Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schmidtea_20mediterranea_20[genbank_20GCA_5F000691995.1_202014-05- 30] 12,782 sequences; 700,725,851 total letters Query= NC_006966.1 Length=166259 Score E Sequences producing significant alignments: (Bits) Value seq2828 132 5e-26 >seq2828 Length=37213 Score = 132 bits (146), Expect = 5e-26 Identities = 151/199 (76%), Gaps = 8/199 (4%) Strand=Plus/Plus Query 21457 TAATTGTTTAAACATCAAACATGCAAAATCACAATGCAAACCTTCATCCCTACTTATTAA 21516 ||| | ||||||||||||||| |||||||| ||||| | |||||||| | || ||||| Sbjct 28692 TAAATATTTAAACATCAAACAAGCAAAATCGCAATGAAGTCCTTCATCTCGGCTAATTAA 28751 Query 21517 TTCATTAGAAAATGTTAAACCGGGCATTAATCCTCTCTTTTTTAACCAAAATATTGACGC 21576 ||| || || ||| |||||||||||||| | |||||| | ||||||||| || || Sbjct 28752 TTCGTTGCTGAAACATAATCCGGGCATTAATCCACGCTTTTTAAGCCAAAATATCGATGC 28811 Query 21577 AAA--TGCTCCTGAAAAGAAAATGCCCTCAACGGCAGCAAATGCAACTAATC--GTTCAC 21632 ||| | | |||||| || || ||||| || |||||||||||||| | || ||| | Sbjct 28812 AAAACTACCACTGAAA--AATATTCCCTCGACAGCAGCAAATGCAACAACTCTAGTT--C 28867 Query 21633 CGTATGTAGATTCTTTATC 21651 | | || |||| |||||| Sbjct 28868 CAAAAGTGGATTTTTTATC 28886 Score = 100 bits (110), Expect = 3e-16 Identities = 189/273 (69%), Gaps = 4/273 (1%) Strand=Plus/Plus Query 21769 ATACATTTCAGAATGTATATTTTCTATCGCTATCTGAAATCCGTAAAAA-CATCTTGCCT 21827 ||||||||| ||||| || ||||| || || || ||||| | |||||| | || || | Sbjct 29045 ATACATTTCTGAATGAATGTTTTCAATTGCAATTTGAAAACTGTAAAATGCCTCA-GCTT 29103 Query 21828 CTGAACATTGAACCTCG-GAATAAAATCGTTGAGCCAAGTTTTCATTTACTATTCCATCA 21886 | | | || || || |||| || || || | | |||||||| || ||||||||| Sbjct 29104 CGGGAATTTTCACTTCTTGAATGAA-TCTTTCGACGAGATTTTCATTGACAATTCCATCA 29162 Query 21887 CTGGCGGCAAAAAATGCCAATATATTTTTTATAAAATATCGTTCGTTATCTGTTAATTTT 21946 ||||| ||||||||||| | | | | || ||||| ||||| | || | | |||| Sbjct 29163 CTGGCAGCAAAAAATGCAAGAACGTGAGTAATGAAATACCGTTCATCGTCATTCATTTTT 29222 Query 21947 TTCCAATCTAATAAATCTTTTGATAAATCTACTTCTTCAGTTGTCCAAAAGCTAGCAATA 22006 ||||| | |||||||||||||||| ||||| | |||||||| || | Sbjct 29223 TTCCAGTGAGCAAAATCTTTTGATAAATTAACTTCATTTACAGTCCAAAATGAAGATCGA 29282 Query 22007 GCCTTTTTATACATAATCCAGATATCATTATAT 22039 || || ||| |||| ||| ||||| | |||| Sbjct 29283 GCTTTATTAAACATTTCCCATATATCTTCATAT 29315 Score = 100 bits (110), Expect = 3e-16 Identities = 189/273 (69%), Gaps = 4/273 (1%) Strand=Plus/Plus Query 21769 ATACATTTCAGAATGTATATTTTCTATCGCTATCTGAAATCCGTAAAAA-CATCTTGCCT 21827 ||||||||| ||||| || ||||| || || || ||||| | |||||| | || || | Sbjct 31125 ATACATTTCTGAATGAATGTTTTCAATTGCAATTTGAAAACTGTAAAATGCCTCA-GCTT 31183 Query 21828 CTGAACATTGAACCTCG-GAATAAAATCGTTGAGCCAAGTTTTCATTTACTATTCCATCA 21886 | | | || || || |||| || || || | | |||||||| || ||||||||| Sbjct 31184 CGGGAATTTTCACTTCTTGAATGAA-TCTTTCGACGAGATTTTCATTGACAATTCCATCA 31242 Query 21887 CTGGCGGCAAAAAATGCCAATATATTTTTTATAAAATATCGTTCGTTATCTGTTAATTTT 21946 ||||| ||||||||||| | | | | || ||||| ||||| | || | | |||| Sbjct 31243 CTGGCAGCAAAAAATGCAAGAACGTGAGTAATGAAATACCGTTCATCGTCATTCATTTTT 31302 Query 21947 TTCCAATCTAATAAATCTTTTGATAAATCTACTTCTTCAGTTGTCCAAAAGCTAGCAATA 22006 ||||| | |||||||||||||||| ||||| | |||||||| || | Sbjct 31303 TTCCAGTGAGCAAAATCTTTTGATAAATTAACTTCATTTACAGTCCAAAATGAAGATCGA 31362 Query 22007 GCCTTTTTATACATAATCCAGATATCATTATAT 22039 || || ||| |||| ||| ||||| | |||| Sbjct 31363 GCTTTATTAAACATTTCCCATATATCTTCATAT 31395 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 531815815549680