Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schmidtea_20mediterranea_20[genbank_20GCA_5F000691995.1_202014-05- 30] 12,782 sequences; 700,725,851 total letters Query= NC_024697.1 Length=370920 Score E Sequences producing significant alignments: (Bits) Value seq4321 196 1e-44 seq2439 116 9e-21 seq4489 98.7 2e-15 seq3310 91.5 3e-13 seq12620 89.7 1e-12 seq12141 86.0 1e-11 seq6363 86.0 1e-11 >seq4321 Length=90450 Score = 196 bits (216), Expect = 1e-44 Identities = 471/704 (67%), Gaps = 23/704 (3%) Strand=Plus/Minus Query 110465 TATTCATGCTACTCCTACCCTATTTAACGCAGGAACTAATGGA-GGACAATTGGCTTCTT 110523 ||| || ||| |||| || ||||||| || || ||| | | || ||| | || || Sbjct 82109 TATACACGCTTCTCCAACATTATTTAATGCTGGGT-TAAAGTATGGTCAACTCTCTAGTT 82051 Query 110524 GCTTTCTTCTAGGAATTAACGATGATTCTATTGAAGGTATTTATGATGCTCTTAAAGAAA 110583 | || || || ||| || ||||| |||||| || || | | | ||||||||||| Sbjct 82050 GTTTCCTATTAACAATGAAAGATGACAGTATTGATGGAATATTTAGTACTCTTAAAGAAT 81991 Query 110584 CTGCTCTTATTTCTAAAAACTCTGGAGGAATTGGTATTCACGTTCATGATATTCGCTCAA 110643 |||||||||||||||| | |||| || || ||| | | |||||| |||| | | | Sbjct 81990 GTGCTCTTATTTCTAAATATGCTGGTGGTATCGGTTTAAATGTTCATTGTATTAGAGCGA 81931 Query 110644 AAGGAGCAAATATC---GCAACAGCGAAGGGTGCTTCAACTGGACTTGTTCCAATGTTAA 110700 ||| || ||| | |||| || |||| || | |||| | ||||||| | Sbjct 81930 CTGGATCACCAATCAATGGAACA---AATGGTGTATCGAATGGATTAACTCCAATGCTCC 81874 Query 110701 GAGTCTTCAACGACACTGCAAAATATGTGAATCAAGGTGG---TAAGAGAAATGGCTCAT 110757 || || || | | || || || | |||||||| |||| || || ||| Sbjct 81873 AGGTATTTAATTATGCAGCTCGTTACGTCGACCAAGGTGGAAATAAGCGACCCGGTGCAT 81814 Query 110758 TTGCTATCTATCTCGAACCTTGGCATTCAGATATATTTGAATTCTTAGAACTTCGTAAAA 110817 | || || ||| | || || |||||||| || ||||| ||||| || ||| | ||||||| Sbjct 81813 TCGCCATTTATATTGAGCCATGGCATTCTGACATATTGGAATTTTTGGAATTGCGTAAAA 81754 Query 110818 ATCAAGGATTTGAAGAACAAAGAGCACGTGATTTATTTTATGCAATGTGGATTTCAGATT 110877 | || ||| |||| ||| ||| | |||||||||| || |||||||| |||||| Sbjct 81753 ACCACGGAGATGAATCGAAAAAAGCTAGAGATTTATTTTGCGCTTTGTGGATTCCAGATT 81694 Query 110878 TATTCATGAAACGTGTTCAAGAAAATGGCATGTGGTCTCTTATGTGTCCTCATCGTTCTC 110937 ||||||||||||| |||||| |||| | ||| | | ||| |||||| | | Sbjct 81693 TATTCATGAAACGAGTTCAAAGTGATGGGAATTGGACATTGATGGACCCTCATAAATGTG 81634 Query 110938 CTGGTCTATCTGATGTATATGGAAAAGAGTTTGAAGACCTTTACGAAAAATATGAAAAAG 110997 |||| || ||| | ||| || ||||||| | || || ||| ||||||| || Sbjct 81633 CTGGACTTCATGAATGCTGGGGAGAAAAGTTTGACAAACTCTATGAATTATATGAAGAA- 81575 Query 110998 AAGGCAAGTTTCGCAAACAA----ATTCCAGCTCAAGAACTT--TGGTTCAAAATCCTTG 111051 |||| | | | ||| || ||| |||| |||| || ||| ||||||| | Sbjct 81574 AAGG---GGATGGGAAATAAAACGATTAAAGCT--AGAATTTTGTGGAAAGAAATCCTCG 81520 Query 111052 AATCACAAGTTGAAACTGGAACTCCTTATATTTTGTATAAAGATCATATTAATCGCAAAT 111111 | |||||| | ||||| |||||||||||||| | || || || ||| ||| | Sbjct 81519 ATTCACAAATCGAAACCGGAACTCCTTATATGCTATACAAGGACGCCTGCAATGCCAAGT 81460 Query 111112 CTAATCAAATGAATTTAGGAACAATTAAGTCTAGTAATTTGTGC 111155 | ||||| | |||||||||| || || | || ||||||||| Sbjct 81459 CAAATCATCAGCATTTAGGAACGATCAAATGCAGCAATTTGTGC 81416 Score = 89.7 bits (98), Expect = 1e-12 Identities = 213/319 (67%), Gaps = 11/319 (3%) Strand=Plus/Minus Query 113016 GCACCAATGCCTACAGCTTCGACTGCACAGATTCTCGGTAATAATGAATGTTTCGAGCCA 113075 || || ||||| ||||| ||| | ||||||||||| || ||||||||||| ||| | Sbjct 79682 GCTCCTATGCCAACAGCGAGTACTTCTCAGATTCTCGGAAACAATGAATGTTTTGAGGCG 79623 Query 113076 ATTACAAGTAATATTTATGTCCGACGTGTTCTAGCAGGTGAGTTTGTACTTTGTAATAAA 113135 | |||| ||||| ||| | |||| ||| || || || ||||| || |||| | Sbjct 79622 TTCTCAAGCAATATCTATTTAAGACGAGTTTTAAGCGGGGAATTTGTTGTTGTAAATAGA 79563 Query 113136 TATCTGCAAGAAGAACT-TCTCG---GAATCGGTAAATGGAACAATGAAGTGAAAAACTC 113191 ||| | ||||| || ||| ||||| | ||| |||| |||| || | Sbjct 79562 TATTTAATTGAAGATCTGATTCGGTTGAATCTG----TGGTCAGATGATATGAAGAATGC 79507 Query 113192 CATTATTGCTAATCAAGGTTCGGTTCAACATCTAAAA---TTGCCTGATTGCGTGAAAGA 113248 ||||||||| |||| ||||| | ||| || | || | || ||| ||||||| Sbjct 79506 CATTATTGCCAATCGTGGTTCCATACAAAATATCCAAGGTCTTCCCGATGAAATGAAAGA 79447 Query 113249 TGTATTTAAGACTATTTGGGAAATTAAGCAACGTGTCGTAATTGATATGGCTGCAGATCG 113308 ||||||| ||| ||||||||||| | ||| || | || | ||||||| || | Sbjct 79446 GTTATTTAAAACTGTTTGGGAAATTCATCAATCGGTTATCATAAAATTGGCTGCCGACAG 79387 Query 113309 TGGCAAGTTTATCGATCAA 113327 | |||||| |||||| Sbjct 79386 AGCTCCGTTTATTGATCAA 79368 >seq2439 Length=307782 Score = 116 bits (128), Expect = 9e-21 Identities = 129/173 (75%), Gaps = 12/173 (7%) Strand=Plus/Minus Query 305322 ATGATTGGGTTCTGTTCAATAGGCAACCATCACTGCATAAAATGTCTATGATGGCTCATA 305381 |||||| ||| | || ||| | |||||| | || || ||||||||||||||| |||| Sbjct 197569 ATGATTTTGTTATTTTTAATCGTCAACCAACTCTTCACAAAATGTCTATGATGTGTCATC 197510 Query 305382 AAGTCAAAGTATTATCTGGATTGACATTTCGATTAAAT------GTAAGTGCTTGTACGC 305435 ||| ||||| ||| | | |||||||| |||||| |||| ||| | Sbjct 197509 GAGTAAAAGTTTTACCGTTTTCAACATTTCGGTTAAATCTTTCCGTAACGGCT------C 197456 Query 305436 CTTATAATGCGGATTTTGATGGAGATGAAATGAATATGCATGTACCTCAATCA 305488 |||||||||| |||||||||||||||||||||||| ||||| | |||||| || Sbjct 197455 CTTATAATGCTGATTTTGATGGAGATGAAATGAATTTGCATATGCCTCAAACA 197403 Score = 86.0 bits (94), Expect = 1e-11 Identities = 123/171 (72%), Gaps = 2/171 (1%) Strand=Plus/Minus Query 227255 ATGATGATTTTATAATTGTGAATCGTCAGCCATCATTACATAAAAAATCAATATTATGTC 227314 ||||||||||| | ||| | |||||||| ||| | | || |||| || || | |||| Sbjct 197572 ATGATGATTTTGTTATTTTTAATCGTCAACCAACTCTTCACAAAATGTCTATGATGTGTC 197513 Query 227315 ATCGTGTTAGAATCCATAAGGATTT-AGCAATTAGATTGAATCCTAATGTGACAGAGGGC 227373 |||| || | | | || | ||| | || || | || |||| | || || | Sbjct 197512 ATCGAGTAAAAGTTT-TACCGTTTTCAACATTTCGGTTAAATCTTTCCGTAACGGCTCCT 197454 Query 227374 TATAATGCAGATTTTGATGGAGATGAAATGAATGTCCATATACCTCAATCA 227424 |||||||| |||||||||||||||||||||||| | ||||| |||||| || Sbjct 197453 TATAATGCTGATTTTGATGGAGATGAAATGAATTTGCATATGCCTCAAACA 197403 >seq4489 Length=36887 Score = 98.7 bits (108), Expect = 2e-15 Identities = 169/244 (69%), Gaps = 10/244 (4%) Strand=Plus/Minus Query 72169 ACTTTGCCAAACACAACGTGTTTGTTATTTA---AAT--GTGGTTGAGGTGCAAGTGTAA 72223 |||| ||||||||||| |||||| || | ||| ||| || ||| |||| Sbjct 3470 ACTTCTCCAAACACAACATGTTTGCCATCAAGCCAATTAGTGATTACTGTG-----GTAA 3416 Query 72224 TGAAGAATTGCGAGTTATTTGAATCAGGACCCGAGTTAGCCATAGAAACCAAACCTGCTT 72283 |||| ||||| ||| ||||| || ||||| | || ||||| || | | || | || Sbjct 3415 TGAAAAATTGAGAGCCATTTGTATTTGGACCTGCATTTGCCATTGACAAAAGTCCGGGTT 3356 Query 72284 CTGAATGCTTTAATAAGAAATTCTCATCTTCAAAAGTTTCTCCATATATACTTTGACCTG 72343 | |||||||| | ||||| ||||||||||| |||| ||||| ||||||| || Sbjct 3355 TAGTATGCTTTATTTTAAAATTTTCATCTTCAAATTTTTCACCATAAATACTTTTTCCAC 3296 Query 72344 AGCTTCCATCAAAGTTCACAATATCACCTCCTTGAACCATAAAATTATTAATTACTCTAT 72403 | |||||| | || ||| |||||||||| ||||||||| |||||||||| Sbjct 3295 CGGTTCCATTTCCTCTAGTAAAATCGCCTCCTTGAAGCATAAAATTTGGTATTACTCTAT 3236 Query 72404 GGAA 72407 | || Sbjct 3235 GAAA 3232 >seq3310 Length=27653 Score = 91.5 bits (100), Expect = 3e-13 Identities = 128/178 (72%), Gaps = 9/178 (5%) Strand=Plus/Minus Query 305313 TGAATGACAATGATTGGGTTCTGTTCAATAGGCAACCATCACTGCATAAAATGTCTATGA 305372 ||||||| ||||| || | |||||| ||||||| | || |||||||||||||||| Sbjct 19853 TGAATGA---TGATTTCGTGGTTTTCAATCGGCAACCTACTCTCCATAAAATGTCTATGA 19797 Query 305373 TGGCTCATAAAGTCAAAGTATTATCTGGATTGACATTTCGATTAAATGTAAGTG---CTT 305429 ||| ||| ||||| || ||| | | ||||||||| || ||| | || || Sbjct 19796 TGGGCCATCGTGTCAAGGTGTTACCGTTTTCGACATTTCGTTTGAATCTTTCTGTCACTG 19737 Query 305430 GTACGCCTTATAATGCGGATTTTGATGGAGATGAAATGAATATGCATGTACCTCAATC 305487 || ||||| ||||| ||||| |||||||| || |||||| | || | || ||||| Sbjct 19736 GT---CCTTACAATGCCGATTTCGATGGAGACGAGATGAATTTACACATGCCACAATC 19682 >seq12620 Length=10758 Score = 89.7 bits (98), Expect = 1e-12 Identities = 118/160 (74%), Gaps = 3/160 (2%) Strand=Plus/Plus Query 167188 ATCTTTTTTATCGAAATAT-TTCAAAAGAGCACCTAAAATCTTTATTAATTATCATTACA 167246 || |||| | || || || || |||||| ||| | || || || || | ||| | Sbjct 1158 ATTTTTTCTCTCAAACTAACTTGAAAAGAACACATCAACGTTTCATCAACTGACATCATT 1217 Query 167247 CCACCAGCATTATCGAATTCATTCGC-ATAATTTGGTGCTGAAAATACAGTAACTAATTT 167305 | ||||||||||||||||| | | | |||||| || || ||||||| ||| || |||| Sbjct 1218 GCTCCAGCATTATCGAATTC-TCCACAATAATTAGGAGCAGAAAATAAAGTTACCAATTG 1276 Query 167306 ACGATTGAAAAATAATTCATAACCATCTTCAACAACTTCA 167345 || ||| ||| ||||||||||||||||| ||||| ||| Sbjct 1277 TCGTTTGGCAAAGAATTCATAACCATCTTCTACAACCTCA 1316 >seq12141 Length=28494 Score = 86.0 bits (94), Expect = 1e-11 Identities = 84/103 (82%), Gaps = 4/103 (4%) Strand=Plus/Minus Query 167253 GCATTATCGAATTCATTCGCA-TAATTTGGTGCTGAAAATACAGTAACTAATTTACGAT- 167310 ||||||| |||||||| ||| ||||| || || ||||| | ||| |||||||| || | Sbjct 19177 GCATTATTAAATTCATT-GCAGTAATTAGGAGCAGAAAAAATAGTTACTAATTTTCGTTG 19119 Query 167311 TGAAAAATAATTCATAACCATCTTCAACAACTTCATGGGCACG 167353 || |||| |||||||||||||| |||||||||| ||| || || Sbjct 19118 TGCAAAA-AATTCATAACCATCCTCAACAACTTGATGCGCTCG 19077 >seq6363 Length=130278 Score = 86.0 bits (94), Expect = 1e-11 Identities = 96/126 (76%), Gaps = 2/126 (2%) Strand=Plus/Minus Query 167243 TACACCACCAGCATTATCGAATTCATTCGCA-TAATTTGGTGCTGAAAATACAGTAACTA 167301 || |||||||||||||||||||||| | || |||||||| || ||||||| || || | Sbjct 45230 TATACCACCAGCATTATCGAATTCAC-CACAGTAATTTGGCGCAGAAAATATTGTGACAA 45172 Query 167302 ATTTACGATTGAAAAATAATTCATAACCATCTTCAACAACTTCATGGGCACGTATTACAA 167361 || | |||| || |||||||||||||| ||||| |||| || || | | ||| | Sbjct 45171 ATGATCTATTGGCGAAAAATTCATAACCATCCTCAACTACTTGGTGAGCTCTAACTACCA 45112 Query 167362 GTTCAA 167367 | |||| Sbjct 45111 GATCAA 45106 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1186618436409502