Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schmidtea_20mediterranea_20[genbank_20GCA_5F000691995.1_202014-05- 30] 12,782 sequences; 700,725,851 total letters Query= NC_008518.1 Length=174059 Score E Sequences producing significant alignments: (Bits) Value seq2828 194 2e-44 seq2867 84.2 2e-11 >seq2828 Length=37213 Score = 194 bits (214), Expect = 2e-44 Identities = 425/640 (66%), Gaps = 49/640 (8%) Strand=Plus/Plus Query 93066 TTTGTACGACATAATTGTACATTAAGCACGCAAAGTCGGTATGTAAACCTTCGTCTCGTG 93125 ||| ||| | ||| || |||| || || ||||| ||| ||| | ||||| ||||| Sbjct 28685 TTTCTACTAAATATTTAAACATCAAACAAGCAAAATCGCAATGAAGTCCTTCATCTCGGC 28744 Query 93126 ATATCAACTCATTGCTGAATGTTAAACCTGGTAACAGTCCTCGTTTCTTGAGCCAAAATA 93185 || || || |||||||| ||| || || | | ||| || || || |||||||||| Sbjct 28745 TAATTAATTCGTTGCTGAAACATAATCCGGGCATTAATCCACGCTTTTTAAGCCAAAATA 28804 Query 93186 TTGAAGCAAAACTACCAGaaaaaaaTATACCTTCCACGGCTGCAAATGCCACAATAC--G 93243 | || |||||||||||| |||||||| || || || || |||||||| |||| | | Sbjct 28805 TCGATGCAAAACTACCACTGAAAAATATTCCCTCGACAGCAGCAAATGCAACAACTCTAG 28864 Query 93244 TTCGGCAAAATTTGCGGAATTACTGCTGATCCATTTTAAAGCCCAATCGGCTTTTTTCTT 93303 ||| ||||| | | ||| ||| ||||| || ||||| | |||||||||| Sbjct 28865 TTC--CAAAAGTGGATTTTTTATCGCTAATCCAACGCAATGCCCATTGAGCTTTTTTCTG 28922 Query 93304 AATACAAGGTAGTGTTTCGATAGCGTTAAATAGGTAATCTCGCTCGTCCGA--------- 93354 || || || | |||||||| || ||||||| | || || | | ||| Sbjct 28923 AACGCATGGCATAGTTTCGATGGCATTAAATAATTTAT-TCCTTTTTTCGAGATAATTTT 28981 Query 93355 -------------ATCTCGTA---------TGTAT-----------GTATCGATTAACAG 93381 | || || ||||| | ||||||||| || Sbjct 28982 TTATGACAAAGAAAACTATTACTTTGTTTCTGTATCAGTAACATAAGAATCGATTAATAG 29041 Query 93382 AGAATACATTTCAGAATGGACATTCTCCATTGCAATTTGGAATCCGTAGAA-ACATCTAG 93440 |||||||||||| ||||| | || || ||||||||||| || | ||| || | || || Sbjct 29042 AGAATACATTTCTGAATGAATGTTTTCAATTGCAATTTGAAAACTGTAAAATGCCTC-AG 29100 Query 93441 CTTCCGTGATCTGCACTTCTTGAGAAAATCTCTCTACGAGATTTTCATTGACTATACCAT 93500 |||| | || | |||||||||| ||||| || ||||||||||||||||| || |||| Sbjct 29101 CTTCGGGAATTTTCACTTCTTGAATGAATCTTTCGACGAGATTTTCATTGACAATTCCAT 29160 Query 93501 CGGATGCTGCaaaaaaaGCCAATATATGCTTTATAAAATGTTTCTCATCATCTTTAAGCT 93560 | || |||||||| || | | || | || |||| ||||| || || | | Sbjct 29161 CACTGGCAGCAAAAAATGCAAGAACGTGAGTAATGAAATACCGTTCATCGTCATTCATTT 29220 Query 93561 TATCCCAATCGGATAGATCTTTTGAAAGATCGACTTCTTCGACAGTCCAAAACGATGCTT 93620 | | ||| | | | ||||||||| | || ||||| | ||||||||||| || | | Sbjct 29221 TTTTCCAGTGAGCAAAATCTTTTGATAAATTAACTTCATTTACAGTCCAAAATGAAGATC 29280 Query 93621 CTGCTTTTTTGTACATATCCCATATGTCTTGATATTGAAT 93660 ||||| || |||| |||||||| |||| |||||| || Sbjct 29281 GAGCTTTATTAAACATTTCCCATATATCTTCATATTGTAT 29320 Score = 159 bits (176), Expect = 4e-34 Identities = 212/292 (73%), Gaps = 2/292 (1%) Strand=Plus/Plus Query 93370 ATCGATTAACAGAGAATACATTTCAGAATGGACATTCTCCATTGCAATTTGGAATCCGTA 93429 ||||||||| |||||||||||||| ||||| | || || ||||||||||| || | ||| Sbjct 31110 ATCGATTAATAGAGAATACATTTCTGAATGAATGTTTTCAATTGCAATTTGAAAACTGTA 31169 Query 93430 GAA-ACATCTAGCTTCCGTGATCTGCACTTCTTGAGAAAATCTCTCTACGAGATTTTCAT 93488 || | || |||||| | || | |||||||||| ||||| || ||||||||||||| Sbjct 31170 AAATGCCTC-AGCTTCGGGAATTTTCACTTCTTGAATGAATCTTTCGACGAGATTTTCAT 31228 Query 93489 TGACTATACCATCGGATGCTGCaaaaaaaGCCAATATATGCTTTATAAAATGTTTCTCAT 93548 |||| || ||||| || |||||||| || | | || | || |||| |||| Sbjct 31229 TGACAATTCCATCACTGGCAGCAAAAAATGCAAGAACGTGAGTAATGAAATACCGTTCAT 31288 Query 93549 CATCTTTAAGCTTATCCCAATCGGATAGATCTTTTGAAAGATCGACTTCTTCGACAGTCC 93608 | || || | || | ||| | | | ||||||||| | || ||||| | ||||||| Sbjct 31289 CGTCATTCATTTTTTTCCAGTGAGCAAAATCTTTTGATAAATTAACTTCATTTACAGTCC 31348 Query 93609 AAAACGATGCTTCTGCTTTTTTGTACATATCCCATATGTCTTGATATTGAAT 93660 |||| || | | ||||| || |||| |||||||| |||| |||||| || Sbjct 31349 AAAATGAAGATCGAGCTTTATTAAACATTTCCCATATATCTTCATATTGTAT 31400 >seq2867 Length=150518 Score = 84.2 bits (92), Expect = 2e-11 Identities = 100/133 (75%), Gaps = 2/133 (2%) Strand=Plus/Plus Query 93370 ATCGATTAACAGAGAATACATTTCAGAATGGACATTCTCCATTGCAATTTGGAATCCGTA 93429 ||||||||| || |||| |||||| ||||| | | || || | |||||| || | ||| Sbjct 86953 ATCGATTAATAGCGAATGCATTTCTGAATGAATGCTTTCAATGGTAATTTGAAAACTGTA 87012 Query 93430 GAAA-CATCTAGCTTCCGTGATCTGCACTTCTTGAGAAAATCTCTCTACGAGATTTTCAT 93488 || | || |||||| | || | ||||||||| | |||||||| || |||||||||| Sbjct 87013 AAATGCCTC-AGCTTCAGGAATTTTGACTTCTTGAAAGAATCTCTCGACAAGATTTTCAT 87071 Query 93489 TGACTATACCATC 93501 || | || ||||| Sbjct 87072 TGTCAATCCCATC 87084 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 556771827565680