Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schmidtea_20mediterranea_20[genbank_20GCA_5F000691995.1_202014-05- 30] 12,782 sequences; 700,725,851 total letters Query= NC_013288.1 Length=191761 Score E Sequences producing significant alignments: (Bits) Value seq4842 111 2e-19 seq4321 86.0 8e-12 >seq4842 Length=204163 Score = 111 bits (122), Expect = 2e-19 Identities = 283/426 (66%), Gaps = 6/426 (1%) Strand=Plus/Plus Query 12644 GTGGACACCCAAAATCTTCTCGCGTCCGCGCACACTGGGTAGGGACACGGTGATCTTAC- 12702 ||| ||| |||||| | |||||||| || | | ||||||| ||| | | ||| | Sbjct 30223 GTGAACATTCAAAATTTGTTCGCGTCCACGAATATCAGGTAGGGTGACG-TAAACTTGCC 30281 Query 12703 GATCAAAGCGACCTGGGCGGAGGAGGGCGTCGTCAAGGATATCAATGCGGTTCGTCGCCG 12762 | ||||| || || || || || | || | ||| | |||||| ||| || || || | Sbjct 30282 GGTCAAAACGCCCCGGACGAAGCAACGCTTGGTCCAAAATATCAGGGCGATTGGTTGCGG 30341 Query 12763 CGATGACAACGATGCCCGTCTCGTTATCGAAGCCATCCATCTCAGTCAAGAGTTGATTGA 12822 | | ||| | | | | | | | || ||||||||||| ||| ||| | |||||| | Sbjct 30342 CCACGACGATCACACTGGCGTTGGTTTCAAAGCCATCCATTTCAACCAACATTTGATTCA 30401 Query 12823 TGGTTTGTTCACGTTCATCATTCGCGGGCATACCA--CCCGCACTGCGTTGCTTACCGAC 12880 ||||||||| || |||||||| | | ||| || || | ||| || ||| || Sbjct 30402 GGGTTTGTTCGCGCTCATCATTACC--ACCGCCCAGGCCGGCTCCGCGCTGGCGACCCAC 30459 Query 12881 GGCGTCAATTTCGTCAATGAAAACGATACACGGTTGATTTTCACGGGCAACTTCAAAGAT 12940 ||||||||||| |||||||||| || || ||| ||| | ||| ||||| || Sbjct 30460 CGCGTCAATTTCATCAATGAAAATAATGCAAGGTGCATTCTTTTTGGCGTTATCAAACAT 30519 Query 12941 ATCTCGCACTCTCTTGGCACCGACACCCACAAACATCTCCACAAAATTGGCGGCGGAACA 13000 ||| ||||| | || || |||||||| ||||| || || |||| | | ||| Sbjct 30520 ATCACGCACCCGAGACGCGCCTACACCCACGAACATTTCAACGAAATCAGAACCAGAAAT 30579 Query 13001 TTGGATGAAGGGGACGTTGGATTCACCCGCGATGGCTCGGGCGAGGAGGGTCTTCCCCGT 13060 || || || || |||| ||| ||||| || | | || || || || || ||||| Sbjct 30580 GCTGAAAAAAGGAACCTTGGCTTCGCCCGCAATCGATTTAGCAAGCAGTGTTTTACCCGT 30639 Query 13061 CCCTGG 13066 || || Sbjct 30640 TCCAGG 30645 >seq4321 Length=90450 Score = 86.0 bits (94), Expect = 8e-12 Identities = 137/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 116416 ACATACTTAGGAAGGGCGATTGACGCCAGATTACACACAGAGGTCTCATCCTTATCAGTG 116475 ||| | || ||||| | ||| || |||| ||| || |||| | ||||| | | | Sbjct 81339 ACAAATTTTGGAAGAGAGATCGAAGCCAAATTGCAAACAGCTATTTCATCAGGAGAACTA 81398 Query 116476 TACTCTATAATTTCCGTACACAAATTTGAACTCTTAATGGTGCCCAAGTTCTTTTGATTT 116535 || |||| |||||| || |||||||| | || || || || || | || |||||| Sbjct 81399 TATTCTACAATTTCTGTGCACAAATTGCTGCATTTGATCGTTCCTAAATGCTGATGATTT 81458 Query 116536 GACTTTGTGTTACACGCATCCTTGTAGAGCATATATGGCGTCCCCGTCTCCGTTTGGGAC 116595 ||||| | || || || |||||||| |||||||| || || || || || |||| || Sbjct 81459 GACTTGGCATTGCAGGCGTCCTTGTATAGCATATAAGGAGTTCCGGTTTCGATTTGTGAA 81518 Query 116596 TTGAGAATAGCCTTCCA 116612 | ||| || | ||||| Sbjct 81519 TCGAGGATTTCTTTCCA 81535 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 613409176887120