Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schmidtea_20mediterranea_20[genbank_20GCA_5F000691995.1_202014-05- 30] 12,782 sequences; 700,725,851 total letters Query= NC_008291.1 Length=198050 Score E Sequences producing significant alignments: (Bits) Value seq2828 221 2e-52 seq4321 187 3e-42 >seq2828 Length=37213 Score = 221 bits (244), Expect = 2e-52 Identities = 426/631 (68%), Gaps = 48/631 (8%) Strand=Plus/Plus Query 32642 TAAATGTTTAAACATCAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAA 32701 ||||| ||||||||||||||| || |||||||| || || || || |||| |||||||| Sbjct 28692 TAAATATTTAAACATCAAACAAGCAAAATCGCAATGAAGTCCTTCATCTCGGCTAATTAA 28751 Query 32702 TTCGTTGGA-AAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACG 32760 ||||||| |||| | | ||||||||||| ||||||||||||||||||||||| || | Sbjct 28752 TTCGTTGCTGAAACATAA-TCCGGGCATTAATCCACGCTTTTTAAGCCAAAATATCGATG 28810 Query 32761 CAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCAT 32820 |||| ||| || || ||||| || || || ||||| |||| || ||| |||| Sbjct 28811 CAAAACTACCACTGAAAAATATTCCCTCGACAGCAGCAAATGCAACAACTCTAGTTCCAA 28870 Query 32821 AACCGGCGCTGTCATGT---ATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAG 32877 || || | | || ||||| ||||| | || || || | || || | Sbjct 28871 AAGTGGATTTTTTATCGCTAATCCAACGCAATGCCCATTGAGCTTTTTTCTGAACGCATG 28930 Query 32878 GCATTGTCTCTATAGCATTAAA------------------GAGATAGtttttttC----- 32914 |||| || || || |||||||| |||||| |||||| Sbjct 28931 GCATAGTTTCGATGGCATTAAATAATTTATTCCTTTTTTCGAGATAATTTTTTATGACAA 28990 Query 32915 --------ATTACTATCTTT----------AACATATGTATCAATCAAAAGACTATACAT 32956 |||||| | ||| |||||| | ||| || || ||| |||||| Sbjct 28991 AGAAAACTATTACTTTGTTTCTGTATCAGTAACATAAGAATCGATTAATAGAGAATACAT 29050 Query 32957 TTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAA-GCATCTAGCCTCGGTAA 33015 ||| ||||||||||||||||| || |||||||| | ||| || || || ||| |||| || Sbjct 29051 TTCTGAATGAATGTTTTCAATTGCAATTTGAAAACTGTAAAATGCCTC-AGCTTCGGGAA 29109 Query 33016 TCTGTACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACTGGCTG 33075 | | |||||| | |||| ||| | | ||||||||| || ||||| |||||||| | Sbjct 29110 TTTTCACTTCTTGAATGAATCTTTCGACGAGATTTTCATTGACAATTCCATCACTGGCAG 29169 Query 33076 CAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTTATTCCAAT 33135 ||||||| || | || || | || ||||| ||| || | | ||| ||||| | Sbjct 29170 CAAAAAATGCAAGAACGTGAGTAATGAAATACCGTTCATCGTCATTCATTTTTTTCCAGT 29229 Query 33136 CATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTT 33195 | | |||||| |||| || ||||| | || ||||||||||| | || || | Sbjct 29230 GAGCAAAATCTTTTGATAAATTAACTTCATTTACAGTCCAAAATGAAGATCGAGCTTTAT 29289 Query 33196 TATACATATTCCAGATGTCATGATATTGAAT 33226 || |||| | ||| || || | |||||| || Sbjct 29290 TAAACATTTCCCATATATCTTCATATTGTAT 29320 Score = 152 bits (168), Expect = 7e-32 Identities = 220/308 (71%), Gaps = 2/308 (1%) Strand=Plus/Plus Query 32920 TATCTTTAACATATGTATCAATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGG 32979 |||| ||||||| | ||| || || ||| ||||||||| ||||||||||||||||| | Sbjct 31094 TATCAGTAACATAAGAATCGATTAATAGAGAATACATTTCTGAATGAATGTTTTCAATTG 31153 Query 32980 CCATTTGAAATCCGTAGAA-GCATCTAGCCTCGGTAATCTGTACTTCTGTACAAAATCGT 33038 | |||||||| | ||| || || || ||| |||| ||| | |||||| | |||| | Sbjct 31154 CAATTTGAAAACTGTAAAATGCCTC-AGCTTCGGGAATTTTCACTTCTTGAATGAATCTT 31212 Query 33039 TCTGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTT 33098 || | | ||||||||| || ||||| |||||||| |||||||| || | || || | Sbjct 31213 TCGACGAGATTTTCATTGACAATTCCATCACTGGCAGCAAAAAATGCAAGAACGTGAGTA 31272 Query 33099 ATAAAATATTTTTCGTCTGGTGTTAGTTTATTCCAATCATTGATATCTTTAGATATATCC 33158 || ||||| ||| || | | ||| ||||| | | | |||||| |||| || Sbjct 31273 ATGAAATACCGTTCATCGTCATTCATTTTTTTCCAGTGAGCAAAATCTTTTGATAAATTA 31332 Query 33159 ACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTCCAGATGTCATGA 33218 ||||| | || ||||||||||| | || || ||| |||| | ||| || || | | Sbjct 31333 ACTTCATTTACAGTCCAAAATGAAGATCGAGCTTTATTAAACATTTCCCATATATCTTCA 31392 Query 33219 TATTGAAT 33226 ||||| || Sbjct 31393 TATTGTAT 31400 >seq4321 Length=90450 Score = 187 bits (206), Expect = 3e-42 Identities = 527/796 (66%), Gaps = 30/796 (4%) Strand=Plus/Plus Query 62753 GATGCCAGATTACAAACGGCTACCTCATTAGCATCCGCATATTGTATTATCTCAGTGCAA 62812 || |||| ||| ||||| |||| |||| || | ||||| || || || ||||| Sbjct 81360 GAAGCCAAATTGCAAACAGCTATTTCATCAGGAGAACTATATTCTACAATTTCTGTGCAC 81419 Query 62813 AGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCC 62872 | ||| || || ||||| |||||||||| || ||||| ||| || || || ||| Sbjct 81420 AAATTGCTGCATTTGATCGTTCCTAAATGCTGATGATTTGACTTGGCATTGCAGGCGTCC 81479 Query 62873 TTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGACG 62932 || || || || | ||||| || ||||| || || || || | || ||||||| | Sbjct 81480 TTGTATAGCATATAAGGAGTTCCGGTTTCGATTTGTGAATCGAGGATTTCTTTCCACAAA 81539 Query 62933 ACTCGAGCCTTTATTATAGATTTGTATCTCTT----TTCTCTTTCGTATAGTGTATACAA 62988 | || ||| |||| || | ||| | || | | || |||| | |||| | ||| | Sbjct 81540 ATTCTAGC-TTTA--ATCGTTTTATTTCCCATCCCCTTTTCTT-CATATAATTCATAGAG 81595 Query 62989 TCGTTCGAACTCGTCTCCCCAAACATTG-TCCAGTCCAGGACATTCATCCGGACACATCA 63047 | || |||| |||||||| |||| | ||||||| ||||| || || ||||| Sbjct 81596 TTTGTCAAACTTTTCTCCCCAG-CATTCATGAAGTCCAGCACATTTATGAGGGTCCATCA 81654 Query 63048 ACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTA 63107 | | ||| | || ||| | ||||||||||| || | ||| |||||||| | ||| Sbjct 81655 ATGTCCAATTCCCATCACTTTGAACTCGTTTCATGAATAAATCTGGAATCCACAAAGCGC 81714 Query 63108 TAAATAGATCTCTGGTTCTATGTTCCTCGTTTC--CTGTATTCTTTTTA---AGATCGAG 63162 ||||| |||||| | | || ||| ||| || | |||||| | || | Sbjct 81715 AAAATAAATCTCTAGCT-----TTTTTCGATTCATCTCCGTGGTTTTTACGCAATTCCAA 81769 Query 63163 GAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTT 63222 || ||| || ||||||||||| || || | || ||||| | | || || || || Sbjct 81770 AAATTCCAATATGTCAGAATGCCATGGCTCAATATAAATGGCGAATGCACCGGGTCGCTT 81829 Query 63223 GTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAAT 63282 ||||| || || || | ||| | ||| | | |||| | || | ||||||| | | Sbjct 81830 ATTTCCACCTTGGTCGACGTAACGAGCTGCATAATTAAATACCTGGAGCATTGGAGTTAA 81889 Query 63283 ACCATTGGATGTACCATTGGTCCCTGAGATATAGCTTCCACTGGCACGAATATTACTAAT 63342 ||||| ||| |||||| || || ||| |||| | || | |||| | || Sbjct 81890 TCCATTCGATACACCATTTGTTCCATTGATTGGTGATCCAGTCGCTCTAATACAATGAAC 81949 Query 63343 TGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATA 63402 || ||| || || || || |||||| || | || ||| ||| | ||| | | Sbjct 81950 ATTTAAACCGATACCACCAGCATATTTAGAAATAAGAGCACATTCTTTAAGAGTACTAAA 82009 Query 63403 GATGCCCTCTATACTATCATCCATCA-TGTTAAGTAGAAAACAGCTAGACATTTGGTGAC 63461 || || || ||||| ||||| ||| |||||| ||| ||||| ||||| | | |||| Sbjct 82010 TATTCCATCAATACTGTCATCTTTCATTGTTAA-TAGGAAACAACTAGAGA---GTTGAC 82065 Query 63462 GACTAGTT----CCCGCATTAAATAAGGTAGGAGAAGCGTGAGTAAACCATTTTTCAGAA 63517 | || || || ||||||||||| || ||||||||||| |||||||||| || || Sbjct 82066 CA-TACTTTAACCCAGCATTAAATAATGTTGGAGAAGCGTGTATAAACCATTTCTCTGAC 82124 Query 63518 AGTAGATTGTACGTCT 63533 | || ||| || |||| Sbjct 82125 ATTAAATTATAAGTCT 82140 Score = 102 bits (112), Expect = 1e-16 Identities = 143/196 (73%), Gaps = 5/196 (3%) Strand=Plus/Plus Query 61951 ATAACTCGGATCTGCTATATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCT 62010 |||| ||| | || | ||||| ||||||| |||||||||||| || || | | || Sbjct 79329 ATAATCCGGTGCAGCAACATGGAAATTCATACTTTGACTTTGATCAATAAACGGAGCTCT 79388 Query 62011 GTCTGCAGCCATTTTTATAATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATA-AACTC 62069 ||| ||||||| |||||| || | ||| |||||||||||| ||||||| | ||||| Sbjct 79389 GTCGGCAGCCAATTTTATGATAACCGATTGATGAATTTCCCAAACAGTTTTAAATAACTC 79448 Query 62070 GCTTAATATCTTCTGGAAG-GTTTG--TATTCTGAATGGATCCACCATCTGCCATAATCC 62126 || || || || ||||| ||| |||| || ||||| |||| || || ||||| Sbjct 79449 -TTTCATTTCATCGGGAAGACCTTGGATATTTTGTATGGAACCACGATTGGCAATAATGG 79507 Query 62127 TATTCTTGATCTCATC 62142 |||||| || ||||| Sbjct 79508 CATTCTTCATATCATC 79523 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 633530761447200