Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schmidtea_20mediterranea_20[genbank_20GCA_5F000691995.1_202014-05- 30] 12,782 sequences; 700,725,851 total letters Query= NC_007921.1 Length=147544 Score E Sequences producing significant alignments: (Bits) Value seq4321 86.0 6e-12 seq62 86.0 6e-12 >seq4321 Length=90450 Score = 86.0 bits (94), Expect = 6e-12 Identities = 106/143 (74%), Gaps = 4/143 (3%) Strand=Plus/Plus Query 145627 GATCGACGCCAAATTACAAACTGCCGTCTCCTCGGCGTCGCTGTATTGTACGATCTCGGC 145686 |||||| |||||||| ||||| || | || || | || |||| ||| || || | Sbjct 81356 GATCGAAGCCAAATTGCAAACAGCTATTTCATCAGGAGAACTATATTCTACAATTTCTGT 81415 Query 145687 GCACAAATTGCTACATTTGATGGTTCCCAGATTTTGCTGATT--ACTTTTCCTGTTGCAC 145744 |||||||||||| |||||||| ||||| | || || ||||| |||| | ||||| Sbjct 81416 GCACAAATTGCTGCATTTGATCGTTCCTAAATGCTGATGATTTGACTTGGC--ATTGCAG 81473 Query 145745 GCGTCCTTGTAGAGCATGTACGG 145767 ||||||||||| ||||| || || Sbjct 81474 GCGTCCTTGTATAGCATATAAGG 81496 >seq62 Length=83120 Score = 86.0 bits (94), Expect = 6e-12 Identities = 158/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| || | || || |||| ||||| || || || || ||||| |||||||| Sbjct 2399 CCACCACGAAGTCGAAGTACTAGATGTAATGTGGATTCTTTCTGAATATTGTAATCAGAT 2340 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | || || ||| |||| || || || || | || || || ||||| || ||||| Sbjct 2339 AAAGTTCGTCCGTCTTCTAATTGTTTTCCGGCAAAAATCAATCGTTGCTGATCAGGAGGA 2280 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGC-TTGAGCTGCTCCACAGTATCGGTGGACTCGAT 131186 || ||||||||||| ||| ||| || || | | || | ||||||| || || | Sbjct 2279 ATGCCTTCTTTGTC-TTGAATTTTGGCTTTTACATTTTCAATTGTATCGGAAGATTCAAC 2221 Query 131187 GTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCATG 131235 || | ||| | |||||||| || ||||| || || ||||| |||||| Sbjct 2220 TTCAAGGGTTATTGTTTTACCCGTAAGAGTCTTCACAAAAATTTGCATG 2172 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 471937384154880