Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schmidtea_20mediterranea_20[genbank_20GCA_5F000691995.1_202014-05- 30] 12,782 sequences; 700,725,851 total letters Query= NC_014789.1 Length=184409 Score E Sequences producing significant alignments: (Bits) Value seq4842 107 2e-18 seq4321 102 1e-16 seq2828 87.8 2e-12 >seq4842 Length=204163 Score = 107 bits (118), Expect = 2e-18 Identities = 280/425 (66%), Gaps = 4/425 (1%) Strand=Plus/Plus Query 9134 GTGAACACCCAAGATCTTCTCGCGTCCCCGAACACTTGGGAGAGCTACTTGGATCTTACG 9193 ||||||| ||| || | |||||||| |||| | || || | || | | | || Sbjct 30223 GTGAACATTCAAAATTTGTTCGCGTCCACGAATATCAGGTAGGGTGACGTAAACTTGCCG 30282 Query 9194 ATCAAAGCGACCTGGACGAAGGAGCGCGTCATCAAGGATATCAACGCGATTCGTCGCGGC 9253 ||||| || || |||||||| | ||| | || | |||||| |||||| || ||||| Sbjct 30283 GTCAAAACGCCCCGGACGAAGCAACGCTTGGTCCAAAATATCAGGGCGATTGGTTGCGGC 30342 Query 9254 GATGACAACAATACCTGTTTCATTATCAAAACCATCCATCTCTGTCAAAAGTTGGTTAAT 9313 | ||| | | || | | | ||||| |||||||| || ||| | ||| || | Sbjct 30343 CACGACGATCACACTGGCGTTGGTTTCAAAGCCATCCATTTCAACCAACATTTGATTCAG 30402 Query 9314 AGTTTGTTCCCGTTCATCATTCGCTGGCATACCA--CCAGCACTGCGTTGCTTTCCCACG 9371 |||||||| || |||||||| | | ||| || || | ||| || ||||| Sbjct 30403 GGTTTGTTCGCGCTCATCATTACCA--CCGCCCAGGCCGGCTCCGCGCTGGCGACCCACC 30460 Query 9372 GCATCAATCTCATCAATGAAGACAATACATGGTTGATTTTCGCGGGCGATTTCAAAGAGA 9431 || ||||| ||||||||||| | ||| || ||| ||| | |||| | ||||| | | Sbjct 30461 GCGTCAATTTCATCAATGAAAATAATGCAAGGTGCATTCTTTTTGGCGTTATCAAACATA 30520 Query 9432 TCGCGAACCCTTTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTGCGGCGGAACAT 9491 || || |||| ||||| ||||| || ||||| || || || | | | ||| Sbjct 30521 TCACGCACCCGAGACGCGCCTACACCCACGAACATTTCAACGAAATCAGAACCAGAAATG 30580 Query 9492 TGGATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGTCTTACCCGTA 9551 || || || || || | ||| |||||||| | | || || || || |||||||| Sbjct 30581 CTGAAAAAAGGAACCTTGGCTTCGCCCGCAATCGATTTAGCAAGCAGTGTTTTACCCGTT 30640 Query 9552 CCTGG 9556 || || Sbjct 30641 CCAGG 30645 >seq4321 Length=90450 Score = 102 bits (112), Expect = 1e-16 Identities = 142/199 (71%), Gaps = 0/199 (0%) Strand=Plus/Plus Query 106448 ACATACTTTGGAAGGGCGATTGATGCCAAATTGCAAACAGCCGTCTCATCCTTATCTGTG 106507 ||| | |||||||| | ||| || ||||||||||||||||| | ||||| | | Sbjct 81339 ACAAATTTTGGAAGAGAGATCGAAGCCAAATTGCAAACAGCTATTTCATCAGGAGAACTA 81398 Query 106508 TACTCTAAAATTTCTGTACACAAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGGTTA 106567 || |||| ||||||||| ||||| ||| | || ||||| || |||| || || || Sbjct 81399 TATTCTACAATTTCTGTGCACAAATTGCTGCATTTGATCGTTCCTAAATGCTGATGATTT 81458 Query 106568 CTCTTTTTGTTGCACGCATCCTTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTGTGAC 106627 ||| ||||| || |||||||| ||||| || || || || || || | ||||| Sbjct 81459 GACTTGGCATTGCAGGCGTCCTTGTATAGCATATAAGGAGTTCCGGTTTCGATTTGTGAA 81518 Query 106628 TTGAGAATTGCCTTCCACA 106646 | ||| ||| | ||||||| Sbjct 81519 TCGAGGATTTCTTTCCACA 81537 >seq2828 Length=37213 Score = 87.8 bits (96), Expect = 2e-12 Identities = 124/172 (72%), Gaps = 2/172 (1%) Strand=Plus/Plus Query 116985 ATAGTCCCCAACTCGCTTCTCAAAGAAGTTGGTCTTCCCATCAAGGCTAATGTTTTCCAT 117044 ||| || || ||||| |||||||||||||| || |||||||| | || ||| || ||||| Sbjct 28376 ATATTCACCGACTCGTTTCTCAAAGAAGTTAGTTTTCCCATCGATGCAAATATTATCCAT 28435 Query 117045 AAAGTCAAATGGATTCTTCGCGTTCCA-AATGGGTGGCACCCCAACTTGTTTGAGGAGAC 117103 || || || || |||| | |||||| || || || ||||| || || || | Sbjct 28436 GAAATCCAACGGGTTCTCTGTGTTCCAGAACTTGTCACAGCCCAA-TTCAACCAGCAGCC 28494 Query 117104 GATCCGACACATACTCAATGTACTCGGACATCTTCTCAGAGTTCATACCGAT 117155 | || | |||| | ||||| ||||| ||||| |||| |||||| || || Sbjct 28495 GGTCGGCCACAAATTCAATATACTCACACATCGATTCAGCGTTCATGCCAAT 28546 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 589886535817680