Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schmidtea_20mediterranea_20[genbank_20GCA_5F000691995.1_202014-05- 30] 12,782 sequences; 700,725,851 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq2828 131 2e-25 seq9680 87.8 2e-12 >seq2828 Length=37213 Score = 131 bits (144), Expect = 2e-25 Identities = 343/530 (65%), Gaps = 45/530 (8%) Strand=Plus/Plus Query 132874 ACCAAATGCTTGAACATCAAGCAAGCAAAGTCGCAATGCAAGCCCTCGTCCCTGGAAATG 132933 || |||| || |||||||| |||||||| |||||||| | || || || | | ||| Sbjct 28690 ACTAAATATTTAAACATCAAACAAGCAAAATCGCAATGAAGTCCTTCATCTCGGCTAATT 28749 Query 132934 AGTTCGTTGCTGAAAGTCAAGCCGGGCATGAGGCCGCGTTTTTTGAGCCAAAATATGGCG 132993 | ||||||||||||| || |||||||| | || || ||||| ||||||||||| | Sbjct 28750 AATTCGTTGCTGAAACATAATCCGGGCATTAATCCACGCTTTTTAAGCCAAAATATCGAT 28809 Query 132994 GCGAAACTGCCCGAAAAGAAGACGCCCTCGACGGCCGCGAAAGCCACCAGGCGCTCG--C 133051 || ||||| || || || | |||||||| || || || || || | | || | | Sbjct 28810 GCAAAACTACCACTGAAAAATATTCCCTCGACAGCAGCAAATGCAACAA--CTCTAGTTC 28867 Query 133052 CGAACGTGGCTTCTTTGCTGGCGATCCAGCGCAGCGCCCATTCGGCCTTTTCTTTGACGC 133111 | || |||| || ||| | ||||| |||| ||||||| || |||| | |||| Sbjct 28868 CAAAAGTGGATTTTTTATCGCTAATCCAACGCAATGCCCATTGAGCTTTTTTCTGAACGC 28927 Query 133112 ACGGCATCGTTTCGATGGCGTTCAACAAACG------------GAG-----TTTCTCTTC 133154 | ||||| ||||||||||| || || || ||| ||| | | Sbjct 28928 ATGGCATAGTTTCGATGGCATTAAATAATTTATTCCTTTTTTCGAGATAATTTTTTATGA 28987 Query 133155 CGAGGAACGC------------------------ACGTAGGTGTCGATGAGGGTCGAATA 133190 | | ||| | || || | ||||| | ||||| Sbjct 28988 CAAAGAAAACTATTACTTTGTTTCTGTATCAGTAACATAAGAATCGATTAATAGAGAATA 29047 Query 133191 CATTTCCGAGTGTACGTTCTCCATGGCGATTTGAAAGCCGTAAAAGCACCGCGCCTCGAC 133250 |||||| || || | ||| || || || |||||||| | |||||| | || ||| Sbjct 29048 CATTTCTGAATGAATGTTTTCAATTGCAATTTGAAAACTGTAAAATGCCTCAGCTTCGGG 29107 Query 133251 CACCTGCACTTCTTGAGCGAAACGCTCGACCAGATTTTCGTTGACGATGCCGTCGCTGGC 133310 | | |||||||||| ||| | ||||| |||||||| ||||| || || || ||||| Sbjct 29108 AATTTTCACTTCTTGAATGAATCTTTCGACGAGATTTTCATTGACAATTCCATCACTGGC 29167 Query 133311 GGCGAAAAAGGCCAGCACGTGCTTGATGAAATGGCGCTCGTTGTCGTTCA 133360 || ||||| || || ||||| | ||||||| || || | ||| |||| Sbjct 29168 AGCAAAAAATGCAAGAACGTGAGTAATGAAATACCGTTCATCGTCATTCA 29217 Score = 100 bits (110), Expect = 3e-16 Identities = 127/175 (73%), Gaps = 0/175 (0%) Strand=Plus/Plus Query 133186 GAATACATTTCCGAGTGTACGTTCTCCATGGCGATTTGAAAGCCGTAAAAGCACCGCGCC 133245 ||||||||||| || || | ||| || || || |||||||| | |||||| | || Sbjct 31123 GAATACATTTCTGAATGAATGTTTTCAATTGCAATTTGAAAACTGTAAAATGCCTCAGCT 31182 Query 133246 TCGACCACCTGCACTTCTTGAGCGAAACGCTCGACCAGATTTTCGTTGACGATGCCGTCG 133305 ||| | | |||||||||| ||| | ||||| |||||||| ||||| || || || Sbjct 31183 TCGGGAATTTTCACTTCTTGAATGAATCTTTCGACGAGATTTTCATTGACAATTCCATCA 31242 Query 133306 CTGGCGGCGAAAAAGGCCAGCACGTGCTTGATGAAATGGCGCTCGTTGTCGTTCA 133360 ||||| || ||||| || || ||||| | ||||||| || || | ||| |||| Sbjct 31243 CTGGCAGCAAAAAATGCAAGAACGTGAGTAATGAAATACCGTTCATCGTCATTCA 31297 >seq9680 Length=90248 Score = 87.8 bits (96), Expect = 2e-12 Identities = 147/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 38243 AATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCAC 38302 |||||| || || || ||||| || ||||| ||||| || || | || || ||| | | Sbjct 41944 AATGCAGATTTTTGTTAAAACCCTAACGGGTAAAACAATTACACTTGAAGTTGAGTCTTC 41885 Query 38303 CGACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 || | | | ||| |||||| ||||| | ||||| || || ||||| | || || Sbjct 41884 AGATACCATTGAAAATGTTAAAGCCAAAATTCAAGACAAGGAAGGCATTCCACCAGATCA 41825 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 |||| | || || | ||| || ||||| | || || | || || | |||||||| Sbjct 41824 ACAGAGACTAATCTTCGCTGGAAAACAATTAGAAGATGGTCGAACATTGTCTGACTACAA 41765 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCT 38455 ||||||||| ||| || || |||||||| || Sbjct 41764 CATCCAAAAAGAAAGTACTCTCCATTTGGTACT 41732 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 500092884890880