Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Schmidtea_20mediterranea_20[genbank_20GCA_5F000691995.1_202014-05-
30] 12,782 sequences; 700,725,851 total letters
Query= NC_005179.1
Length=134721
Score E
Sequences producing significant alignments: (Bits) Value
seq2828 159 3e-34
seq2867 86.0 5e-12
>seq2828
Length=37213
Score = 159 bits (176), Expect = 3e-34
Identities = 411/622 (66%), Gaps = 53/622 (9%)
Strand=Plus/Plus
Query 13139 TTAAACATCATACATGCAAAATCACAGTGCAATCCTTCATCTCTACTTATTAGCTCGTT- 13197
|||||||||| ||| |||||||| || || | ||||||||||| || |||| |||||
Sbjct 28699 TTAAACATCAAACAAGCAAAATCGCAATGAAGTCCTTCATCTCGGCTAATTAATTCGTTG 28758
Query 13198 -TGAAAATGTTAGACCCGGCATAAGCCCTCGTTTTTTAATCCAAAATATAGCAGCAAACG 13256
||||| || || ||||| | || || ||||||| ||||||||| | |||||
Sbjct 28759 CTGAAACA--TAATCCGGGCATTAATCCACGCTTTTTAAGCCAAAATATCGATGCAAAAC 28816
Query 13257 AACCCGaaaaaaaTATTCCTTCAACTGCTGCAAACGCTATCAAC-CTTTCACCATACGTA 13315
||| ||||||||||| || || || ||||| || | |||| || ||| | ||
Sbjct 28817 TACCACTGAAAAATATTCCCTCGACAGCAGCAAATGCAA-CAACTCTAGTTCCAAAAGTG 28875
Query 13316 CTATTTTTACTCTCTA-TCCACTTTCTGGCCCAGTTTGCTTTTTGTTTAACGCAGTTCAT 13374
|||||| || ||| |||| ||||| | ||||||| | |||||| |||
Sbjct 28876 GATTTTTTA-TCGCTAATCCAACGCAATGCCCATTGAGCTTTTTTCTGAACGCATGGCAT 28934
Query 13375 ATTTTCTATTGCGTTAAATAA------------------ATAAtttttt----------- 13405
| |||| || || |||||||| ||||||||||
Sbjct 28935 AGTTTCGATGGCATTAAATAATTTATTCCTTTTTTCGAGATAATTTTTTATGACAAAGAA 28994
Query 13406 ----------tCCTTACTGTCTAA--AATATAAGTATCTATCAATAAGCTATACATTTCT 13453
| || |||| | | || ||||| ||| || |||| ||||||||||
Sbjct 28995 AACTATTACTTTGTTTCTGTATCAGTAACATAAGAATCGATTAATAGAGAATACATTTCT 29054
Query 13454 GAATGAATATTTTCCATCGCTATTTGGAAACCATAAAA-ACATCTAGCCTCTGATACCTG 13512
|||||||| ||||| || || ||||| |||| ||||| | || ||| || | | |
Sbjct 29055 GAATGAATGTTTTCAATTGCAATTTGAAAACTGTAAAATGCCTC-AGCTTCGGGAATTTT 29113
Query 13513 AACTTC-GGAGTAAAATCTTTCTGCTAAGTTTTCGTTAACTATCCCGTCACTAGCAGCaa 13571
||||| || | |||||||| | | ||||| || || || || ||||| |||||||
Sbjct 29114 CACTTCTTGAAT-GAATCTTTCGACGAGATTTTCATTGACAATTCCATCACTGGCAGCAA 29172
Query 13572 aaaaaGCAAGTATGTGCTTAATAAAttttttttCGTTTTCTGACAACTTTAACCAATCTG 13631
|||| ||||| | ||| |||| || | ||| | || || ||| ||| | |
Sbjct 29173 AAAATGCAAGAACGTGAGTAATGAAATACCGTTCATCGTCATTCATTTTTTTCCAGTGAG 29232
Query 13632 GAAAATCTTTTGATAAATCTACCTCCTCAACGGTCCAAAAAGAAGCAACAGCCTTCTTAT 13691
||||||||||||||||| || || | || |||||||| |||| ||| || |||
Sbjct 29233 CAAAATCTTTTGATAAATTAACTTCATTTACAGTCCAAAATGAAGATCGAGCTTTATTAA 29292
Query 13692 ACATCATCCATATATCCTTATA 13713
|||| ||||||||| | |||
Sbjct 29293 ACATTTCCCATATATCTTCATA 29314
Score = 123 bits (136), Expect = 2e-23
Identities = 208/296 (70%), Gaps = 4/296 (1%)
Strand=Plus/Plus
Query 13420 AATATAAGTATCTATCAATAAGCTATACATTTCTGAATGAATATTTTCCATCGCTATTTG 13479
|| ||||| ||| || |||| |||||||||||||||||| ||||| || || |||||
Sbjct 31101 AACATAAGAATCGATTAATAGAGAATACATTTCTGAATGAATGTTTTCAATTGCAATTTG 31160
Query 13480 GAAACCATAAAA-ACATCTAGCCTCTGATACCTGAACTTC-GGAGTAAAATCTTTCTGCT 13537
|||| ||||| | || ||| || | | | ||||| || | |||||||| |
Sbjct 31161 AAAACTGTAAAATGCCTC-AGCTTCGGGAATTTTCACTTCTTGAAT-GAATCTTTCGACG 31218
Query 13538 AAGTTTTCGTTAACTATCCCGTCACTAGCAGCaaaaaaaGCAAGTATGTGCTTAATAAAt 13597
| ||||| || || || || ||||| ||||||||||| ||||| | ||| |||| ||
Sbjct 31219 AGATTTTCATTGACAATTCCATCACTGGCAGCAAAAAATGCAAGAACGTGAGTAATGAAA 31278
Query 13598 tttttttCGTTTTCTGACAACTTTAACCAATCTGGAAAATCTTTTGATAAATCTACCTCC 13657
| ||| | || || ||| ||| | | ||||||||||||||||| || ||
Sbjct 31279 TACCGTTCATCGTCATTCATTTTTTTCCAGTGAGCAAAATCTTTTGATAAATTAACTTCA 31338
Query 13658 TCAACGGTCCAAAAAGAAGCAACAGCCTTCTTATACATCATCCATATATCCTTATA 13713
| || |||||||| |||| ||| || ||| |||| ||||||||| | |||
Sbjct 31339 TTTACAGTCCAAAATGAAGATCGAGCTTTATTAAACATTTCCCATATATCTTCATA 31394
>seq2867
Length=150518
Score = 86.0 bits (94), Expect = 5e-12
Identities = 242/367 (66%), Gaps = 6/367 (2%)
Strand=Plus/Plus
Query 13344 CCCAGTTTGCTTTTTGTTTAACGCAGTTCATATTTTCTATTGCGTTAAATAAATAAtttt 13403
|||| | ||| |||| | ||| | |||| |||| || || |||||||| | | | |
Sbjct 86868 CCCATTGTGCCTTTTTCTGAACTCGTGGCATAGTTTCGATGGCATTAAATAATTTACTCT 86927
Query 13404 tttCCTTACTGTCTAAA--ATATAAGTATCTATCAATAAGCTATACATTTCTGAATGAAT 13461
|| || |||| | || | ||||| ||| || |||| || |||||||||||||||
Sbjct 86928 TTG--TTTCTGTATCAATAACATAAGAATCGATTAATAGCGAATGCATTTCTGAATGAAT 86985
Query 13462 ATTTTCCATCGCTATTTGGAAACCATAAAA-ACATCTAGCCTCTGATACCTGAACTTCGG 13520
|||| || | ||||| |||| ||||| | || ||| || | | | |||||
Sbjct 86986 GCTTTCAATGGTAATTTGAAAACTGTAAAATGCCTC-AGCTTCAGGAATTTTGACTTCTT 87044
Query 13521 AGTAAAATCTTTCTGCTAAGTTTTCGTTAACTATCCCGTCACTAGCAGCaaaaaaaGCAA 13580
| ||||| || | | ||||| || | ||||| ||||| ||||| |||| | ||
Sbjct 87045 GAAAGAATCTCTCGACAAGATTTTCATTGTCAATCCCATCACTGGCAGCGAAAAGGGTAA 87104
Query 13581 GTATGTGCTTAATAAAttttttttCGTTTTCTGACAACTTTAACCAATCTGGAAAATCTT 13640
| | ||| |||| || | | ||| || || || ||| |||| | ||||| ||
Sbjct 87105 GGACGTGAGTAATGAAATATCATTCATTGTCATTTAATTTTTACCAGCGAGCAAAATATT 87164
Query 13641 TTGATAAATCTACCTCCTCAACGGTCCAAAAAGAAGCAACAGCCTTCTTATACATCATCC 13700
|||| ||| |||| | | || ||||| ||| | ||| || ||| |||| ||
Sbjct 87165 TTGACTAATTAACCTTGTTTAGAGTTCAAAATCAAGATAGAGCATTATTAAACATTTCCC 87224
Query 13701 ATATATC 13707
|| ||||
Sbjct 87225 ATTTATC 87231
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 430915261292364
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |