Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schmidtea_20mediterranea_20[genbank_20GCA_5F000691995.1_202014-05- 30] 12,782 sequences; 700,725,851 total letters Query= NC_025412.1 Length=369360 Score E Sequences producing significant alignments: (Bits) Value seq3336 109 1e-18 seq7787 84.2 5e-11 >seq3336 Length=143284 Score = 109 bits (120), Expect = 1e-18 Identities = 155/216 (72%), Gaps = 4/216 (2%) Strand=Plus/Minus Query 206164 AAAATGTACCAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAA 206223 |||||| ||||||||| ||||| || || || || || || ||||||||||| ||| Sbjct 130791 AAAATG---CAGATATTTGTTAAAACTCTTACTGGTAAGACAATAACTTTGGAAGTTGAA 130735 Query 206224 AGTTCTGACACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCG 206283 || ||| ||||| | ||| |||||||| || ||||||| |||| | || Sbjct 130734 TCAAGCGATACAATCGAAAATATGAAGGCTAAGATTCAGGACAAAGAAG-AATTCTACCT 130676 Query 206284 GACGCTCAAAGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGAT 206343 || |||||| | || || ||||||||||| || || ||||| | ||||| ||||| Sbjct 130675 GATCAACAAAGATTAATTTTTGCCGGAAAGCAATTAGAGGATGGTCGAACTTTATCCGAT 130616 Query 206344 TACAACGTCCAGAAAGAGTCTACTCTTCACCTTGTT 206379 || || | |||||||| || ||||| ||| | ||| Sbjct 130615 TATAATATTCAGAAAGAATCAACTCTCCACTTAGTT 130580 Score = 107 bits (118), Expect = 5e-18 Identities = 151/210 (72%), Gaps = 4/210 (2%) Strand=Plus/Minus Query 206164 AAAATGTACCAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAA 206223 |||||| ||||||||| ||||| || || || || || || ||||||||||| ||| Sbjct 129281 AAAATG---CAGATATTTGTTAAAACTCTTACTGGTAAGACAATAACTTTGGAAGTTGAA 129225 Query 206224 AGTTCTGACACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCG 206283 || ||| ||||| | ||| |||||||| || ||||||| |||| | || Sbjct 129224 TCAAGCGATACAATCGAAAATATGAAGGCTAAGATTCAGGACAAAGAAG-AATTCTACCT 129166 Query 206284 GACGCTCAAAGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGAT 206343 || |||||| | || || ||||||||||| || || ||||| | ||||| ||||| Sbjct 129165 GATCAACAAAGATTAATTTTTGCCGGAAAGCAATTAGAGGATGGTCGAACTTTATCCGAT 129106 Query 206344 TACAACGTCCAGAAAGAGTCTACTCTTCAC 206373 || || | |||||||| || ||||| ||| Sbjct 129105 TATAATATTCAGAAAGAATCAACTCTCCAC 129076 >seq7787 Length=20266 Score = 84.2 bits (92), Expect = 5e-11 Identities = 139/198 (70%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 206176 ATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACA 206235 |||||| ||||| | | ||| |||||||| || | || || | | |||||| Sbjct 11718 ATATTTGTGAAAACTTTGAAAGGTAAAACGATTACACTCGAGGTTGCATCAGGTGACACC 11659 Query 206236 GTCGAATCAGT-AAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAG 206294 | ||| ||| |||||||| ||||||||| | ||||||| || || || ||||| Sbjct 11658 ATTGAAAAAGTGAAAGCAAA-GATTCAAGATATAGAAGGATTTCCTCCCGATCAACAAAG 11600 Query 206295 ACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCA 206354 ||| || || || || || || || ||||||||| | |||||| | ||||| || | || Sbjct 11599 ACTCATTTTTGCTGGCAAACAATTAGAAGATGGACGTACTTTGTCTGATTATAATATTCA 11540 Query 206355 GAAAGAGTCTACTCTTCA 206372 || || ||||| || || Sbjct 11539 AAAGGAATCTACACTCCA 11522 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1181627253946222