Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schmidtea_20mediterranea_20[genbank_20GCA_5F000691995.1_202014-05- 30] 12,782 sequences; 700,725,851 total letters Query= NC_023719.1 Length=497513 Score E Sequences producing significant alignments: (Bits) Value seq6794 174 5e-38 >seq6794 Length=1050243 Score = 174 bits (192), Expect = 5e-38 Identities = 387/571 (68%), Gaps = 16/571 (3%) Strand=Plus/Minus Query 188632 TTAGATAATCATATTATTGGACAAGAAAAAGCAAAACGTCAATTAGCTGTATCAGTTTAT 188691 |||||| | || | | || |||||| ||| ||||| | || || | ||||| Sbjct 554259 TTAGATCACTATGTGGTGGGGCAAGAATTAGCCAAACGCACGCTCGCGGTTGCGGTTTAC 554200 Query 188692 AATCATTATAAGCGCATTAATGCTCTTAATGaaaaatcaaaaaatgatgatggagtaaag 188751 || ||||| ||||| || | || | | ||||||| | ||||| | || | | || Sbjct 554199 AACCATTACAAGCGGATGCA-GCAC--AGTGAAAAAGCCAAAAAAGGAGAAGTCG-AATT 554144 Query 188752 atcaaaaaaTCTAATGTTCTTTTAGTTGGCCCTACTGGTTCAGGTAAAACATTATTTGCT 188811 ||| |||| | ||| || | | |||| || || ||||| |||||||| | || ||| Sbjct 554143 ATCCAAAAGT--AATATTTTGCTGATTGGACCAACCGGTTCTGGTAAAACGCTCTTGGCT 554086 Query 188812 CAAACATTGGCTGATATGTTACATGTACCTCTAGCTATCTCTGATGCAACTTCTTTAACA 188871 ||||| |||| ||||| |||| ||| | || || | ||||| || | | || Sbjct 554085 CAAACCATGGCAAGAATGTTGGATGTGCCTTTTGCGATGGCCGATGCCACCACACTTACT 554026 Query 188872 GAAGCTGGTTATGTAGGTGAAGATGTGGAAAACGTATTGCTTC---GTTTAATCCAAGCA 188928 ||||| ||||| || |||||||||||||||||| |||| ||| || | ||| | Sbjct 554025 GAAGCGGGTTACGTGGGTGAAGATGTGGAAAAC--ATTG-TTCAAAAATTGCTGCAA--A 553971 Query 188929 GCTG--ATTACGATATCGAATTAGCGGAACGTGGAATTGTATATATCGATGAAGTAGATA 188986 ||| |||||||| | || |||| | || || || | ||||| |||||| | |||| Sbjct 553970 ACTGCAATTACGATGTGAAAAAAGCGCAGCGCGGCATCATTTATATTGATGAAATCGATA 553911 Query 188987 AAATTGCTAGAAAATCAGAAAGCACATCCATTACCCGAGATGTATCTGGCGAAGGAGTAC 189046 ||||| | | || || | | | | || || || || ||||| || || ||||| || | Sbjct 553910 AAATTTCACGCAAGTCGGCTAACCCTTCTATCACGCGTGATGTGTCGGGTGAAGGGGTGC 553851 Query 189047 AGCAAGCTTTATTAAAAATCATTGAAGGTACAGTTGCGAAAGTTCCTCCTCAAGGTGGTC 189106 |||| || | || ||| | || || || || || || ||||| |||| ||||| | Sbjct 553850 AGCAGGCGCTTTTGAAATTGATAGAGGGAACGACCGCAAATGTTCCGTCTCATGGTGGGC 553791 Query 189107 GTAAACACCCTCACCAAGAAATGCTTGAAATAGATACAACTAATATCTTGTTTATTCTTG 189166 | || ||| |||||||| || | | ||||| || ||||| ||||||||| | Sbjct 553790 GCAAGGTACCTAACCAAGAATATATTTCAGTCGATACCACCAATATTTTGTTTATTTGCG 553731 Query 189167 GTGGAGCGTTTGATGGTCTTGAAAACATTAT 189197 | || || |||| ||| |||||||| || || Sbjct 553730 GCGGGGCCTTTGCTGGGCTTGAAAAAATCAT 553700 Score = 105 bits (116), Expect = 2e-17 Identities = 118/158 (75%), Gaps = 0/158 (0%) Strand=Plus/Minus Query 46569 GGTaaaaaaaCAATTTTGTTTTTAGACGAAATACATCGTTTCAATAAAGGACAGCAAGAT 46628 || || ||||||||||| ||| |||| || || || || |||||||| |||||||||| Sbjct 450404 GGAAAGAAAACAATTTTATTTGTAGATGAGATTCACCGATTCAATAAGTCACAGCAAGAT 450345 Query 46629 TCGTTATTACCTTATGTTGAAGATGGAACAATTACGTTAATTGGTGCAACAACTGAAAAT 46688 | | | ||| |||||||| ||| | | || || || || || |||||||||||| Sbjct 450344 GCTCTTCTCCCTCATGTTGAAAGTGGCTTACTCACATTTATCGGCGCCACAACTGAAAAT 450285 Query 46689 CCATTTTTTGAAATTAACGGAGCTTTAATTTCTAGATC 46726 || | ||||||| ||||| ||||| | |||||||| Sbjct 450284 CCTTCTTTTGAAGTTAACTCTGCTTTGCTGTCTAGATC 450247 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1591649693828736