Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schmidtea_20mediterranea_20[genbank_20GCA_5F000691995.1_202014-05- 30] 12,782 sequences; 700,725,851 total letters Query= NC_005179.1 Length=134721 Score E Sequences producing significant alignments: (Bits) Value seq2828 159 3e-34 seq2867 86.0 5e-12 >seq2828 Length=37213 Score = 159 bits (176), Expect = 3e-34 Identities = 411/622 (66%), Gaps = 53/622 (9%) Strand=Plus/Plus Query 13139 TTAAACATCATACATGCAAAATCACAGTGCAATCCTTCATCTCTACTTATTAGCTCGTT- 13197 |||||||||| ||| |||||||| || || | ||||||||||| || |||| ||||| Sbjct 28699 TTAAACATCAAACAAGCAAAATCGCAATGAAGTCCTTCATCTCGGCTAATTAATTCGTTG 28758 Query 13198 -TGAAAATGTTAGACCCGGCATAAGCCCTCGTTTTTTAATCCAAAATATAGCAGCAAACG 13256 ||||| || || ||||| | || || ||||||| ||||||||| | ||||| Sbjct 28759 CTGAAACA--TAATCCGGGCATTAATCCACGCTTTTTAAGCCAAAATATCGATGCAAAAC 28816 Query 13257 AACCCGaaaaaaaTATTCCTTCAACTGCTGCAAACGCTATCAAC-CTTTCACCATACGTA 13315 ||| ||||||||||| || || || ||||| || | |||| || ||| | || Sbjct 28817 TACCACTGAAAAATATTCCCTCGACAGCAGCAAATGCAA-CAACTCTAGTTCCAAAAGTG 28875 Query 13316 CTATTTTTACTCTCTA-TCCACTTTCTGGCCCAGTTTGCTTTTTGTTTAACGCAGTTCAT 13374 |||||| || ||| |||| ||||| | ||||||| | |||||| ||| Sbjct 28876 GATTTTTTA-TCGCTAATCCAACGCAATGCCCATTGAGCTTTTTTCTGAACGCATGGCAT 28934 Query 13375 ATTTTCTATTGCGTTAAATAA------------------ATAAtttttt----------- 13405 | |||| || || |||||||| |||||||||| Sbjct 28935 AGTTTCGATGGCATTAAATAATTTATTCCTTTTTTCGAGATAATTTTTTATGACAAAGAA 28994 Query 13406 ----------tCCTTACTGTCTAA--AATATAAGTATCTATCAATAAGCTATACATTTCT 13453 | || |||| | | || ||||| ||| || |||| |||||||||| Sbjct 28995 AACTATTACTTTGTTTCTGTATCAGTAACATAAGAATCGATTAATAGAGAATACATTTCT 29054 Query 13454 GAATGAATATTTTCCATCGCTATTTGGAAACCATAAAA-ACATCTAGCCTCTGATACCTG 13512 |||||||| ||||| || || ||||| |||| ||||| | || ||| || | | | Sbjct 29055 GAATGAATGTTTTCAATTGCAATTTGAAAACTGTAAAATGCCTC-AGCTTCGGGAATTTT 29113 Query 13513 AACTTC-GGAGTAAAATCTTTCTGCTAAGTTTTCGTTAACTATCCCGTCACTAGCAGCaa 13571 ||||| || | |||||||| | | ||||| || || || || ||||| ||||||| Sbjct 29114 CACTTCTTGAAT-GAATCTTTCGACGAGATTTTCATTGACAATTCCATCACTGGCAGCAA 29172 Query 13572 aaaaaGCAAGTATGTGCTTAATAAAttttttttCGTTTTCTGACAACTTTAACCAATCTG 13631 |||| ||||| | ||| |||| || | ||| | || || ||| ||| | | Sbjct 29173 AAAATGCAAGAACGTGAGTAATGAAATACCGTTCATCGTCATTCATTTTTTTCCAGTGAG 29232 Query 13632 GAAAATCTTTTGATAAATCTACCTCCTCAACGGTCCAAAAAGAAGCAACAGCCTTCTTAT 13691 ||||||||||||||||| || || | || |||||||| |||| ||| || ||| Sbjct 29233 CAAAATCTTTTGATAAATTAACTTCATTTACAGTCCAAAATGAAGATCGAGCTTTATTAA 29292 Query 13692 ACATCATCCATATATCCTTATA 13713 |||| ||||||||| | ||| Sbjct 29293 ACATTTCCCATATATCTTCATA 29314 Score = 123 bits (136), Expect = 2e-23 Identities = 208/296 (70%), Gaps = 4/296 (1%) Strand=Plus/Plus Query 13420 AATATAAGTATCTATCAATAAGCTATACATTTCTGAATGAATATTTTCCATCGCTATTTG 13479 || ||||| ||| || |||| |||||||||||||||||| ||||| || || ||||| Sbjct 31101 AACATAAGAATCGATTAATAGAGAATACATTTCTGAATGAATGTTTTCAATTGCAATTTG 31160 Query 13480 GAAACCATAAAA-ACATCTAGCCTCTGATACCTGAACTTC-GGAGTAAAATCTTTCTGCT 13537 |||| ||||| | || ||| || | | | ||||| || | |||||||| | Sbjct 31161 AAAACTGTAAAATGCCTC-AGCTTCGGGAATTTTCACTTCTTGAAT-GAATCTTTCGACG 31218 Query 13538 AAGTTTTCGTTAACTATCCCGTCACTAGCAGCaaaaaaaGCAAGTATGTGCTTAATAAAt 13597 | ||||| || || || || ||||| ||||||||||| ||||| | ||| |||| || Sbjct 31219 AGATTTTCATTGACAATTCCATCACTGGCAGCAAAAAATGCAAGAACGTGAGTAATGAAA 31278 Query 13598 tttttttCGTTTTCTGACAACTTTAACCAATCTGGAAAATCTTTTGATAAATCTACCTCC 13657 | ||| | || || ||| ||| | | ||||||||||||||||| || || Sbjct 31279 TACCGTTCATCGTCATTCATTTTTTTCCAGTGAGCAAAATCTTTTGATAAATTAACTTCA 31338 Query 13658 TCAACGGTCCAAAAAGAAGCAACAGCCTTCTTATACATCATCCATATATCCTTATA 13713 | || |||||||| |||| ||| || ||| |||| ||||||||| | ||| Sbjct 31339 TTTACAGTCCAAAATGAAGATCGAGCTTTATTAAACATTTCCCATATATCTTCATA 31394 >seq2867 Length=150518 Score = 86.0 bits (94), Expect = 5e-12 Identities = 242/367 (66%), Gaps = 6/367 (2%) Strand=Plus/Plus Query 13344 CCCAGTTTGCTTTTTGTTTAACGCAGTTCATATTTTCTATTGCGTTAAATAAATAAtttt 13403 |||| | ||| |||| | ||| | |||| |||| || || |||||||| | | | | Sbjct 86868 CCCATTGTGCCTTTTTCTGAACTCGTGGCATAGTTTCGATGGCATTAAATAATTTACTCT 86927 Query 13404 tttCCTTACTGTCTAAA--ATATAAGTATCTATCAATAAGCTATACATTTCTGAATGAAT 13461 || || |||| | || | ||||| ||| || |||| || ||||||||||||||| Sbjct 86928 TTG--TTTCTGTATCAATAACATAAGAATCGATTAATAGCGAATGCATTTCTGAATGAAT 86985 Query 13462 ATTTTCCATCGCTATTTGGAAACCATAAAA-ACATCTAGCCTCTGATACCTGAACTTCGG 13520 |||| || | ||||| |||| ||||| | || ||| || | | | ||||| Sbjct 86986 GCTTTCAATGGTAATTTGAAAACTGTAAAATGCCTC-AGCTTCAGGAATTTTGACTTCTT 87044 Query 13521 AGTAAAATCTTTCTGCTAAGTTTTCGTTAACTATCCCGTCACTAGCAGCaaaaaaaGCAA 13580 | ||||| || | | ||||| || | ||||| ||||| ||||| |||| | || Sbjct 87045 GAAAGAATCTCTCGACAAGATTTTCATTGTCAATCCCATCACTGGCAGCGAAAAGGGTAA 87104 Query 13581 GTATGTGCTTAATAAAttttttttCGTTTTCTGACAACTTTAACCAATCTGGAAAATCTT 13640 | | ||| |||| || | | ||| || || || ||| |||| | ||||| || Sbjct 87105 GGACGTGAGTAATGAAATATCATTCATTGTCATTTAATTTTTACCAGCGAGCAAAATATT 87164 Query 13641 TTGATAAATCTACCTCCTCAACGGTCCAAAAAGAAGCAACAGCCTTCTTATACATCATCC 13700 |||| ||| |||| | | || ||||| ||| | ||| || ||| |||| || Sbjct 87165 TTGACTAATTAACCTTGTTTAGAGTTCAAAATCAAGATAGAGCATTATTAAACATTTCCC 87224 Query 13701 ATATATC 13707 || |||| Sbjct 87225 ATTTATC 87231 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 430915261292364