Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schmidtea_20mediterranea_20[genbank_20GCA_5F000691995.1_202014-05- 30] 12,782 sequences; 700,725,851 total letters Query= NC_018875.1 Length=119082 Score E Sequences producing significant alignments: (Bits) Value seq10343 122 7e-23 seq9680 116 3e-21 seq62 107 1e-18 seq7081 82.4 6e-11 >seq10343 Length=31290 Score = 122 bits (134), Expect = 7e-23 Identities = 163/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 48540 CCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGAT 48599 || || |||| || || |||||||| | || ||||||||||||||| ||||| ||| Sbjct 25786 CCTCCTCTTAATCGTAAAACCAAATGCAATGTTGACTCTTTTTGAATATTATAATCTGAT 25727 Query 48600 AGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGA 48659 | | | ||| | || ||||| ||||| || ||||| |||| |||||||| || | ||| Sbjct 25726 AAAGTACGACCATCTTCCAATTGCTTGCCAGCAAAAATCAAACGCTGTTGGTCTGGTGGA 25667 Query 48660 ACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACC 48719 | || || || || ||||||| ||| ||| | | ||| || || | ||| || Sbjct 25666 ATTCCTTCTTTATCTTGAATCTTTGATTTAACATTTTCAATAGAATCAGATGACTCAACT 25607 Query 48720 TCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || | || || ||||| || || || ||||| ||||| |||||||| Sbjct 25606 TCAAGTGTTATAGTTTTCCCTGTTAATGTTTTAACAAAGATCTGCAT 25560 >seq9680 Length=90248 Score = 116 bits (128), Expect = 3e-21 Identities = 151/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 48558 ACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCC 48617 |||||||| || || || |||||||| || ||||| ||||| | ||||| | || || Sbjct 41735 ACCAAATGGAGAGTACTTTCTTTTTGGATGTTGTAGTCAGACAATGTTCGACCATCTTCT 41794 Query 48618 AACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTA 48677 || || || || || || || |||| ||||||||| | |||| ||| |||||||| | Sbjct 41795 AATTGTTTTCCAGCGAAGATTAGTCTCTGTTGATCTGGTGGAATGCCTTCCTTGTCTTGA 41854 Query 48678 ATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTT 48737 || || ||| ||| | | | ||||| | ||| || || | ||||| ||||| Sbjct 41855 ATTTTGGCTTTAACATTTTCAATGGTATCTGAAGACTCAACTTCAAGTGTAATTGTTTTA 41914 Query 48738 CCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 ||||| | ||||| |||||||||||||| Sbjct 41915 CCCGTTAGGGTTTTAACAAAAATCTGCAT 41943 >seq62 Length=83120 Score = 107 bits (118), Expect = 1e-18 Identities = 146/204 (72%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 48563 ATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTG 48622 ||||| ||| ||||| ||||||||||||||||||| | |||| |||| || || || Sbjct 2376 ATGTAATGTGGATTCTTTCTGAATATTGTAATCAGATAAAGTTCGTCCGTCTTCTAATTG 2317 Query 48623 CTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTT 48682 || |||||||| |||| ||| || ||||| | |||| ||| || ||||| ||| || Sbjct 2316 TTTTCCGGCAAAAATCAATCGTTGCTGATCAGGAGGAATGCCTTCTTTGTCTTGAATTTT 2257 Query 48683 TTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGT 48742 ||||||| | | | || || | || || || | || || ||||| ||||| Sbjct 2256 GGCTTTTACATTTTCAATTGTATCGGAAGATTCAACTTCAAGGGTTATTGTTTTACCCGT 2197 Query 48743 CAAAGTTTTTACAAAAATCTGCAT 48766 | ||| || |||||||| ||||| Sbjct 2196 AAGAGTCTTCACAAAAATTTGCAT 2173 >seq7081 Length=134943 Score = 82.4 bits (90), Expect = 6e-11 Identities = 146/212 (69%), Gaps = 6/212 (3%) Strand=Plus/Plus Query 48543 CCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGA 48602 || |||| || || |||||||| || || || ||| ||||||| |||||||| | | Sbjct 118566 CCTCTTAATCGTAAAACCAAATGGAGTGTAGATTCCTTTCGAATATTATAATCAGACAAA 118625 Query 48603 CTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACG 48662 | || || || || || || || || ||||| || |||| |||||||| | |||| Sbjct 118626 GTACGTTCATCTTCTAATTGTTTGCCAGCAAAAATGAGTCTTTGTTGATCTGGAGGAAAT 118685 Query 48663 CCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTC---TGACGCCTCCACC 48719 || || || || ||||||| ||| || | | || || ||| || ||| Sbjct 118686 CCTTCTTTATCTTGAATCTTTGCTTTCACCTTTTCAATAGTGTCACCTGATGCA---ACC 118742 Query 48720 TCCACCGTAATCGTTTTTCCCGTCAAAGTTTT 48751 || | ||||||||||| || ||||||||||| Sbjct 118743 TCGAGTGTAATCGTTTTACCGGTCAAAGTTTT 118774 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 380878257302586