Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schmidtea_20mediterranea_20[genbank_20GCA_5F000691995.1_202014-05- 30] 12,782 sequences; 700,725,851 total letters Query= NC_015284.1 Length=183806 Score E Sequences producing significant alignments: (Bits) Value seq7769 105 8e-18 seq2587 84.2 3e-11 >seq7769 Length=98353 Score = 105 bits (116), Expect = 8e-18 Identities = 109/143 (76%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 158560 GGTAATAAAGCATACAGATTAGCACTACAGACTAGAGAGCAGCATATCAGAAGAGACAAA 158619 ||||| ||||||| || | || |||| || ||||| ||||||||||||||||| ||| Sbjct 39570 GGTAACCCAGCATACCGACTTGCCTTACAAACGAGAGAACAGCATATCAGAAGAGATAAA 39511 Query 158620 GCAACCAGTAACATCTGCACAGCACAAGCACTGCTGGCTAATATGTCTGGGTTCTATGCA 158679 || || ||||| || || || || |||||||| | || |||||||||| | ||||| Sbjct 39510 GCGACAAGTAATATTTGTACTGCTCAAGCACTTTTAGCAAATATGTCTGCAATGTATGCT 39451 Query 158680 GCATATCATGGTGCAGATGGACT 158702 | ||||||||| | || || || Sbjct 39450 GTTTATCATGGTCCCGAAGGCCT 39428 Score = 105 bits (116), Expect = 8e-18 Identities = 109/143 (76%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 158560 GGTAATAAAGCATACAGATTAGCACTACAGACTAGAGAGCAGCATATCAGAAGAGACAAA 158619 ||||| ||||||| || | || |||| || ||||| ||||||||||||||||| ||| Sbjct 41377 GGTAACCCAGCATACCGACTTGCCTTACAAACGAGAGAACAGCATATCAGAAGAGATAAA 41318 Query 158620 GCAACCAGTAACATCTGCACAGCACAAGCACTGCTGGCTAATATGTCTGGGTTCTATGCA 158679 || || ||||| || || || || |||||||| | || |||||||||| | ||||| Sbjct 41317 GCGACAAGTAATATTTGTACTGCTCAAGCACTTTTAGCAAATATGTCTGCAATGTATGCT 41258 Query 158680 GCATATCATGGTGCAGATGGACT 158702 | ||||||||| | || || || Sbjct 41257 GTTTATCATGGTCCCGAAGGCCT 41235 Score = 105 bits (116), Expect = 8e-18 Identities = 109/143 (76%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 158560 GGTAATAAAGCATACAGATTAGCACTACAGACTAGAGAGCAGCATATCAGAAGAGACAAA 158619 ||||| ||||||| || | || |||| || ||||| ||||||||||||||||| ||| Sbjct 43887 GGTAACCCAGCATACCGACTTGCCTTACAAACGAGAGAACAGCATATCAGAAGAGATAAA 43828 Query 158620 GCAACCAGTAACATCTGCACAGCACAAGCACTGCTGGCTAATATGTCTGGGTTCTATGCA 158679 || || ||||| || || || || |||||||| | || |||||||||| | ||||| Sbjct 43827 GCGACAAGTAATATTTGTACTGCTCAAGCACTTTTAGCAAATATGTCTGCAATGTATGCT 43768 Query 158680 GCATATCATGGTGCAGATGGACT 158702 | ||||||||| | || || || Sbjct 43767 GTTTATCATGGTCCCGAAGGCCT 43745 >seq2587 Length=234350 Score = 84.2 bits (92), Expect = 3e-11 Identities = 105/144 (73%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 157881 TATAGGTCAAGGATACTATGGAACCATCACACCCCCAGTCATACAGCGAAACGTTCTTGA 157940 ||| || ||||| || || || ||| || ||| | || || ||| || || ||||| Sbjct 90197 TATTGGCCAAGGTTATTACGGTACCTACATACCGTCGGTGATTTTGCGCAATGTGCTTGA 90256 Query 157941 GAATCCTAGTTGGTACACATCTTACACTCCCTATCAAGCTGAGATATCTCAGGGAAGATT 158000 |||||| |||||| || | ||||| || || |||||||| || || || || ||||| Sbjct 90257 AAATCCTGCTTGGTATACGGCGTACACCCCGTACCAAGCTGAAATTTCACAAGGCAGATT 90316 Query 158001 GGAAGCTTTATTCAATTACCAAAC 158024 |||||| | || |||| |||||| Sbjct 90317 GGAAGCACTTTTGAATTTCCAAAC 90340 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 587957244119520