Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schmidtea_20mediterranea_20[genbank_20GCA_5F000691995.1_202014-05- 30] 12,782 sequences; 700,725,851 total letters Query= NC_010240.1 Length=169794 Score E Sequences producing significant alignments: (Bits) Value seq10343 91.5 2e-13 seq7315 87.8 2e-12 seq12383 84.2 2e-11 seq4061 84.2 2e-11 seq62 84.2 2e-11 >seq10343 Length=31290 Score = 91.5 bits (100), Expect = 2e-13 Identities = 161/232 (69%), Gaps = 2/232 (1%) Strand=Plus/Minus Query 41981 ACCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGC 42040 |||||||||||| || || |||||||||||||| ||| ||||||||||| ||||| | Sbjct 25787 ACCTCCTCTTAATCGTAAAACCAAATGCAATGTTGACTCTTTTTGAATATTATAATCTGA 25728 Query 42041 CAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGG 42100 | ||| || | || || | ||||| ||||| || || | ||||| ||||| | ||| Sbjct 25727 TAAAGTACGACCATCTTCCAATTGCTTGCCAGCAAAAATCAAACGCTGTTGGTCTGGTGG 25668 Query 42101 CACGCTCTCCTTGTCCATGATTTTTTG-TTTGAGCGTCGCCACCGTGTCGCTCGATTCCA 42159 | | || ||| | ||| | |||| ||| | | | | | || || || | Sbjct 25667 AATTC-CTTCTTTATCTTGAATCTTTGATTTAACATTTTCAATAGAATCAGATGACTCAA 25609 Query 42160 CATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCATTTT 42211 | || | || || ||||| || |||| || || |||||||| |||||||| Sbjct 25608 CTTCAAGTGTTATAGTTTTCCCTGTTAATGTTTTAACAAAGATCTGCATTTT 25557 >seq7315 Length=10968 Score = 87.8 bits (96), Expect = 2e-12 Identities = 156/225 (69%), Gaps = 2/225 (1%) Strand=Plus/Plus Query 41981 ACCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGC 42040 ||| |||||||| || || |||||||| | ||| | |||||||||||| | |||| || Sbjct 2991 ACCACCTCTTAATCGTAAAACCAAATGAAGTGTACATTCCTTTTGAATAATATAATAAGA 3050 Query 42041 CAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGG 42100 || ||| || | || |||| || || ||||| || ||||||| || || |||| || Sbjct 3051 CAAAGTACGTCCTTCTTCTAATTGTTTGCCAGCAAAAATGAGTCTTTGTTGATCGGGAGG 3110 Query 42101 CACGCTCTCCTTGTCCATGATTTTTTG-TTTGAGCGTCGCCACCGTGTCGCTCGATTCCA 42159 | | || ||| | ||| | |||| ||| | | | | | ||||| | ||| | | Sbjct 3111 AAATC-CTTCTTTATCTTGAATCTTTGCTTTCACCTTTTCAATGGTGTCACCTGATGCAA 3169 Query 42160 CATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTT 42204 | |||| || || ||||| || || | || || ||||| |||| Sbjct 3170 CCTCGAAAGTAATCGTTTTACCGGTCAAAGTTTTCACAAATATTT 3214 >seq12383 Length=19971 Score = 84.2 bits (92), Expect = 2e-11 Identities = 155/225 (69%), Gaps = 2/225 (1%) Strand=Plus/Plus Query 41981 ACCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGC 42040 ||| |||||||| || || ||||||| | ||| |||||||||||||| ||||||| Sbjct 8162 ACCACCTCTTAATCGTAAACCCAAATGGAGTGTAGATTCCTTTTGAATATTATAATCAGA 8221 Query 42041 CAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGG 42100 || ||| || | || |||| || || ||||| || ||||||| || || |||| || Sbjct 8222 CAAAGTACGTCCATCTTCTAATTGTTTGCCAGCAAAAATGAGTCTTTGTTGATCGGGAGG 8281 Query 42101 CACGCTCTCCTTGTCCATGATTTTTTG-TTTGAGCGTCGCCACCGTGTCGCTCGATTCCA 42159 | | || ||| | ||| | |||| ||| | | | | | ||||| | ||| | | Sbjct 8282 AAATC-CTTCTTTATCTTGAATCTTTGCTTTCACCTTTTCAATGGTGTCACCTGATGCAA 8340 Query 42160 CATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTT 42204 | |||| || || ||||| || | | || || ||||| |||| Sbjct 8341 CCTCGAGTGTAATCGTTTTACCGTTCAAAGTTTTCACAAATATTT 8385 >seq4061 Length=86116 Score = 84.2 bits (92), Expect = 2e-11 Identities = 155/225 (69%), Gaps = 2/225 (1%) Strand=Plus/Plus Query 41981 ACCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGC 42040 ||| |||||||| || || ||||||| | ||| |||||||||||||| ||||||| Sbjct 51701 ACCACCTCTTAATCGTAAACCCAAATGGAGTGTAGATTCCTTTTGAATATTATAATCAGA 51760 Query 42041 CAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGG 42100 || ||| || | || |||| || || ||||| || ||||||| || || |||| || Sbjct 51761 CAAAGTACGTCCATCTTCTAATTGTTTGCCAGCAAAAATGAGTCTTTGTTGATCGGGAGG 51820 Query 42101 CACGCTCTCCTTGTCCATGATTTTTTG-TTTGAGCGTCGCCACCGTGTCGCTCGATTCCA 42159 | | || ||| | ||| | |||| ||| | | | | | ||||| | ||| | | Sbjct 51821 AAATC-CTTCTTTATCTTGAATCTTTGCTTTCACCTTTTCAATGGTGTCACCTGATGCAA 51879 Query 42160 CATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTT 42204 | |||| || || ||||| || | | || || ||||| |||| Sbjct 51880 CCTCGAGTGTAATCGTTTTACCGTTCAAAGTTTTCACAAATATTT 51924 >seq62 Length=83120 Score = 84.2 bits (92), Expect = 2e-11 Identities = 145/208 (70%), Gaps = 2/208 (1%) Strand=Plus/Minus Query 42005 ATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTG 42064 ||| |||||| || || |||||||||||||||| | ||| || |||| |||| || Sbjct 2376 ATGTAATGTGGATTCTTTCTGAATATTGTAATCAGATAAAGTTCGTCCGTCTTCTAATTG 2317 Query 42065 CTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTT 42124 || || || || || | ||| ||||| || | || | || || |||| | ||| ||| Sbjct 2316 TTTTCCGGCAAAAATCAATCGTTGCTGATCAGGAGGAATGCCTTCTTTGT-CTTGAATTT 2258 Query 42125 TTG-TTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCG 42183 | | ||| | | | | || ||| ||||| || || | || || ||||| |||| Sbjct 2257 TGGCTTTTACATTTTCAATTGTATCGGAAGATTCAACTTCAAGGGTTATTGTTTTACCCG 2198 Query 42184 TTAGCGTCTTTACAAAGATTTGCATTTT 42211 | || ||||| ||||| |||||||| || Sbjct 2197 TAAGAGTCTTCACAAAAATTTGCATGTT 2170 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 543126008174880