Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schmidtea_20mediterranea_20[genbank_20GCA_5F000691995.1_202014-05- 30] 12,782 sequences; 700,725,851 total letters Query= NC_011345.1 Length=155122 Score E Sequences producing significant alignments: (Bits) Value seq9680 96.9 3e-15 seq2828 95.1 1e-14 seq62 93.3 4e-14 seq10343 89.7 5e-13 seq12383 82.4 8e-11 seq7787 82.4 8e-11 seq4061 82.4 8e-11 >seq9680 Length=90248 Score = 96.9 bits (106), Expect = 3e-15 Identities = 138/192 (72%), Gaps = 2/192 (1%) Strand=Plus/Plus Query 138424 TCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAG 138483 || ||||| ||||||||||| || || || || || | |||||| || | || Sbjct 41753 TCTTTTTGGATGTTGTAGTCAGACAATGTTCGACCATCTTCTAATTGTTTTCCAGCGAAG 41812 Query 138484 ATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAA-TTG 138542 ||||| | |||||| || || || || ||||| ||||| ||| |||| | ||||| | Sbjct 41813 ATTAGTCTCTGTTGATCTGGTGGAATGCCTTCCTTGTC-TTGAATTTTGGCTTTAACATT 41871 Query 138543 TTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTAC 138602 ||| | ||| || | ||||| || || | || | |||||||| || || ||||| || Sbjct 41872 TTCAATGGTATCTGAAGACTCAACTTCAAGTGTAATTGTTTTACCCGTTAGGGTTTTAAC 41931 Query 138603 AAAAATCTGCAT 138614 |||||||||||| Sbjct 41932 AAAAATCTGCAT 41943 >seq2828 Length=37213 Score = 95.1 bits (104), Expect = 1e-14 Identities = 163/234 (70%), Gaps = 2/234 (1%) Strand=Plus/Minus Query 52606 TGTTCAAGGAGGCGGTGGCTATCGAAAAGGAGTTTTTTACGGCCGCGCTGCCGGTCGAGC 52665 || |||| || || || | ||||| ||||| ||| | || | ||| ||||||| Sbjct 28608 TGATCAAAGAAGCTGTCGGAATCGAGAAGGAATTTCTCACCGACGCATTGCCGGTTTCAT 28549 Query 52666 TGCTGGGCATGAACGCGCAGTCCATGTGCGAGTACATCGAGTTTGTGGCGGATCGTCTGT 52725 || | ||||||||||| | || ||||| ||||| || || |||||||| || || ||| Sbjct 28548 TGATTGGCATGAACGCTGAATCGATGTGTGAGTATATTGAATTTGTGGCCGACCGGCTGC 28489 Query 52726 TGGTGCAGCTCGGGCAGCCA-AAGTACTTCAACGCTCGCAATCCGTTTGAGTTTATGAAC 52784 |||| | | |||| | | |||| || ||| | || ||||| || || ||| | Sbjct 28488 TGGTTGA-ATTGGGCTGTGACAAGTTCTGGAACACAGAGAACCCGTTGGATTTCATGGAT 28430 Query 52785 AACATTTCGCTTGAGGGCAAGACCAACTTTTTCGAGAAGCGAGTCGGCGAGTAT 52838 || |||| | || || || || ||||| || ||||| |||||||| || ||| Sbjct 28429 AATATTTGCATCGATGGGAAAACTAACTTCTTTGAGAAACGAGTCGGTGAATAT 28376 >seq62 Length=83120 Score = 93.3 bits (102), Expect = 4e-14 Identities = 156/222 (70%), Gaps = 3/222 (1%) Strand=Plus/Minus Query 138406 ACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCG 138465 |||| ||||| | || || || ||||| ||||| || | ||| || ||| || Sbjct 2381 ACTAGATGTAATGTGGATTCTTTCTGAATATTGTAATCAGATAAAGTTCGTCCGTCTTCT 2322 Query 138466 AGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTG 138525 | |||||| |||| | | || | || || || || ||||| || ||||||||||| || Sbjct 2321 AATTGTTTTCCGGCAAAAATCAATCGTTGCTGATCAGGAGGAATGCCTTCTTTGTC-TTG 2263 Query 138526 ATTTTTTG-TTTTAATTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTT 138584 | |||| | ||||| | ||| | || |||| || || || || | || | ||||| Sbjct 2262 AATTTTGGCTTTTACATTTTCAATTGTATCGGAAGATTCAACTTCAAGGGTTATTGTTTT 2203 Query 138585 ACCAGTCAGAGTTTTTACAAAAATCTGCATGGCTTATAATAT 138626 ||| || ||||| || |||||||| |||||| ||| ||||| Sbjct 2202 ACCCGTAAGAGTCTTCACAAAAATTTGCATGTTTTA-AATAT 2162 >seq10343 Length=31290 Score = 89.7 bits (98), Expect = 5e-13 Identities = 158/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || |||| || || ||||| ||||| | ||||||| |||||||| || || || Sbjct 25786 CCTCCTCTTAATCGTAAAACCAAATGCAATGTTGACTCTTTTTGAATATTATAATCTGAT 25727 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | |||||| || || | ||| || || | | | || | |||||||||||| || || Sbjct 25726 AAAGTACGACCATCTTCCAATTGCTTGCCAGCAAAAATCAAACGCTGTTGGTCTGGTGGA 25667 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTAA-TTGTTCCACGGTGTCGGTCGACTCCAC 138566 || |||||||| || ||| | |||| ||||| | ||| | | || | ||||| || Sbjct 25666 ATTCCTTCTTTATC-TTGAATCTTTGATTTAACATTTTCAATAGAATCAGATGACTCAAC 25608 Query 138567 CTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 || | || | ||||| || || | ||||| ||||| |||||||| Sbjct 25607 TTCAAGTGTTATAGTTTTCCCTGTTAATGTTTTAACAAAGATCTGCAT 25560 >seq12383 Length=19971 Score = 82.4 bits (90), Expect = 8e-11 Identities = 153/222 (69%), Gaps = 2/222 (1%) Strand=Plus/Plus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || |||| || || ||| | ||||| | | || ||||||||||| || || || | Sbjct 8163 CCACCTCTTAATCGTAAACCCAAATGGAGTGTAGATTCCTTTTGAATATTATAATCAGAC 8222 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | |||||| || || | |||||| || | | | || || | ||||| || ||||| Sbjct 8223 AAAGTACGTCCATCTTCTAATTGTTTGCCAGCAAAAATGAGTCTTTGTTGATCGGGAGGA 8282 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTG-TTTTAATTGTTCCACGGTGTCGGTCGACTCCAC 138566 | |||||||| || ||| | |||| ||| | | ||| | |||||| || | || Sbjct 8283 AATCCTTCTTTATC-TTGAATCTTTGCTTTCACCTTTTCAATGGTGTCACCTGATGCAAC 8341 Query 138567 CTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAAT 138608 ||||| || | ||||||||| ||| |||||| ||||| || Sbjct 8342 CTCGAGTGTAATCGTTTTACCGTTCAAAGTTTTCACAAATAT 8383 >seq7787 Length=20266 Score = 82.4 bits (90), Expect = 8e-11 Identities = 153/222 (69%), Gaps = 2/222 (1%) Strand=Plus/Plus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || |||| || || ||| | ||||| | | || ||||||||||| || || || | Sbjct 11498 CCACCTCTTAATCGTAAACCCAAATGGAGTGTAGATTCCTTTTGAATATTATAATCAGAC 11557 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | |||||| || || | |||||| || | | | || || | ||||| || ||||| Sbjct 11558 AAAGTACGTCCATCTTCTAATTGTTTGCCAGCAAAAATGAGTCTTTGTTGATCGGGAGGA 11617 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTG-TTTTAATTGTTCCACGGTGTCGGTCGACTCCAC 138566 | |||||| | || ||| | |||| ||| | || ||| | |||||| || | || Sbjct 11618 AATCCTTCTATATC-TTGAATCTTTGCTTTCACTTTTTCAATGGTGTCACCTGATGCAAC 11676 Query 138567 CTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAAT 138608 ||||| || | ||||||||| ||| |||||| ||||| || Sbjct 11677 CTCGAGTGTAATCGTTTTACCTTTCAAAGTTTTCACAAATAT 11718 >seq4061 Length=86116 Score = 82.4 bits (90), Expect = 8e-11 Identities = 153/222 (69%), Gaps = 2/222 (1%) Strand=Plus/Plus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || |||| || || ||| | ||||| | | || ||||||||||| || || || | Sbjct 51702 CCACCTCTTAATCGTAAACCCAAATGGAGTGTAGATTCCTTTTGAATATTATAATCAGAC 51761 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | |||||| || || | |||||| || | | | || || | ||||| || ||||| Sbjct 51762 AAAGTACGTCCATCTTCTAATTGTTTGCCAGCAAAAATGAGTCTTTGTTGATCGGGAGGA 51821 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTG-TTTTAATTGTTCCACGGTGTCGGTCGACTCCAC 138566 | |||||||| || ||| | |||| ||| | | ||| | |||||| || | || Sbjct 51822 AATCCTTCTTTATC-TTGAATCTTTGCTTTCACCTTTTCAATGGTGTCACCTGATGCAAC 51880 Query 138567 CTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAAT 138608 ||||| || | ||||||||| ||| |||||| ||||| || Sbjct 51881 CTCGAGTGTAATCGTTTTACCGTTCAAAGTTTTCACAAATAT 51922 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496183109675040