Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schmidtea_20mediterranea_20[genbank_20GCA_5F000691995.1_202014-05- 30] 12,782 sequences; 700,725,851 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq3310 102 2e-16 seq4842 89.7 2e-12 seq2828 86.0 2e-11 >seq3310 Length=27653 Score = 102 bits (112), Expect = 2e-16 Identities = 182/262 (69%), Gaps = 4/262 (2%) Strand=Plus/Plus Query 302584 TTGATTAAACGACGCTGAATATAACCAGTTGTAGATGTTTTTACAGCTGTATCAATTAGA 302643 || || || || || ||||| ||||| ||| | ||||| || || || || || | | Sbjct 18608 TTCATCAACCGCCGTTGAATGTAACCGGTTTCCGCAGTTTTGACGGCCGTGTCGATGATA 18667 Query 302644 CCAACACGACCACCCATAGCATGGAAGAATAGCTCTTCCGGTCGTAGCCCCCCAATAAAG 302703 || | | |||||||||||| || ||||| | ||| |||| ||||| | | | | Sbjct 18668 CCTTCTCTACCACCCATAGCGTGAAAGAAAAACTCAGTCGGTGTCAGCCCAGCTAGATAT 18727 Query 302704 GAGCTCTCAACGAAACCACGCGCCTCGGGCGAATCGTCGAACTTGGTAAAGTGTGGCAGG 302763 ||| ||||||||||||| | | |||||| | ||| || |||| ||||| || Sbjct 18728 GAGTTCTCAACGAAACCTCTGGACTCGGGACCAAAATCGGTTTTAATAAAATGTGGTAGT 18787 Query 302764 GT--CCTGTTCTCATAGCCGTATGGGATACGCTTTCCATCAACGTTCTGCTGTCCCAGGC 302821 || ||||| | | | || ||||||| |||||||| || ||||||||||| || | | Sbjct 18788 GTTCGCTGTT-TGA-ATCCAAATGGGATTCGCTTTCCTTCGACGTTCTGCTGCCCTACAC 18845 Query 302822 ACGAAATCATCTGCGAAATATT 302843 | | |||| || |||||||| Sbjct 18846 AGGCTATCACTTGAGAAATATT 18867 >seq4842 Length=204163 Score = 89.7 bits (98), Expect = 2e-12 Identities = 220/328 (67%), Gaps = 8/328 (2%) Strand=Plus/Plus Query 289029 ACCAACAGCATCAATTTCGTCAATGAAAATCACACACGGAGAATTTTGTCTCGCAATTGC 289088 ||| || || |||||||| ||||||||||| | || || | ||| | | | || | | Sbjct 30454 ACCCACCGCGTCAATTTCATCAATGAAAATAATGCAAGGTGCATTCTTTTTGGCGTTATC 30513 Query 289089 AAATAATTCTCTTACACGGGATGCTCCAAGACCAACATACATTTCTACAAATTCAGAAGC 289148 ||| | || | || || || || || | ||| || ||||||| || || |||||| | Sbjct 30514 AAACATATCACGCACCCGAGACGCGCCTACACCCACGAACATTTCAACGAAATCAGAACC 30573 Query 289149 GGATA-CTTGAATGAATGTTACATTTGCTTCGCCTGCTACTGCCCTCGCCAGAAGTGTCT 289207 || | |||| || | || || |||||||| || | | | || || ||||| | Sbjct 30574 AGAAATGCTGAA-AAAAGGAACCTTGGCTTCGCCCGCAATCGATTTAGCAAGCAGTGTTT 30632 Query 289208 TACCTGTTCCAGGTGGTCCCTCTAATAGAACTCCCTTTGGTACTTTTGCCCCAGCAGACT 289267 |||| |||||||| || ||| ||| || | || | || | || |||| | ||| Sbjct 30633 TACCCGTTCCAGGGGGGCCCACTAGCAGTAGGCCATGAGGGA---TTCGCCCACCTAACT 30689 Query 289268 TAT--ATTTCTCAGGGCTC-TTTAAAAATTCTACAATTTCCTCAAGTTCATATTTTGCCT 289324 | | | || ||||||| ||||| || || || | ||| | | ||| | ||| || | Sbjct 30690 TTTGAAATTTAGAGGGCTCTTTTAAGAAGTCCACCACTTCTTTCACTTCCTCTTTGGCTT 30749 Query 289325 CATCACATCCTGCTACATCAGCAAAAGT 289352 ||||||| || || || || ||||| || Sbjct 30750 CATCACAGCCCGCCACGTCGGCAAAGGT 30777 >seq2828 Length=37213 Score = 86.0 bits (94), Expect = 2e-11 Identities = 173/257 (67%), Gaps = 0/257 (0%) Strand=Plus/Minus Query 133100 GACGAGATTTGGCAGATGTATAAAAAACAGCAAGATTTATTTTGGACTTCAACTGAAGTA 133159 || || || ||| | |||| ||| ||| | | || |||||||||| || |||||| Sbjct 29311 GAAGATATATGGGAAATGTTTAATAAAGCTCGATCTTCATTTTGGACTGTAAATGAAGTT 29252 Query 133160 GATTTATCCAAAGACCCAGCCCACTGGGAAGCCCTTACTGGGGATGAAAAACATTTTATT 133219 ||||||| ||||| || |||||| || | | || |||||| |||| ||| Sbjct 29251 AATTTATCAAAAGATTTTGCTCACTGGAAAAAAATGAATGACGATGAACGGTATTTCATT 29192 Query 133220 TCTATGATTTTAGCGTTTTTTGCTGCGAGTGATGGTATTGTTCTTGAAAATTTAGGAACA 133279 || || | || ||||||||||| |||||||| ||||| ||||||| | | | Sbjct 29191 ACTCACGTTCTTGCATTTTTTGCTGCCAGTGATGGAATTGTCAATGAAAATCTCGTCGAA 29132 Query 133280 CGGTTTATGGGAGAAGTTCAACTGGCCGAAGCCCGTGCCTTTTATGGGCTACAGATTGCG 133339 | || || |||||| || | ||||||| || ||||| | | || ||||| Sbjct 29131 AGATTCATTCAAGAAGTGAAAATTCCCGAAGCTGAGGCATTTTACAGTTTTCAAATTGCA 29072 Query 133340 ATGGAAAATATCCATTC 133356 || ||||| || ||||| Sbjct 29071 ATTGAAAACATTCATTC 29055 Score = 86.0 bits (94), Expect = 2e-11 Identities = 173/257 (67%), Gaps = 0/257 (0%) Strand=Plus/Minus Query 133100 GACGAGATTTGGCAGATGTATAAAAAACAGCAAGATTTATTTTGGACTTCAACTGAAGTA 133159 || || || ||| | |||| ||| ||| | | || |||||||||| || |||||| Sbjct 31391 GAAGATATATGGGAAATGTTTAATAAAGCTCGATCTTCATTTTGGACTGTAAATGAAGTT 31332 Query 133160 GATTTATCCAAAGACCCAGCCCACTGGGAAGCCCTTACTGGGGATGAAAAACATTTTATT 133219 ||||||| ||||| || |||||| || | | || |||||| |||| ||| Sbjct 31331 AATTTATCAAAAGATTTTGCTCACTGGAAAAAAATGAATGACGATGAACGGTATTTCATT 31272 Query 133220 TCTATGATTTTAGCGTTTTTTGCTGCGAGTGATGGTATTGTTCTTGAAAATTTAGGAACA 133279 || || | || ||||||||||| |||||||| ||||| ||||||| | | | Sbjct 31271 ACTCACGTTCTTGCATTTTTTGCTGCCAGTGATGGAATTGTCAATGAAAATCTCGTCGAA 31212 Query 133280 CGGTTTATGGGAGAAGTTCAACTGGCCGAAGCCCGTGCCTTTTATGGGCTACAGATTGCG 133339 | || || |||||| || | ||||||| || ||||| | | || ||||| Sbjct 31211 AGATTCATTCAAGAAGTGAAAATTCCCGAAGCTGAGGCATTTTACAGTTTTCAAATTGCA 31152 Query 133340 ATGGAAAATATCCATTC 133356 || ||||| || ||||| Sbjct 31151 ATTGAAAACATTCATTC 31135 Score = 84.2 bits (92), Expect = 6e-11 Identities = 116/160 (73%), Gaps = 2/160 (1%) Strand=Plus/Minus Query 133498 TTTTGCTACTCGTCTCGTTGCTTTTGCTGTAGTAGAGGGCAtttttttCAGTGGTGCGTT 133557 ||||| ||| | | ||||| ||||||| || ||||| || |||||||||||| ||| Sbjct 28872 TTTTGGAACTAGAGTTGTTGCATTTGCTGCTGTCGAGGGAATATTTTTCAGTGGTA-GTT 28814 Query 133558 CTGC-TCTATTTTTTGGCTTAAAAAGCGTGGTATTCTACCTGGACTGTGTTTTTCTAACG 133616 ||| || || |||||||||||||||||||| | | || ||| | ||||| |||| Sbjct 28813 TTGCATCGATATTTTGGCTTAAAAAGCGTGGATTAATGCCCGGATTATGTTTCAGCAACG 28754 Query 133617 AACTTATTTCAAGGGACGAGGCACTTCACACCGAATTTGC 133656 || | ||| | || || | |||||| ||| ||||| Sbjct 28753 AATTAATTAGCCGAGATGAAGGACTTCATTGCGATTTTGC 28714 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471576561351534