Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schmidtea_20mediterranea_20[genbank_20GCA_5F000691995.1_202014-05- 30] 12,782 sequences; 700,725,851 total letters Query= NC_016924.1 Length=185139 Score E Sequences producing significant alignments: (Bits) Value seq2828 181 1e-40 >seq2828 Length=37213 Score = 181 bits (200), Expect = 1e-40 Identities = 385/583 (66%), Gaps = 45/583 (8%) Strand=Plus/Plus Query 37157 TAAATATTTAAACAATAAACATGCAAAATCACAATGTAAACCTTCATCTCTACTTATCAA 37216 |||||||||||||| ||||| |||||||| ||||| | |||||||||| || || || Sbjct 28692 TAAATATTTAAACATCAAACAAGCAAAATCGCAATGAAGTCCTTCATCTCGGCTAATTAA 28751 Query 37217 TTCATTAGAAAAGGTTAATCCTGGCATTAAACCTCtttttttAATCCAAAATATTGCTGC 37276 ||| || || |||||| |||||||| || | ||||||| ||||||||| | ||| Sbjct 28752 TTCGTTGCTGAAACATAATCCGGGCATTAATCCACGCTTTTTAAGCCAAAATATCGATGC 28811 Query 37277 AAAAGATCCAGAAAAGAAAATACCTTCAACTGCTGCAAATGCTACAAGACGTGTACCGAA 37336 |||| ||| || || || || || || || |||||||| |||| | || || || Sbjct 28812 AAAACTACCACTGAAAAATATTCCCTCGACAGCAGCAAATGCAACAACTCTAGTTCCAAA 28871 Query 37337 AGTTGAACTATAATCAGAAATCCAtttttttGTCCAATCTGCCTTTAATTTAACACATTC 37396 ||| || | | ||| |||||| || ||| | || ||| | ||| ||| Sbjct 28872 AGTGGATTTTTTATCGCTAATCCAACGCAATGCCCATTGAGCTTTTTTCTGAACGCATGG 28931 Query 37397 AATTGTTTCAATTGCTTTTAA------------------GAGAAAGtttttttC------ 37432 || ||||| || || || || |||| | |||||| Sbjct 28932 CATAGTTTCGATGGCATTAAATAATTTATTCCTTTTTTCGAGATAATTTTTTATGACAAA 28991 Query 37433 -----------------TTCACTATCTGTTATATAAGTATCAATTAGTAAACTATACATT 37475 ||| |||| || | ||||| ||| |||| || | ||||||| Sbjct 28992 GAAAACTATTACTTTGTTTCTGTATCAGTAACATAAGAATCGATTAATAGAGAATACATT 29051 Query 37476 TCAGAGTGAATATTTTCAATAGCTATCTGAAAACCATAAAAACACCTAGCTTCAGATAAT 37535 || || ||||| |||||||| || || ||||||| ||||| | |||||| | | | Sbjct 29052 TCTGAATGAATGTTTTCAATTGCAATTTGAAAACTGTAAAATGCCTCAGCTTCGGGAATT 29111 Query 37536 TGAACATCGTTAAAAAACCTCTTAGCTAAGTTTTCATTAACTATCCCATCACTAGCTGCA 37595 | || || | || || || | | | |||||||| || || |||||||| || ||| Sbjct 29112 TTCACTTCTTGAATGAATCTTTCGACGAGATTTTCATTGACAATTCCATCACTGGCAGCA 29171 Query 37596 AAGAAAGCAAGAACATATTTTATAAAATGTCTTTCATCAT--TTGATAATTTTTTCCAAT 37653 || || |||||||| | | || |||| | |||||| | || || ||||||||| | Sbjct 29172 AAAAATGCAAGAACGTGAGTAATGAAATACCGTTCATCGTCATTCAT--TTTTTTCCAGT 29229 Query 37654 CATTAATATCTTTTGATAAATCAACTTCATCAACGGTCCAAAA 37696 | || |||||||||||||| |||||||| || |||||||| Sbjct 29230 GAGCAAAATCTTTTGATAAATTAACTTCATTTACAGTCCAAAA 29272 Score = 141 bits (156), Expect = 1e-28 Identities = 189/261 (72%), Gaps = 4/261 (2%) Strand=Plus/Plus Query 37438 TATCTGTTATATAAGTATCAATTAGTAAACTATACATTTCAGAGTGAATATTTTCAATAG 37497 |||| || | ||||| ||| |||| || | ||||||||| || ||||| |||||||| | Sbjct 31094 TATCAGTAACATAAGAATCGATTAATAGAGAATACATTTCTGAATGAATGTTTTCAATTG 31153 Query 37498 CTATCTGAAAACCATAAAAACACCTAGCTTCAGATAATTGAACATCGTTAAAAAACCTCT 37557 | || ||||||| ||||| | |||||| | | || || || | || || || | Sbjct 31154 CAATTTGAAAACTGTAAAATGCCTCAGCTTCGGGAATTTTCACTTCTTGAATGAATCTTT 31213 Query 37558 TAGCTAAGTTTTCATTAACTATCCCATCACTAGCTGCAAAGAAAGCAAGAACATATTTTA 37617 | | |||||||| || || |||||||| || ||||| || |||||||| | | | Sbjct 31214 CGACGAGATTTTCATTGACAATTCCATCACTGGCAGCAAAAAATGCAAGAACGTGAGTAA 31273 Query 37618 TAAAATGTCTTTCATCAT--TTGATAATTTTTTCCAATCATTAATATCTTTTGATAAATC 37675 | |||| | |||||| | || || ||||||||| | | || |||||||||||||| Sbjct 31274 TGAAATACCGTTCATCGTCATTCAT--TTTTTTCCAGTGAGCAAAATCTTTTGATAAATT 31331 Query 37676 AACTTCATCAACGGTCCAAAA 37696 |||||||| || |||||||| Sbjct 31332 AACTTCATTTACAGTCCAAAA 31352 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 592222162583280