Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Schmidtea_20mediterranea_20[genbank_20GCA_5F000691995.1_202014-05-
30] 12,782 sequences; 700,725,851 total letters
Query= NC_023006.1
Length=43564
Score E
Sequences producing significant alignments: (Bits) Value
seq6794 165 2e-36
>seq6794
Length=1050243
Score = 165 bits (182), Expect = 2e-36
Identities = 425/638 (67%), Gaps = 21/638 (3%)
Strand=Plus/Plus
Query 3950 CCGGCCGAAGAAATCGTGCACGGCTTCCTTGAAGACATGGTGGGCCAGAAGCGCGGCCTG 4009
|| || || || || | |||||||| | || || ||||| || |||||||| ||
Sbjct 600365 CCAGCGGATGAGATTATTCACGGCTTTTTACCTGAAATTGTGGGGCAAAAGCGCGGTCTC 600424
Query 4010 CCGTGGATGGCCACCGCCCTGTACCGCATGCGCCAGATGGCCGCGATGGAACAGGCCGCC 4069
|| |||||||| || | || || ||| ||||| | | | | ||| | || ||
Sbjct 600425 CCATGGATGGCGACGGGGCTTTATCGCCTGCGCATGCTCAAAGGCTTTGAAGACGCTGCG 600484
Query 4070 ATCGTCAACGCCCGCGTTGGTGCCAACAAACTGGGTTTCATCACCTGGAAAGATGGCATG 4129
| || ||||| || |||| || ||| |||| | || |||||||| ||||
Sbjct 600485 CTGGTGAACGCTCGAATTGGCGCATCGAAAATGGGCGTGATTCAGTGGAAAGACGGCAGA 600544
Query 4130 GGGCCGGAGT---ACGACGAAGACGAAGAAA---TTGTGATCGACAGCGAGCCTGGCGAA 4183
||||| ||| ||||||||||| | | ||| ||| || |||||||| ||
Sbjct 600545 GGGCCAGAGATGGACGACGAAGACCGCGCCAACTTTGAGATGAACGCAGAGCCTGGGGAG 600604
Query 4184 TT--CAACGTGCTGCCGGCTGGCGCCGAGAT-TCACGAAACCAGCCCGCAGTACCCAAGC 4240
|| ||| | ||||||| ||||| || | ||| ||| | |||||| ||||| |||
Sbjct 600605 TTTTCAA--TCCTGCCGGAGGGCGCGGAATTGTCA-GAATGGAACCCGCAATACCCCAGC 600661
Query 4241 AACGAATATGCGCCGTTCGTGAAGCAGGCC---CTGCGCAGCATGGCTGCCGGCTTCGGC 4297
|||| | | ||| || | ||| |||||| |||| | || ||||| |||
Sbjct 600662 GGTGAATTTATGTTGTTT---AACAAAGCCATGCTGCGCGGCATATCGGCGGGCTTTGGC 600718
Query 4298 GTTCTGTACAACAACCTGGCCAGCGACCTGGAAGGCGTCAACTTCAGCAGCATTCGCCAA 4357
|| || |||||||| | |||| |||| | || ||||| ||| ||||| | ||
Sbjct 600719 GTGCTTTACAACAATTTAGCCAACGACTTAGAGAATGTCAATTTCTCAAGCATCAGGCAG 600778
Query 4358 GGCACCCTGGACGAACGCGAGCACTGGAAGGACCTGCAAGAGTGGCTGATTGAAAGCTTG 4417
|| || | ||||| |||||||| ||||| || ||||||||||||| |||||| | |||
Sbjct 600779 GGGACGTTAGACGAGCGCGAGCATTGGAAAGAAATGCAAGAGTGGCTCATTGAATGTTTG 600838
Query 4418 GTGCAGCCGATCTTCAACGCCTGGCTGCCGCGTGCGCTGCTGCTTGGACAGCTGACCAGC 4477
|||||||| | || | || ||| |||||| ||||| ||| || || | |
Sbjct 600839 GTGCAGCCAGTGTTTGAAGCGTGGTTGCCGCTAGCGCTACTGGGCGGGCACATCGCGGTA 600898
Query 4478 AACGGCAAGCCACTGCGCGCCGAGCGTATCGACCGCTACCGCAACGCTGTCAGCTGGCAG 4537
|| || |||| || || ||||| | | ||||| || | || | |||||
Sbjct 600899 AATGGGCGGCCATTGAAGGCTGAGCGGCTAAAACGCTA-TGCGCGGGTGGC--GTGGCAA 600955
Query 4538 GCTCGCCGCTGGCAGTGGATCGACCCGCGCGCTGACGT 4575
|| | |||||||||||||| |||||||| || |||||
Sbjct 600956 GCAAGGCGCTGGCAGTGGATAGACCCGCGGGCGGACGT 600993
Score = 113 bits (124), Expect = 1e-20
Identities = 271/410 (66%), Gaps = 0/410 (0%)
Strand=Plus/Plus
Query 6489 GGCATCAACGCCGTGGACTTCGCTGCGCTGTGGCCGTCGTATGCCGAGCTGGTGCAGATG 6548
||||||||||| |||| ||| |||| || || | | |||||| || ||||| |||
Sbjct 603283 GGCATCAACGCGGTGGCCTTTGCTGGAGTGAACCCCACCTTTGCCGAACTCGTGCAAATG 603342
Query 6549 GAAACCGAAATCGCGGCCGACAACGCCGACGTGAACCAGATGGCCTACGTGTCCAACGCC 6608
|| || | ||| ||| | ||| || ||||| | ||| |||||| | ||| |
Sbjct 603343 GAGACGGTAATTGCGCAGGCCAATGCAGACGTAGAGAGCATGTACTACGTCTTAAACCCT 603402
Query 6609 AAGTTCCGTGGCCACGCCAAGACCACTTCCAAGTTCGCAGGCGGCACCGACCAGGGCGTT 6668
| || ||| | || ||||| | | || || | ||| || || | | | ||
Sbjct 603403 GTGCAGCGCGGCAATGCTAAGACGGCGACAAAAATCCCTGGCATCAACGGCAGCGCCATT 603462
Query 6669 ATCTGGGAAGGTGGCGGCACCGTGAACGGCTACCGCTCCGAAATCACCAACCAGATTTCT 6728
|| ||||| | |||| |||| | || || || | || | | ||||| || |
Sbjct 603463 ATTTGGGAGGCTGGCAACACCATAAATGGTTATCAATCTCTTGTGTCTAACCAAATCAAT 603522
Query 6729 GACGGTGACGTGTTCTTCGGCAACTTCGGTGACCTGATTATCGGTCTGTGGGGCGGCCTG 6788
| || ||||||||||| || ||||||| ||| || | || || ||||||||||| |
Sbjct 603523 GCTGGCGACGTGTTCTTTGGTAACTTCGCCGACTTGCTCATTGGCATGTGGGGCGGCTTA 603582
Query 6789 GACCTGACCGTGGACCCGTACAGCCTGAGCAAGTCGGGCGGCCTGCGCGTCGTGGTCTTC 6848
|| ||| || ||||||||||||| ||| | ||| || | ||||| | | |||
Sbjct 603583 GAGCTGCATGTAGACCCGTACAGCCAAAGCCAAAAGGGACGCATCCGCGTGACGATATTC 603642
Query 6849 CAGGACGTGGACTTTGTTCTGCGCCGCGTCGAATCCATCTGCTGGGGCAA 6898
|| ||| | || |||| |||||||| | |||| |||||| |||||
Sbjct 603643 CAAGACATTGATTTTGCAGTGCGCCGCACCCAATCTTTCTGCTTAGGCAA 603692
Score = 104 bits (114), Expect = 7e-18
Identities = 411/629 (65%), Gaps = 42/629 (7%)
Strand=Plus/Plus
Query 1797 GACCGCCTGGAAGTTGAAGTGGTGGCCTGGGGCATCGGTGAGGAATCTTGGTC----GAT 1852
|||||||| |||| ||||| ||||| ||||| | ||||| ||||||||||| ||
Sbjct 598323 GACCGCCTAGAAGCCGAAGTAGTGGCGTGGGGAGTGGGTGAAGAATCTTGGTCAGTGGAC 598382
Query 1853 TGCGTATTACGTGCTGTGGGGTTCGCCCGAGCAAGGC---GACGTGTGGGAGGACCTGGA 1909
|| || ||| || |||||| ||||| ||| || || ||| || | ||
Sbjct 598383 TGGGTG--ACG--CTATGGGGTGA-CCCGATG--GGCATTGATGTTTGGTTAGATTTAGA 598435
Query 1910 CGACCTGCTGGCGTCCACCTACCAGCACGAAAGCGGCGCCGTTATGCCGATCATGGCAGC 1969
||| | || || ||||||||||| |||||||| | ||| |||| |||| |
Sbjct 598436 GGACTTTTTGAAAAGCAAATACCAGCACGAGAGCGGCGCGATGATGACGATTTCGGCAAC 598495
Query 1970 GGTGC-TGGACACTGGCGGCAGCAACGGCATGACCCAGGCGGCATACGACTACGCCAAGG 2028
|||| |||| || ||||| | ||||| || |||||||| || |||| |||||
Sbjct 598496 -GTGCATGGATACAGGCGGGACGGGCGGCACAACTCAGGCGGCGTATGACTGGCTCAAGG 598554
Query 2029 GCCGCACTGGTCGCCGGCTGTTCGCCGGCAAGGGTATCAGC-GGCTGGGGCCGACCGATC 2087
|| || ||| | | || | | |||||| || ||| ||||||||| || ||
Sbjct 598555 GCAAGACAGGTAAAAAGATATTTGGGGTCAAGGGAAT-AGCGGGCTGGGGCAAGCCCATT 598613
Query 2088 GTTGAG-AAGCCGCAGCGCAA--GCAGTCTGGCAAGAACGCGCGGAAAGTGGACCTGTTC 2144
| |||| ||||||| | || |||| | ||| || | | ||||||| | || | ||
Sbjct 598614 G-TGAGCCAGCCGCAAAGAAAGCGCAG-CGGGCGAG-ATGTGCGGAAAATTGATTTATTT 598670
Query 2145 CTGGTCGGCGTTGACGAAGCCAAGCTGATAGTCATGCGCCGCCTGGCTGCCACCGTGGCA 2204
| || ||||| ||||||||||| || | |||||||||| | |||
Sbjct 598671 TTAGTTGGCGTGGACGAAGCCAAATTGCTCATCATGCGCCG-------------TTTGCA 598717
Query 2205 GCCAAGGAACCCGGTGGCCCAGGCTACTGCCACACCCCAGCTGACCGCGATGAAGACTGG 2264
|| || | ||| | ||||| |||||| ||| ||| |||||| || |||
Sbjct 598718 GCTCTCTAA--AGTGGGCGCTGGCTATTGCCACGTCCCCATTGAGCGCGATTCCGAGTGG 598775
Query 2265 TACAAGCAGCTGACCGCTGAAAAGCTGGTGACCCGATACCTGAAGGGCCAGCCTGTGCGC 2324
||||| ||| | || || ||| | |||||| || ||||| || |
Sbjct 598776 TACAACCAGATTACGGCAGAACGCATAGTGACCAAATTTAGCAAGGGTTTCCCAAAGAAG 598835
Query 2325 GAGTGGCACAAGCCTGACCGTGCGCGAAACGAAGGCCTGGACTGCCGCGTGTACGCATAC 2384
|| |||||||| | || | | ||| ||||| | ||||| ||||||||||| ||| |
Sbjct 598836 GAATGGCACAAAAC-GA--GGGAGCGCAACGAGGCGCTGGATTGCCGCGTGTATGCACAG 598892
Query 2385 GCTGCGCTGAAGATCATGAACCCATCGTT 2413
|| ||| | || || || || ||||| ||
Sbjct 598893 GCAGCGTTAAAAATTATTAATCCATCCTT 598921
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 139262058725384
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |