Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schmidtea_20mediterranea_20[genbank_20GCA_5F000691995.1_202014-05- 30] 12,782 sequences; 700,725,851 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq4321 273 2e-68 seq2828 214 2e-50 seq2867 89.7 6e-13 >seq4321 Length=90450 Score = 273 bits (302), Expect = 2e-68 Identities = 554/803 (69%), Gaps = 42/803 (5%) Strand=Plus/Plus Query 47883 ATAGATGCTAGATTACATACAGCTACCTCATTTGGATTAGTATATTGTATTATTTCAGCA 47942 || || || | ||| || ||||||| |||| ||| | |||||| || ||||| | Sbjct 81357 ATCGAAGCCAAATTGCAAACAGCTATTTCATCAGGAGAACTATATTCTACAATTTCTGTG 81416 Query 47943 CATAGATTACCACATTTGATAGTACCCAAATTTTGATGATTATTNNNNTTG--TTACATG 48000 || | ||| | |||||||| || || |||| |||||||| | | | || || | Sbjct 81417 CACAAATTGCTGCATTTGATCGTTCCTAAATGCTGATGATT--TGACTTGGCATTGCAGG 81474 Query 48001 CGTCCTTGTAAAGCATAAAAGGTGTTCCAGTTTCTATCTGAGATTCAATGATAGATTTCC 48060 |||||||||| |||||| |||| ||||| ||||| || || || || | ||| ||||| Sbjct 81475 CGTCCTTGTATAGCATATAAGGAGTTCCGGTTTCGATTTGTGAATCGAGGATTTCTTTCC 81534 Query 48061 AAACAGTCCTAGCCTTTATAACAGCTCTAGCTTTATTATCA--TGTTCGT-ATTTAGT-- 48115 | | | | ||||| || || | | || ||| ||| | ||| | || || | Sbjct 81535 ACAAAATTCTAGCTTTAATC---GTTTTA--TTTCCCATCCCCTTTTCTTCATATAATTC 81589 Query 48116 ATATAACTTCTCAAA--TTCATCCCCATACACATT-ATCTAACCCAGGACATTCATTAGG 48172 ||| | || ||||| || |||||| |||| || | |||| ||||| || ||| Sbjct 81590 ATAGAGTTTGTCAAACTTTTCTCCCCAG---CATTCATGAAGTCCAGCACATTTATGAGG 81646 Query 48173 ACACATCAATGACCAATCCTCATCATTTTTTACTCTAGTCATAAATATATCTGGTATCCA 48232 |||||||| ||||| | ||||| ||| |||| |||| |||| |||||| ||||| Sbjct 81647 GTCCATCAATGTCCAATTCCCATCACTTTGAACTCGTTTCATGAATAAATCTGGAATCCA 81706 Query 48233 AAGAGCTATAAATAAATCCCTAGTTCTTAGTTC--TTCATTGCCACTATTCCTTTTAAG- 48289 | ||| ||||||||| |||| | || ||| ||||| || || |||| | Sbjct 81707 CAAAGCGCAAAATAAATCTCTAGCTTTT--TTCGATTCATCTCCGTGGTT---TTTACGC 81761 Query 48290 --TTCAAGAAAGTCCATTATATCAGCATGCCATGGTTCTAAATATATTGCCATTACACCT 48347 ||| | ||| |||| ||| |||| ||||||||| || | ||| || || | | |||| Sbjct 81762 AATTCCAAAAATTCCAATATGTCAGAATGCCATGGCTCAATATAAATGGCGAATGCACCG 81821 Query 48348 GGTCGTTTATTACCTCCTTGATCTATATATCTGGCAGTATTGTTATAAACTCTTAACATT 48407 ||||| ||||| || ||||| || | || | || | || ||| | || | |||| Sbjct 81822 GGTCGCTTATTTCCACCTTGGTCGACGTAACGAGCTGCATAATTAAATACCTGGAGCATT 81881 Query 48408 GG-GACAATACCATTTGATATACCATTGGTTCCCGAAATATAACTTCCACTAGCTCTTAT 48466 || | ||| ||||| |||| |||||| ||||| || |||| | ||||| || Sbjct 81882 GGAGTTAAT-CCATTCGATACACCATTTGTTCCATTGATTGGTGATCCAGTCGCTCTAAT 81940 Query 48467 ATTACTAA--TTGAAATACCTATACCACCTGCCATTTTAGATATTAGAGCACACCGTTTA 48524 | | || || ||| || |||||||| || |||||| || |||||||| |||| Sbjct 81941 ACAATGAACATTTAAA--CCGATACCACCAGCATATTTAGAAATAAGAGCACATTCTTTA 81998 Query 48525 AGGGTATCATAAATTCCTTCTATACTATCATCTATCATATTTAATAGAAAACAACTAGAC 48584 || ||| | | ||||| || ||||| |||||| |||| ||||||| ||||||||||| Sbjct 81999 AGAGTACTAAATATTCCATCAATACTGTCATCTTTCATTGTTAATAGGAAACAACTAGAG 82058 Query 48585 ATTTGCGGATGAC---AAGTTCCTGAATTAAATAATGTTGGAGATGCATGAATAAACCAT 48641 | ||| || || || || | |||||||||||||||||| || || ||||||||| Sbjct 82059 AGTTGACCAT-ACTTTAA--CCCAGCATTAAATAATGTTGGAGAAGCGTGTATAAACCAT 82115 Query 48642 TTCTCTGATAACAATTTATATGT 48664 |||||||| | || ||||| || Sbjct 82116 TTCTCTGACATTAAATTATAAGT 82138 >seq2828 Length=37213 Score = 214 bits (236), Expect = 2e-50 Identities = 444/666 (67%), Gaps = 44/666 (7%) Strand=Plus/Plus Query 18945 ATGTTTAAACATCAAACATGCAAAATCACAATGTAGTCCCTCGTCTCTACTTATCAATTC 19004 || ||||||||||||||| |||||||| ||||| ||||| || |||| || || ||||| Sbjct 28695 ATATTTAAACATCAAACAAGCAAAATCGCAATGAAGTCCTTCATCTCGGCTAATTAATTC 28754 Query 19005 ATTAGAAAATGTTAAACCAGGCATCAGTCCTCttttttttAACCAGAATATAGAAGCAAA 19064 || || ||| || ||||| | ||| | ||||| | ||| ||||| || ||||| Sbjct 28755 GTTGCTGAAACATAATCCGGGCATTAATCCACGCTTTTTAAGCCAAAATATCGATGCAAA 28814 Query 19065 TGATCCAGAAAAGAATATACCTTCTACTGCTGCAAAAGCAACTAGTCTTTCTCCATAACT 19124 ||| || ||||| || || || || ||||| ||||| | ||| |||| || | Sbjct 28815 ACTACCACTGAAAAATATTCCCTCGACAGCAGCAAATGCAACAACTCTAGTTCCAAAAGT 28874 Query 19125 AGCATCATTATTATGAATCCATTTCAGTGCCCAATCAGCCTTCTTTTTTACACATGGCAT 19184 | | |||| |||||| || |||||| | ||| || || | || |||||||| Sbjct 28875 GGATTTTTTATCGCTAATCCAACGCAATGCCCATTGAGCTTTTTTCTGAACGCATGGCAT 28934 Query 19185 TGTCTCTATAGAATTAAATA------------------GATACAT--------------- 19211 || || || | |||||||| |||| | Sbjct 28935 AGTTTCGATGGCATTAAATAATTTATTCCTTTTTTCGAGATAATTTTTTATGACAAAGAA 28994 Query 19212 -ACGCTCA-------TCTGTATCTTTAACATATGCATCTATCAATAAACTGTACATTTCT 19263 || | | |||||||| ||||||| | ||| || |||| | ||||||||| Sbjct 28995 AACTATTACTTTGTTTCTGTATCAGTAACATAAGAATCGATTAATAGAGAATACATTTCT 29054 Query 19264 GAATGAATATTTTCTATAGCCATCTGAAATCCGTAAAAA-CATCTTGCTTCTGTTATCTG 19322 |||||||| ||||| || || || ||||| | |||||| | || ||||| | || | Sbjct 29055 GAATGAATGTTTTCAATTGCAATTTGAAAACTGTAAAATGCCTCA-GCTTCGGGAATTTT 29113 Query 19323 TACTTCACTACAAAATCTTTCGACCAAATTTTCATTAACTATTCCATCACTAGCTGCAAA 19382 ||||| | ||||||||||| | ||||||||| || ||||||||||| || ||||| Sbjct 29114 CACTTCTTGAATGAATCTTTCGACGAGATTTTCATTGACAATTCCATCACTGGCAGCAAA 29173 Query 19383 AAATGCTAATACATGTTTAATAAAATGTTTTTCATCTGAGGTTAATGTATTCCAATCATT 19442 |||||| | || || |||| |||| |||||| | | | | ||||| | | Sbjct 29174 AAATGCAAGAACGTGAGTAATGAAATACCGTTCATCGTCATTCATTTTTTTCCAGTGAGC 29233 Query 19443 AATATCTTTAGATAAATCTACTTCTTCAACTGTCCAAAAAGAAGCCTCTGCTTTTTTATA 19502 || |||||| ||||||| ||||| | || |||||||| |||| ||||| ||| | Sbjct 29234 AAAATCTTTTGATAAATTAACTTCATTTACAGTCCAAAATGAAGATCGAGCTTTATTAAA 29293 Query 19503 CATGTTCCATATATCACGATATTGTATAGGAAATATAACAAATCTATTTTTATTTTCT-T 19561 ||| | ||||||||| |||||||||| || | | | || | |||||| |||| | Sbjct 29294 CATTTCCCATATATCTTCATATTGTATATTAAGAAATCCTATTCGACTTTTATCTTCTGT 29353 Query 19562 TAAGAA 19567 ||| || Sbjct 29354 TAATAA 29359 Score = 176 bits (194), Expect = 5e-39 Identities = 252/351 (72%), Gaps = 3/351 (1%) Strand=Plus/Plus Query 19219 TCTGTATCTTTAACATATGCATCTATCAATAAACTGTACATTTCTGAATGAATATTTTCT 19278 |||||||| ||||||| | ||| || |||| | ||||||||||||||||| ||||| Sbjct 31090 TCTGTATCAGTAACATAAGAATCGATTAATAGAGAATACATTTCTGAATGAATGTTTTCA 31149 Query 19279 ATAGCCATCTGAAATCCGTAAAAA-CATCTTGCTTCTGTTATCTGTACTTCACTACAAAA 19337 || || || ||||| | |||||| | || ||||| | || | ||||| | || Sbjct 31150 ATTGCAATTTGAAAACTGTAAAATGCCTCA-GCTTCGGGAATTTTCACTTCTTGAATGAA 31208 Query 19338 TCTTTCGACCAAATTTTCATTAACTATTCCATCACTAGCTGCAAAAAATGCTAATACATG 19397 ||||||||| | ||||||||| || ||||||||||| || ||||||||||| | || || Sbjct 31209 TCTTTCGACGAGATTTTCATTGACAATTCCATCACTGGCAGCAAAAAATGCAAGAACGTG 31268 Query 19398 TTTAATAAAATGTTTTTCATCTGAGGTTAATGTATTCCAATCATTAATATCTTTAGATAA 19457 |||| |||| |||||| | | | | ||||| | | || |||||| ||||| Sbjct 31269 AGTAATGAAATACCGTTCATCGTCATTCATTTTTTTCCAGTGAGCAAAATCTTTTGATAA 31328 Query 19458 ATCTACTTCTTCAACTGTCCAAAAAGAAGCCTCTGCTTTTTTATACATGTTCCATATATC 19517 || ||||| | || |||||||| |||| ||||| ||| |||| | ||||||||| Sbjct 31329 ATTAACTTCATTTACAGTCCAAAATGAAGATCGAGCTTTATTAAACATTTCCCATATATC 31388 Query 19518 ACGATATTGTATAGGAAATATAACAAATCTATTTTTATTTTCT-TTAAGAA 19567 |||||||||| || | | | || | |||||| |||| |||| || Sbjct 31389 TTCATATTGTATATTAAGAAATCCTATTCGACTTTTATCTTCTGTTAATAA 31439 >seq2867 Length=150518 Score = 89.7 bits (98), Expect = 6e-13 Identities = 183/268 (68%), Gaps = 8/268 (3%) Strand=Plus/Plus Query 19154 CCCAATCAGCCTTCTTTTTTACACATGGCATTGTCTCTATAGAATTAAATAGATACATAC 19213 |||| | ||||| || | || | |||||| || || || | |||||||| | ||| Sbjct 86868 CCCATTGTGCCTTTTTCTGAACTCGTGGCATAGTTTCGATGGCATTAAATAATT---TAC 86924 Query 19214 GCTCA---TCTGTATCTTTAACATATGCATCTATCAATAAACTGTACATTTCTGAATGAA 19270 || |||||||| ||||||| | ||| || |||| | |||||||||||||| Sbjct 86925 TCTTTGTTTCTGTATCAATAACATAAGAATCGATTAATAGCGAATGCATTTCTGAATGAA 86984 Query 19271 TATTTTCTATAGCCATCTGAAATCCGTAAAA-ACATCTTGCTTCTGTTATCTGTACTTCA 19329 | |||| || | || ||||| | |||||| | || ||||| | || | ||||| Sbjct 86985 TGCTTTCAATGGTAATTTGAAAACTGTAAAATGCCTC-AGCTTCAGGAATTTTGACTTCT 87043 Query 19330 CTACAAAATCTTTCGACCAAATTTTCATTAACTATTCCATCACTAGCTGCAAAAAATGCT 19389 | | ||||| ||||| | ||||||||| | || |||||||| || || |||| | Sbjct 87044 TGAAAGAATCTCTCGACAAGATTTTCATTGTCAATCCCATCACTGGCAGCGAAAAGGGTA 87103 Query 19390 AATACATGTTTAATAAAATGTTTTTCAT 19417 | || || |||| |||| | ||||| Sbjct 87104 AGGACGTGAGTAATGAAATATCATTCAT 87131 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 562018989066480