Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schmidtea_20mediterranea_20[genbank_20GCA_5F000691995.1_202014-05- 30] 12,782 sequences; 700,725,851 total letters Query= NC_006998.1 Length=194711 Score E Sequences producing significant alignments: (Bits) Value seq2828 226 4e-54 seq4321 178 2e-39 seq2867 102 1e-16 >seq2828 Length=37213 Score = 226 bits (250), Expect = 4e-54 Identities = 427/631 (68%), Gaps = 48/631 (8%) Strand=Plus/Plus Query 33285 TAAATGTTTAAACATCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAG 33344 ||||| ||||||||||||||| || |||||||| || || || || |||| ||||||| Sbjct 28692 TAAATATTTAAACATCAAACAAGCAAAATCGCAATGAAGTCCTTCATCTCGGCTAATTAA 28751 Query 33345 TTCGTTGGA-AAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAG 33403 ||||||| |||| | | ||||||||||| ||||||||||||||||||||||| || | Sbjct 28752 TTCGTTGCTGAAACATAA-TCCGGGCATTAATCCACGCTTTTTAAGCCAAAATATCGATG 28810 Query 33404 CGAATGATCCAGAAAAGAAGATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCAT 33463 | || ||| || || ||||| || || |||||||| |||| || ||| |||| Sbjct 28811 CAAAACTACCACTGAAAAATATTCCCTCGACAGCAGCAAATGCAACAACTCTAGTTCCAA 28870 Query 33464 AACCGGCGCTGTCATGT---ATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAG 33520 || || | | || ||||| ||||| | || || || | || || | Sbjct 28871 AAGTGGATTTTTTATCGCTAATCCAACGCAATGCCCATTGAGCTTTTTTCTGAACGCATG 28930 Query 33521 GCATCGTTTCTATGGCATTAAA------------------GAGATAGtttttttC----- 33557 |||| ||||| ||||||||||| |||||| |||||| Sbjct 28931 GCATAGTTTCGATGGCATTAAATAATTTATTCCTTTTTTCGAGATAATTTTTTATGACAA 28990 Query 33558 --------ATTACTATCTTT----------AACATAAGTATCGATCAAAAGACTATACAT 33599 |||||| | ||| |||||||| |||||| || ||| |||||| Sbjct 28991 AGAAAACTATTACTTTGTTTCTGTATCAGTAACATAAGAATCGATTAATAGAGAATACAT 29050 Query 33600 TTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAA-ACATCTAGCCTCGGTAA 33658 ||| ||||||||||||||||| || || ||||| | ||| || | || ||| |||| || Sbjct 29051 TTCTGAATGAATGTTTTCAATTGCAATTTGAAAACTGTAAAATGCCTC-AGCTTCGGGAA 29109 Query 33659 TCTGTACTTCTGTACAAAATCGTTCCGCCAAATTTTCATTCACTATTCCGTCACTGGCTG 33718 | | |||||| | |||| ||| | | ||||||||| || ||||| |||||||| | Sbjct 29110 TTTTCACTTCTTGAATGAATCTTTCGACGAGATTTTCATTGACAATTCCATCACTGGCAG 29169 Query 33719 CAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTTATTCCAAT 33778 ||||||| || | || || | || ||||| ||| || | | ||| ||||| | Sbjct 29170 CAAAAAATGCAAGAACGTGAGTAATGAAATACCGTTCATCGTCATTCATTTTTTTCCAGT 29229 Query 33779 CATTGATATCTTTAGATATATCTACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTT 33838 | | |||||| |||| || ||||| | || ||||||||||| | || || | Sbjct 29230 GAGCAAAATCTTTTGATAAATTAACTTCATTTACAGTCCAAAATGAAGATCGAGCTTTAT 29289 Query 33839 TATACATGTTCCAGATGTCATAATATTGGAT 33869 || |||| | ||| || || | |||||| || Sbjct 29290 TAAACATTTCCCATATATCTTCATATTGTAT 29320 Score = 152 bits (168), Expect = 6e-32 Identities = 220/308 (71%), Gaps = 2/308 (1%) Strand=Plus/Plus Query 33563 TATCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGG 33622 |||| ||||||||| |||||| || ||| ||||||||| ||||||||||||||||| | Sbjct 31094 TATCAGTAACATAAGAATCGATTAATAGAGAATACATTTCTGAATGAATGTTTTCAATTG 31153 Query 33623 CCATCTGAAATCCGTAGAA-ACATCTAGCCTCGGTAATCTGTACTTCTGTACAAAATCGT 33681 | || ||||| | ||| || | || ||| |||| ||| | |||||| | |||| | Sbjct 31154 CAATTTGAAAACTGTAAAATGCCTC-AGCTTCGGGAATTTTCACTTCTTGAATGAATCTT 31212 Query 33682 TCCGCCAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTT 33741 || | | ||||||||| || ||||| |||||||| |||||||| || | || || | Sbjct 31213 TCGACGAGATTTTCATTGACAATTCCATCACTGGCAGCAAAAAATGCAAGAACGTGAGTA 31272 Query 33742 ATAAAATATTTTTCGTCTGGTGTTAGTTTATTCCAATCATTGATATCTTTAGATATATCT 33801 || ||||| ||| || | | ||| ||||| | | | |||||| |||| || Sbjct 31273 ATGAAATACCGTTCATCGTCATTCATTTTTTTCCAGTGAGCAAAATCTTTTGATAAATTA 31332 Query 33802 ACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATGTTCCAGATGTCATAA 33861 ||||| | || ||||||||||| | || || ||| |||| | ||| || || | | Sbjct 31333 ACTTCATTTACAGTCCAAAATGAAGATCGAGCTTTATTAAACATTTCCCATATATCTTCA 31392 Query 33862 TATTGGAT 33869 ||||| || Sbjct 31393 TATTGTAT 31400 >seq4321 Length=90450 Score = 178 bits (196), Expect = 2e-39 Identities = 526/797 (66%), Gaps = 32/797 (4%) Strand=Plus/Plus Query 62898 GATGCCAGATTACAAACGGCTACCTCATTAGCATCCGCATATTGTATTATCTCAGTGCAA 62957 || |||| ||| ||||| |||| |||| || | ||||| || || || ||||| Sbjct 81360 GAAGCCAAATTGCAAACAGCTATTTCATCAGGAGAACTATATTCTACAATTTCTGTGCAC 81419 Query 62958 AGATTACTACACTTGATAGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCC 63017 | ||| || || ||||| |||||||||| || ||||| ||| || || || ||| Sbjct 81420 AAATTGCTGCATTTGATCGTTCCTAAATGCTGATGATTTGACTTGGCATTGCAGGCGTCC 81479 Query 63018 TTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGACG 63077 || || || || | ||||| || ||||| || || || || | || ||||||| | Sbjct 81480 TTGTATAGCATATAAGGAGTTCCGGTTTCGATTTGTGAATCGAGGATTTCTTTCCACAAA 81539 Query 63078 ACTCGAGCCTTTATTATAGATTTGT-----ATCTCCTTTCTCTTTCGTATAGTGTATACA 63132 | || ||| |||| || | ||| | ||| ||||| |||| | |||| | ||| | Sbjct 81540 ATTCTAGC-TTTA--ATCGTTTTATTTCCCATCCCCTTT-TCTT-CATATAATTCATAGA 81594 Query 63133 ATCGTTCGAACTCGTCTCCCCAAACATTGTCCAA-TCCAGGACATTCATCCGGACACATC 63191 | || |||| |||||||| |||| || ||||| ||||| || || |||| Sbjct 81595 GTTTGTCAAACTTTTCTCCCCAG-CATTCATGAAGTCCAGCACATTTATGAGGGTCCATC 81653 Query 63192 AACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCT 63251 || | ||| | || ||| | ||||||||||| || | ||| |||||||| | ||| Sbjct 81654 AATGTCCAATTCCCATCACTTTGAACTCGTTTCATGAATAAATCTGGAATCCACAAAGCG 81713 Query 63252 ATAAATAGATCTCTGGTTCTATGTTCCTCGTTTC--CTGTATTCTTTTTA---AGATCGA 63306 ||||| |||||| | | || ||| ||| || | |||||| | || | Sbjct 81714 CAAAATAAATCTCTAGCT-----TTTTTCGATTCATCTCCGTGGTTTTTACGCAATTCCA 81768 Query 63307 GGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTT 63366 || ||| || ||||||||||| || || | || ||||| | | || || || | Sbjct 81769 AAAATTCCAATATGTCAGAATGCCATGGCTCAATATAAATGGCGAATGCACCGGGTCGCT 81828 Query 63367 TGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAA 63426 | ||||| || || || | ||| | ||| | | |||| | || | ||||||| | | Sbjct 81829 TATTTCCACCTTGGTCGACGTAACGAGCTGCATAATTAAATACCTGGAGCATTGGAGTTA 81888 Query 63427 TACCGTTTGATATACCATTGGTACCGGAGATATAGCTTCCACTGGCACGAATATTACTAA 63486 || || |||| |||||| || || ||| |||| | || | |||| | || Sbjct 81889 ATCCATTCGATACACCATTTGTTCCATTGATTGGTGATCCAGTCGCTCTAATACAATGAA 81948 Query 63487 TTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTGTCAT 63546 || ||| || || || || |||||| || | || ||| ||| | || | Sbjct 81949 CATTTAAACCGATACCACCAGCATATTTAGAAATAAGAGCACATTCTTTAAGAGTACTAA 82008 Query 63547 AGATACCCTCTATGCTATCATCGATCA-TGTTAAGTAGAAAACAGCTAGACATTTGGTGA 63605 | || || || || || ||||| ||| |||||| ||| ||||| ||||| | | ||| Sbjct 82009 ATATTCCATCAATACTGTCATCTTTCATTGTTAA-TAGGAAACAACTAGAGA---GTTGA 82064 Query 63606 CGACTAGTT----CCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGA 63661 | | || || || ||||||||||| || ||||||||||| |||||||||| || || Sbjct 82065 CCA-TACTTTAACCCAGCATTAAATAATGTTGGAGAAGCGTGTATAAACCATTTCTCTGA 82123 Query 63662 AAGTAGATTGTACGTCT 63678 | || ||| || |||| Sbjct 82124 CATTAAATTATAAGTCT 82140 Score = 105 bits (116), Expect = 8e-18 Identities = 144/196 (73%), Gaps = 5/196 (3%) Strand=Plus/Plus Query 62096 ATAACTCGGATCTGCTATATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCT 62155 |||| ||| | || | ||||| ||||||| |||||||||||| || || | | || Sbjct 79329 ATAATCCGGTGCAGCAACATGGAAATTCATACTTTGACTTTGATCAATAAACGGAGCTCT 79388 Query 62156 GTCTGCAGCCATTTTTATGATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATA-AACTC 62214 ||| ||||||| ||||||||| | ||| |||||||||||| ||||||| | ||||| Sbjct 79389 GTCGGCAGCCAATTTTATGATAACCGATTGATGAATTTCCCAAACAGTTTTAAATAACTC 79448 Query 62215 GCTTAATATCTTCTGGAAG-GTTTG--TATTCTGAATGGATCCACCATCTGCCATAATCC 62271 || || || || ||||| ||| |||| || ||||| |||| || || ||||| Sbjct 79449 -TTTCATTTCATCGGGAAGACCTTGGATATTTTGTATGGAACCACGATTGGCAATAATGG 79507 Query 62272 TATTCTTGATCTCATC 62287 |||||| || ||||| Sbjct 79508 CATTCTTCATATCATC 79523 >seq2867 Length=150518 Score = 102 bits (112), Expect = 1e-16 Identities = 167/236 (71%), Gaps = 10/236 (4%) Strand=Plus/Plus Query 33494 CCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAGATAGttt- 33552 |||| | ||||| || | || | ||||| ||||| |||||||||| ||| ||| Sbjct 86868 CCCATTGTGCCTTTTTCTGAACTCGTGGCATAGTTTCGATGGCATTAA----ATAATTTA 86923 Query 33553 -ttttCATTAC--TATCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCGAATGA 33609 | || || | |||| ||||||||| |||||| || || || |||||| |||||| Sbjct 86924 CTCTTTGTTTCTGTATCAATAACATAAGAATCGATTAATAGCGAATGCATTTCTGAATGA 86983 Query 33610 ATGTTTTCAATGGCCATCTGAAATCCGTAGAA-ACATCTAGCCTCGGTAATCTGTACTTC 33668 ||| ||||||||| || ||||| | ||| || | || ||| || | ||| | ||||| Sbjct 86984 ATGCTTTCAATGGTAATTTGAAAACTGTAAAATGCCTC-AGCTTCAGGAATTTTGACTTC 87042 Query 33669 TGTACAAAATCGTTCCGCCAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAA 33724 | | | |||| || | | ||||||||| | || || |||||||| || |||| Sbjct 87043 TTGAAAGAATCTCTCGACAAGATTTTCATTGTCAATCCCATCACTGGCAGCGAAAA 87098 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622847668611120