||| ||| |||||| ||| ||||| ||||| | | |||| | Sbjct 82012 TTCCATCAATACTGTCATCTTTCATTGTTAA-TAGGAAACAACTAGAGA---GTTGACCA 82067 Query 72415 CTAGTT----CCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACAG 72470 || || || ||||||||||| || ||||||||||| |||||||||| || |||| Sbjct 82068 -TACTTTAACCCAGCATTAAATAATGTTGGAGAAGCGTGTATAAACCATTTCTCTGACAT 82126 Query 72471 TAGATTGTACGTCT-CAATAGCTGATTC 72497 || ||| || |||| ||| || ||||| Sbjct 82127 TAAATTATAAGTCTACAAAAG--GATTC 82152 Score = 86.0 bits (94), Expect = 8e-12 Identities = 119/162 (73%), Gaps = 5/162 (3%) Strand=Plus/Plus Query 70936 TGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCTTTTGTGGA 70995 ||||||||||| || || | | ||||| ||||||| ||||||||| | ||| || Sbjct 79363 TGACTTTGATCAATAAACGGAGCTCTGTCGGCAGCCAATTTTATGATAACCGATTGATGA 79422 Query 70996 ATTTCCCAAATAGTTTTATA-AACTCGCTTAATATCTTCTGGAAG-GTTTG--TATTCTG 71051 |||||||||| ||||||| | ||||| || || || || ||||| ||| |||| || Sbjct 79423 ATTTCCCAAACAGTTTTAAATAACTC-TTTCATTTCATCGGGAAGACCTTGGATATTTTG 79481 Query 71052 AATGGATCCACCATCTGCAATAATCCTATTTTTGATCTCTTC 71093 ||||| |||| || |||||||| ||| || || || || Sbjct 79482 TATGGAACCACGATTGGCAATAATGGCATTCTTCATATCATC 79523 Score = 84.2 bits (92), Expect = 3e-11 Identities = 176/256 (69%), Gaps = 10/256 (4%) Strand=Plus/Plus Query 71374 GATCCTGCATATGTATCGTATGGTCCTT-CTTTTTCGGCTAGTTCACAACTCGCCTCT-- 71430 || ||| |||||| || || | ||| |||||||| ||| |||||| || || | Sbjct 79857 GAGCCTTTATATGTTTCATAAGTTCCAAACTTTTTCG-CTAATTCACA---CGACTTTTT 79912 Query 71431 -AATGCTCCATAATAAATGGTTTCGAAAATCTTCTTATTGAGATCTTGT-GCTTCCGGGC 71488 | || ||| ||||||| || || ||||| |||||| | || ||| || || | Sbjct 79913 AAGAGCACCAAAATAAATAGTCTCAAAAATTCGCTTATTCA-ATTTTGCAGCCTCATCAC 79971 Query 71489 TATCAAATGGATAATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACGCCAATACCGA 71548 | ||||||||||| || | ||| | || || | |||||||| ||||| || | Sbjct 79972 TTTCAAATGGATAGCGCAACAATGCAAAAACATCGGCCAGACCTTGAACTCCAATCCCAA 80031 Query 71549 TAGGTCTGTGTCTCTTATTAGAAATTTCAGCTTCTGGAATAGGATAATAATTAATATCTA 71608 | || |||||||| ||| || || |||||| || | ||||||| ||| ||||| | Sbjct 80032 TTGGCCTGTGTCTTAAATTGGATGTTCTAGCTTCCGGTAATGGATAATGATTTATATCAA 80091 Query 71609 TAATTTTATTGAGATT 71624 |||| || || ||||| Sbjct 80092 TAATCTTGTTAAGATT 80107 >seq2867 Length=150518 Score = 87.8 bits (96), Expect = 2e-12 Identities = 164/236 (69%), Gaps = 10/236 (4%) Strand=Plus/Plus Query 42255 CCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAGATAGttt- 42313 |||| | ||||| || | || | ||||| ||||| ||||||||||| || ||| Sbjct 86868 CCCATTGTGCCTTTTTCTGAACTCGTGGCATAGTTTCGATGGCATTAAA----TAATTTA 86923 Query 42314 -ttttCATTACT--ATCTTTAACATATGTATCGATCAAAAGACTATACATTTCTGAATGA 42370 | || || || ||| ||||||| | |||||| || || || ||||||||||||| Sbjct 86924 CTCTTTGTTTCTGTATCAATAACATAAGAATCGATTAATAGCGAATGCATTTCTGAATGA 86983 Query 42371 ATGTTTTCAATGGCCATCTGAAATCCGTAGAA-ACATCTGGCCTCGGTAACCTGTACTTC 42429 ||| ||||||||| || ||||| | ||| || | || || || | || | ||||| Sbjct 86984 ATGCTTTCAATGGTAATTTGAAAACTGTAAAATGCCTC-AGCTTCAGGAATTTTGACTTC 87042 Query 42430 TGTACAAAATCGTTCAGCTAAATTTTCGTTCACTATTCCGTCACTGGCTGCAAAAA 42485 | | | |||| || | | |||||| || | || || |||||||| || |||| Sbjct 87043 TTGAAAGAATCTCTCGACAAGATTTTCATTGTCAATCCCATCACTGGCAGCGAAAA 87098 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 671031968734320