Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schmidtea_20mediterranea_20[genbank_20GCA_5F000691995.1_202014-05- 30] 12,782 sequences; 700,725,851 total letters Query= NC_009011.2 Length=131331 Score E Sequences producing significant alignments: (Bits) Value seq62 134 1e-26 seq9680 127 2e-24 seq7457 127 2e-24 seq6040 125 6e-24 seq10343 120 3e-22 seq2208 104 2e-17 seq6797 102 7e-17 >seq62 Length=83120 Score = 134 bits (148), Expect = 1e-26 Identities = 175/242 (72%), Gaps = 0/242 (0%) Strand=Plus/Minus Query 114152 AATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATC 114211 |||||| ||||| |||| | |||| ||||| || |||||||| ||||| |||||||| Sbjct 2403 AATACCACCACGAAGTCGAAGTACTAGATGTAATGTGGATTCTTTCTGAATATTGTAATC 2344 Query 114212 GCTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGG 114271 | ||| || ||||| | |||||| || || | || | || || || || || Sbjct 2343 AGATAAAGTTCGTCCGTCTTCTAATTGTTTTCCGGCAAAAATCAATCGTTGCTGATCAGG 2284 Query 114272 AGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTC 114331 |||||||||||||||||| ||| || ||||| | ||||| || |||| ||||| Sbjct 2283 AGGAATGCCTTCTTTGTCTTGAATTTTGGCTTTTACATTTTCAATTGTATCGGAAGATTC 2224 Query 114332 GACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATGGCTTAATT 114391 || || | ||| | ||||| || || ||||| || |||||||| |||||| |||| | Sbjct 2223 AACTTCAAGGGTTATTGTTTTACCCGTAAGAGTCTTCACAAAAATTTGCATGTTTTAAAT 2164 Query 114392 AT 114393 || Sbjct 2163 AT 2162 >seq9680 Length=90248 Score = 127 bits (140), Expect = 2e-24 Identities = 161/219 (74%), Gaps = 2/219 (1%) Strand=Plus/Plus Query 114165 AGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGA 114224 ||||| | || ||||| | ||| ||||||||| |||||||| || || || ||| Sbjct 41726 AGTCTAAGTACCAAATGGAGAGTACTTTCTTTTTGGATGTTGTAGTCAGACAATGTTCGA 41785 Query 114225 GAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCT 114284 |||||| | |||||| |||||| |||| || | |||||| || || ||||||||||| Sbjct 41786 CCATCTTCTAATTGTTTTCCAGCGAAGATTAGTCTCTGTTGATCTGGTGGAATGCCTTCC 41845 Query 114285 TTGTCGGCAATCTTTTGTTTTAGC-TGTTCAACGGTGTCGGTGGATTCGACGTCCACGGT 114343 ||||| ||| ||| | |||| | | ||||| ||| || | || || || || | || Sbjct 41846 TTGTCTTGAAT-TTTGGCTTTAACATTTTCAATGGTATCTGAAGACTCAACTTCAAGTGT 41904 Query 114344 CACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 | ||||| || || || ||||| |||||||||||||| Sbjct 41905 AATTGTTTTACCCGTTAGGGTTTTAACAAAAATCTGCAT 41943 >seq7457 Length=83733 Score = 127 bits (140), Expect = 2e-24 Identities = 151/205 (74%), Gaps = 0/205 (0%) Strand=Plus/Minus Query 114172 AAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTT 114231 |||| ||||| | ||||||||||||||||| || ||||| || |||||| ||||| Sbjct 44491 AAACCAAATGGAGTGTAGATTCTTTTTGAATATTATAATCAGACAAAGTACGTCCATCTT 44432 Query 114232 CAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGG 114291 | | |||||| | ||| | ||||| | ||||| || ||||||| | |||||| || Sbjct 44431 CTAATTGTTTGCTAGCAAAAATGAGTCTTTGTTGATCGGGAGGAAATCATTCTTTATCTT 44372 Query 114292 CAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTT 114351 ||||||| ||| | || ||||| |||||| ||| | || || | || | ||||| Sbjct 44371 GAATCTTTGCTTTCACCTTTTCAATGGTGTCACCTGATGCAACCTCGAGTGTAATCGTTT 44312 Query 114352 TGCCGGTCAGAGTTTTTACAAAAAT 114376 | ||||||| |||||| ||||| || Sbjct 44311 TACCGGTCAAAGTTTTCACAAATAT 44287 >seq6040 Length=121922 Score = 125 bits (138), Expect = 6e-24 Identities = 162/224 (72%), Gaps = 0/224 (0%) Strand=Plus/Plus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 ||||| || | || || ||| | ||||| | |||||||||||||||||||| ||||| Sbjct 23241 ATACCACCTCTTAATCGTAAACCCAAATGGAGTGTAGATTCTTTTTGAATGTTATAATCA 23300 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 || |||||| |||||| | |||||| ||||| | ||||| | ||||| | ||| Sbjct 23301 GACAAAGTACGTCCATCTTCTAATTGTTTGCCAGCAAAAATGAGTCTTTGTTGATAGGGA 23360 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332 |||| |||| ||| || ||||||| ||| | || ||||| |||||| ||| | Sbjct 23361 GGAAATCCTTTTTTATCTTGAATCTTTGCTTTCACCTTTTCAATGGTGTCACCTGATGCA 23420 Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAAT 114376 || || | || | |||||| ||| || |||||| ||||| || Sbjct 23421 ACCTCGAGTGTAATCGTTTTACCGTCCAAAGTTTTCACAAATAT 23464 >seq10343 Length=31290 Score = 120 bits (132), Expect = 3e-22 Identities = 165/231 (71%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 114152 AATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATC 114211 |||||| || | || || ||||| ||||| | || || ||||||||||| || ||||| Sbjct 25790 AATACCTCCTCTTAATCGTAAAACCAAATGCAATGTTGACTCTTTTTGAATATTATAATC 25731 Query 114212 GCTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGG 114271 | ||||||| |||||| | ||| || ||||| | || | |||||||||||| || Sbjct 25730 TGATAAAGTACGACCATCTTCCAATTGCTTGCCAGCAAAAATCAAACGCTGTTGGTCTGG 25671 Query 114272 AGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTC 114331 ||||| |||||||| || ||||||| ||| | | ||||| | || | || || Sbjct 25670 TGGAATTCCTTCTTTATCTTGAATCTTTGATTTAACATTTTCAATAGAATCAGATGACTC 25611 Query 114332 GACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || || | || | ||||| || || | ||||| ||||| |||||||| Sbjct 25610 AACTTCAAGTGTTATAGTTTTCCCTGTTAATGTTTTAACAAAGATCTGCAT 25560 >seq2208 Length=35245 Score = 104 bits (114), Expect = 2e-17 Identities = 158/224 (71%), Gaps = 1/224 (0%) Strand=Plus/Plus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 ||||| | | || || ||| | ||||| | | |||||| ||||||||||| ||||| Sbjct 34780 ATACCACTTCTTAATCCTAAACCCAAATGGAGTGCAGATTCCTTTTGAATGTTATAATCA 34839 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 || ||| || |||||| | |||||| ||||| | || || | ||||| || ||| Sbjct 34840 GACAAAGTCCG-TTATCTTCTAATTGTTTGCCAGCAAAAATTAGTCTTTGTTGATCGGGA 34898 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332 |||| |||| ||| || ||||||| || | || ||||| |||||| ||||| Sbjct 34899 GGAAATCCTTATTTATCTTGAATCTTTGCCTTCACCTTTTCAATGGTGTCACCCGATTCA 34958 Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAAT 114376 || || | || | || ||| ||| ||| |||||| ||||| || Sbjct 34959 ACCTCGAGTGTAATCGATTTACCGTTCAAAGTTTTCACAAATAT 35002 >seq6797 Length=69885 Score = 102 bits (112), Expect = 7e-17 Identities = 156/221 (71%), Gaps = 1/221 (0%) Strand=Plus/Minus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 ||||| || | || || ||||||||||||| |||||||| |||||||| || ||||| Sbjct 41170 ATACCACCTCTTAATCGTAAAACTAAATGTAGTGTAGATTCCTTTTGAATATTATAATCA 41111 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 || ||| | |||||| | |||||| ||||| | ||||| | ||| || || Sbjct 41110 GACAACGTATGTCCATCTTCTAATTGTTTGCCAGCAAAAATGAGTCTTATTTGATCGAGA 41051 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332 |||| |||||||| || |||||| ||| | || ||||| | |||| ||| | Sbjct 41050 GGAAATCCTTCTTTATCTTGAATCTTAGCTTTCACCTTTTCAATGTTGTCACCTGATGCA 40991 Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAA 114373 | || | || | |||||| ||||| | |||||| ||||| Sbjct 40990 ATCTCGAGTGT-ATCGTTTTACCGGTAAAAGTTTTCACAAA 40951 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 420068951200584