Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schmidtea_20mediterranea_20[genbank_20GCA_5F000691995.1_202014-05- 30] 12,782 sequences; 700,725,851 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq1856 149 1e-31 seq1321 149 1e-31 seq10620 104 4e-18 seq6902 95.1 2e-15 >seq1856 Length=122223 Score = 149 bits (164), Expect = 1e-31 Identities = 193/267 (72%), Gaps = 0/267 (0%) Strand=Plus/Plus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 || |||||||| | | | |||||| |||||||| ||||| ||||| |||||||| ||| Sbjct 85776 GCAAAGCGTCACAGAAAAGTTCTTCGTGATAACATTCAAGGTATCACAAAGCCAGCAATC 85835 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 | | | |||||||| ||||| || || | | ||||||||| | |||||||| | Sbjct 85836 AGAAGATTAGCTCGTCGAGGTGGTGTGAAAAGAATTTCTGGATTGATATATGAAGAAACC 85895 Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612 || | |||| | || | || || | | ||||| || ||| | || || ||| Sbjct 85896 CGAGGTGTTCTTAAAGTATTTCTAGAAAATGTTATTAGAGACGCTGTGACATACACTGAG 85955 Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGC 16672 |||||||| || ||||| || || |||||||| |||||||||| |||||||| ||||| Sbjct 85956 CACGCTAAGCGCAAGACAGTAACTGCCATGGATGTCGTCTATGCTTTGAAACGACAAGGA 86015 Query 16673 CGTAAGATTTATGGTTTTGGAAGTTAA 16699 | | | || ||||||||| ||||| Sbjct 86016 AGAACTTTGTACGGTTTTGGAGGTTAA 86042 Score = 149 bits (164), Expect = 1e-31 Identities = 193/267 (72%), Gaps = 0/267 (0%) Strand=Plus/Minus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 || |||||||| | | | |||||| |||||||| ||||| ||||| |||||||| ||| Sbjct 113267 GCAAAGCGTCACAGAAAAGTTCTTCGTGATAACATTCAAGGTATCACAAAGCCAGCAATC 113208 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 | | | |||||||| ||||| || || | | ||||||||| | |||||||| | Sbjct 113207 AGAAGATTAGCTCGTCGAGGTGGTGTGAAAAGAATTTCTGGATTGATATATGAAGAAACC 113148 Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612 || | |||| | || | || || | | ||||| || ||| | || || ||| Sbjct 113147 CGAGGTGTTCTTAAAGTATTTCTAGAAAATGTTATTAGAGACGCTGTGACATACACTGAG 113088 Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGC 16672 |||||||| || ||||| || || |||||||| |||||||||| |||||||| ||||| Sbjct 113087 CACGCTAAGCGCAAGACAGTAACTGCCATGGATGTCGTCTATGCTTTGAAACGACAAGGA 113028 Query 16673 CGTAAGATTTATGGTTTTGGAAGTTAA 16699 | | | || ||||||||| ||||| Sbjct 113027 AGAACTTTGTACGGTTTTGGAGGTTAA 113001 Score = 149 bits (164), Expect = 1e-31 Identities = 193/267 (72%), Gaps = 0/267 (0%) Strand=Plus/Minus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 || |||||||| | | | |||||| |||||||| ||||| ||||| |||||||| ||| Sbjct 116064 GCAAAGCGTCACAGAAAAGTTCTTCGTGATAACATTCAAGGTATCACAAAGCCAGCAATC 116005 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 | | | |||||||| ||||| || || | | ||||||||| | |||||||| | Sbjct 116004 AGAAGATTAGCTCGTCGAGGTGGTGTGAAAAGAATTTCTGGATTGATATATGAAGAAACC 115945 Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612 || | |||| | || | || || | | ||||| || ||| | || || ||| Sbjct 115944 CGAGGTGTTCTTAAAGTATTTCTAGAAAATGTTATTAGAGACGCTGTGACATACACTGAG 115885 Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGC 16672 |||||||| || ||||| || || |||||||| |||||||||| |||||||| ||||| Sbjct 115884 CACGCTAAGCGCAAGACAGTAACTGCCATGGATGTCGTCTATGCTTTGAAACGACAAGGA 115825 Query 16673 CGTAAGATTTATGGTTTTGGAAGTTAA 16699 | | | || ||||||||| ||||| Sbjct 115824 AGAACTTTGTACGGTTTTGGAGGTTAA 115798 Score = 149 bits (164), Expect = 1e-31 Identities = 193/267 (72%), Gaps = 0/267 (0%) Strand=Plus/Minus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 || |||||||| | | | |||||| |||||||| ||||| ||||| |||||||| ||| Sbjct 117982 GCAAAGCGTCACAGAAAAGTTCTTCGTGATAACATTCAAGGTATCACAAAGCCAGCAATC 117923 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 | | | |||||||| ||||| || || | | ||||||||| | |||||||| | Sbjct 117922 AGAAGATTAGCTCGTCGAGGTGGTGTGAAAAGAATTTCTGGATTGATATATGAAGAAACC 117863 Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612 || | |||| | || | || || | | ||||| || ||| | || || ||| Sbjct 117862 CGAGGTGTTCTTAAAGTATTTCTAGAAAATGTTATTAGAGACGCTGTGACATACACTGAG 117803 Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGC 16672 |||||||| || ||||| || || |||||||| |||||||||| |||||||| ||||| Sbjct 117802 CACGCTAAGCGCAAGACAGTAACTGCCATGGATGTCGTCTATGCTTTGAAACGACAAGGA 117743 Query 16673 CGTAAGATTTATGGTTTTGGAAGTTAA 16699 | | | || ||||||||| ||||| Sbjct 117742 AGAACTTTGTACGGTTTTGGAGGTTAA 117716 >seq1321 Length=219234 Score = 149 bits (164), Expect = 1e-31 Identities = 193/267 (72%), Gaps = 0/267 (0%) Strand=Plus/Plus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 || |||||||| | | | ||||| |||||||| ||||| ||||| |||||||| ||| Sbjct 188989 GCAAAGCGTCACAGAAAAGTCCTTCGTGATAACATTCAAGGTATCACAAAGCCAGCAATC 189048 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 | | | |||||||| ||||| || ||| | | ||||||||| | |||||||| | Sbjct 189049 AGAAGATTAGCTCGTCGAGGTGGTGTTAAGAGAATTTCTGGATTGATATATGAAGAAACC 189108 Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612 || | |||| | || | ||| | | | ||||| || ||| | || || ||| Sbjct 189109 CGAGGTGTTCTTAAAGTATTCTTGGAAAATGTTATTAGAGACGCTGTGACATACACTGAG 189168 Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGC 16672 |||||||| || ||||| || || |||||||| |||||||||| |||||||| ||||| Sbjct 189169 CACGCTAAGCGCAAGACAGTAACTGCCATGGATGTCGTCTATGCTTTGAAACGACAAGGA 189228 Query 16673 CGTAAGATTTATGGTTTTGGAAGTTAA 16699 | | | || ||||||||| ||||| Sbjct 189229 AGAACTTTGTACGGTTTTGGAGGTTAA 189255 Score = 149 bits (164), Expect = 1e-31 Identities = 193/267 (72%), Gaps = 0/267 (0%) Strand=Plus/Minus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 || |||||||| | | | |||||| |||||||| ||||| ||||| |||||||| ||| Sbjct 202310 GCAAAGCGTCACAGAAAAGTTCTTCGTGATAACATTCAAGGTATCACAAAGCCAGCAATC 202251 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 | | | |||||||| ||||| || ||| | | || |||||| | |||||||| | Sbjct 202250 AGAAGATTAGCTCGTCGAGGTGGTGTTAAGAGAATTTCCGGATTGATATATGAAGAAACC 202191 Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612 || | |||| | || | || || | | ||||| || ||| | || || ||| Sbjct 202190 CGAGGTGTTCTTAAAGTATTTCTAGAAAATGTTATTAGAGACGCTGTGACATACACTGAG 202131 Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGC 16672 |||||||| || ||||| || || |||||||| |||||||||| |||||||| ||||| Sbjct 202130 CACGCTAAGCGCAAGACAGTAACTGCCATGGATGTCGTCTATGCTTTGAAACGACAAGGA 202071 Query 16673 CGTAAGATTTATGGTTTTGGAAGTTAA 16699 | | | || ||||||||| ||||| Sbjct 202070 AGAACTTTGTACGGTTTTGGAGGTTAA 202044 Score = 84.2 bits (92), Expect = 3e-12 Identities = 76/96 (79%), Gaps = 0/96 (0%) Strand=Plus/Plus Query 16604 TATACCGAGCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAA 16663 || || ||||||||||| || ||||| || || |||||||| |||||||||| |||||| Sbjct 183992 TACACTGAGCACGCTAAGCGCAAGACAGTAACTGCCATGGATGTCGTCTATGCTTTGAAA 184051 Query 16664 CGTCAAGGCCGTAAGATTTATGGTTTTGGAAGTTAA 16699 || ||||| | | | || ||||||||| ||||| Sbjct 184052 CGACAAGGAAGAACTTTGTACGGTTTTGGAGGTTAA 184087 >seq10620 Length=64848 Score = 104 bits (114), Expect = 4e-18 Identities = 170/245 (69%), Gaps = 0/245 (0%) Strand=Plus/Minus Query 16457 CGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGA 16516 || ||||| || ||||||||||| || || || || | ||| | || | | ||||| Sbjct 9845 CGTGATAATATTCAAGGAATCACTAAACCTGCAATTAGACGTTTAGCAAGAAGAGGTGGC 9786 Query 16517 GTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTC 16576 || || || | ||||| || | |||||||| | || | ||| ||||| | || || Sbjct 9785 GTTAAACGAATATCTGGGCTGATTTATGAAGAAACACGAGGTGTGCTGAAGGTTTTTCTG 9726 Query 16577 AAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACC 16636 | | | |||| |||||| || ||||| || ||||| || || || || || || Sbjct 9725 GAAAATATCATCCGCGATGCTGTCACATATACGGAACACGCGAAGCGAAAAACCGTGACT 9666 Query 16637 TCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGGAAGT 16696 | |||||| | || ||||| |||||||||||||| || | ||||||| || || | Sbjct 9665 GCAATGGATGTTGTTTATGCTTTGAAACGTCAAGGTCGAACTCTTTATGGGTTCGGTGGA 9606 Query 16697 TAATC 16701 ||||| Sbjct 9605 TAATC 9601 >seq6902 Length=18701 Score = 95.1 bits (104), Expect = 2e-15 Identities = 185/271 (68%), Gaps = 8/271 (3%) Strand=Plus/Plus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 || ||||||||||| | | | || |||||||| |||||||| || ||||| || || Sbjct 1681 GCCAAGCGTCATCGTAAGGTTTTACGTGATAACATTCAAGGAATAACTAAGCCGGCAATT 1740 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 | | | |||||| | || ||||| || | | ||||| || | || ||||| | | Sbjct 1741 AGAAGATTAGCTCGTAGAGGCGGAGTAAAAAGAATATCTGGTTTAATTTACGAAGAAACT 1800 Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612 |||| |||| | || | ||||| | | ||||| || ||| | ||||| || Sbjct 1801 CGTGGTGTTCTCAAAGTTTTCCTGGAAAATGTTATAAGAGACGCTGTTACTTATACTGAA 1860 Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGC 16672 || ||||| |||||||| || || | |||||| | || || || | ||||| ||||| Sbjct 1861 CATGCTAAGCGTAAGACAGTAACTGCAATGGATGTTGTTTACGCTCTTAAACGCCAAGG- 1919 Query 16673 CGTAAGA--TTTAT--GGTTTTGGAAGTTAA 16699 |||| ||||| || || ||| ||||| Sbjct 1920 ---AAGAACTTTATACGGATTCGGAGGTTAA 1947 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 79063513327926