Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schmidtea_20mediterranea_20[genbank_20GCA_5F000691995.1_202014-05- 30] 12,782 sequences; 700,725,851 total letters Query= NC_011616.1 Length=148634 Score E Sequences producing significant alignments: (Bits) Value seq9680 111 1e-19 seq62 104 2e-17 seq12383 86.0 6e-12 seq4061 86.0 6e-12 seq729 86.0 6e-12 seq7787 84.2 2e-11 >seq9680 Length=90248 Score = 111 bits (122), Expect = 1e-19 Identities = 152/210 (72%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 126905 ACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCT 126964 |||||||| | ||| |||||||| || ||||| || || || ||| ||| ||| Sbjct 41735 ACCAAATGGAGAGTACTTTCTTTTTGGATGTTGTAGTCAGACAATGTTCGACCATCTTCT 41794 Query 126965 AGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTG 127024 | |||||||||||| |||| | || ||| ||||| || || ||||| ||||||| | || Sbjct 41795 AATTGTTTTCCAGCGAAGATTAGTCTCTGTTGATCTGGTGGAATGCCTTCCTTGT-CTTG 41853 Query 127025 ATTTTCTGC-TTGAGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTT 127083 | ||| || || | | ||| | ||| || | | ||| ||||| | || | ||||| Sbjct 41854 AATTTTGGCTTTAACATTTTCAATGGTATCTGAAGACTCAACTTCAAGTGTAATTGTTTT 41913 Query 127084 GCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 || || || ||||| |||||||||||||| Sbjct 41914 ACCCGTTAGGGTTTTAACAAAAATCTGCAT 41943 >seq62 Length=83120 Score = 104 bits (114), Expect = 2e-17 Identities = 162/229 (71%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 ||||| || | ||| | || | ||||| || || ||||| |||||||||||||| Sbjct 2399 CCACCACGAAGTCGAAGTACTAGATGTAATGTGGATTCTTTCTGAATATTGTAATCAGAT 2340 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | || || || |||| |||||||| || | |||||||| |||||||| ||||| Sbjct 2339 AAAGTTCGTCCGTCTTCTAATTGTTTTCCGGCAAAAATCAATCGTTGCTGATCAGGAGGA 2280 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGC-TTGAGTTGTTCGACGGTGTCCGTACTCTCGAC 127065 ||||| || |||| | ||| ||| || || | | ||| | || || | | || || Sbjct 2279 ATGCCTTCTTTGT-CTTGAATTTTGGCTTTTACATTTTCAATTGTATCGGAAGATTCAAC 2221 Query 127066 TTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 127114 ||| | ||| | ||||| || || ||||| || |||||||| |||||| Sbjct 2220 TTCAAGGGTTATTGTTTTACCCGTAAGAGTCTTCACAAAAATTTGCATG 2172 >seq12383 Length=19971 Score = 86.0 bits (94), Expect = 6e-12 Identities = 156/223 (70%), Gaps = 4/223 (2%) Strand=Plus/Plus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 ||||| | |||||| || ||||||| | ||||| || ||||||||||| ||||| | Sbjct 8163 CCACCTCTTAATCGTAAACCCAAATGGAGTGTAGATTCCTTTTGAATATTATAATCAGAC 8222 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | || || ||| |||| ||||| ||||| | || | || || ||||||||||| Sbjct 8223 AAAGTACGTCCATCTTCTAATTGTTTGCCAGCAAAAATGAGTCTTTGTTGATCGGGAGGA 8282 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGC-TTGAGTTGTTCGACGGTGTC-CGTACTCTCGA 127064 | || || || | | ||| | | ||| || | | ||| | |||||| | | | | | Sbjct 8283 AATCCTTCTTTAT-CTTGAATCTTTGCTTTCACCTTTTCAATGGTGTCACCTGAT-GCAA 8340 Query 127065 CTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAAT 127107 | |||| || | |||||| ||| ||| |||||| ||||| || Sbjct 8341 CCTCGAGTGTAATCGTTTTACCGTTCAAAGTTTTCACAAATAT 8383 >seq4061 Length=86116 Score = 86.0 bits (94), Expect = 6e-12 Identities = 156/223 (70%), Gaps = 4/223 (2%) Strand=Plus/Plus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 ||||| | |||||| || ||||||| | ||||| || ||||||||||| ||||| | Sbjct 51702 CCACCTCTTAATCGTAAACCCAAATGGAGTGTAGATTCCTTTTGAATATTATAATCAGAC 51761 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | || || ||| |||| ||||| ||||| | || | || || ||||||||||| Sbjct 51762 AAAGTACGTCCATCTTCTAATTGTTTGCCAGCAAAAATGAGTCTTTGTTGATCGGGAGGA 51821 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGC-TTGAGTTGTTCGACGGTGTC-CGTACTCTCGA 127064 | || || || | | ||| | | ||| || | | ||| | |||||| | | | | | Sbjct 51822 AATCCTTCTTTAT-CTTGAATCTTTGCTTTCACCTTTTCAATGGTGTCACCTGAT-GCAA 51879 Query 127065 CTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAAT 127107 | |||| || | |||||| ||| ||| |||||| ||||| || Sbjct 51880 CCTCGAGTGTAATCGTTTTACCGTTCAAAGTTTTCACAAATAT 51922 >seq729 Length=267906 Score = 86.0 bits (94), Expect = 6e-12 Identities = 153/218 (70%), Gaps = 4/218 (2%) Strand=Plus/Minus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 ||||| | |||||| || |||||||| | ||||| || ||||||||||| ||||| | Sbjct 157332 CCACCTCTTAATCGTAAAACCAAATGGAGTGTAGATTCCTTTTGAATATTATAATCAGAC 157273 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | ||| | ||| |||| ||||| ||||| | || | || || ||||||||||| Sbjct 157272 AAGGTGTGTCCATCTTCTAATTGTTTGCCAGCAAAAATGAGTCTTTGTTGATCGGGAGG- 157214 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGC-TTGAGTTGTTCGACGGTGTC-CGTACTCTCGA 127064 | ||| ||| | ||| | | || || | | ||| | |||||| | || | | | Sbjct 157213 AAATCCTTTTTGATCTTGAATCTTAGCTTTCACCTTTTCAATGGTGTCACCTAAT-GCAA 157155 Query 127065 CTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACA 127102 | |||| || | |||||| ||||||| |||||| ||| Sbjct 157154 CCTCGAGTGTAATCGTTTTACCGGTCAAAGTTTTCACA 157117 >seq7787 Length=20266 Score = 84.2 bits (92), Expect = 2e-11 Identities = 156/224 (70%), Gaps = 4/224 (2%) Strand=Plus/Plus Query 126886 TCCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCC 126945 |||||| | |||||| || ||||||| | ||||| || ||||||||||| ||||| Sbjct 11497 TCCACCTCTTAATCGTAAACCCAAATGGAGTGTAGATTCCTTTTGAATATTATAATCAGA 11556 Query 126946 CATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGG 127005 || || || ||| |||| ||||| ||||| | || | || || ||||||||||| Sbjct 11557 CAAAGTACGTCCATCTTCTAATTGTTTGCCAGCAAAAATGAGTCTTTGTTGATCGGGAGG 11616 Query 127006 TATGCCCTCCTTGTCCGTGATTTTCTGC-TTGAGTTGTTCGACGGTGTC-CGTACTCTCG 127063 | || || | | | ||| | | ||| || | || ||| | |||||| | | | | Sbjct 11617 AAATCCTTCTATAT-CTTGAATCTTTGCTTTCACTTTTTCAATGGTGTCACCTGAT-GCA 11674 Query 127064 ACTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAAT 127107 || |||| || | |||||| || ||| |||||| ||||| || Sbjct 11675 ACCTCGAGTGTAATCGTTTTACCTTTCAAAGTTTTCACAAATAT 11718 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 475424826859680