Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schmidtea_20mediterranea_20[genbank_20GCA_5F000691995.1_202014-05- 30] 12,782 sequences; 700,725,851 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq2828 251 1e-61 seq4321 228 1e-54 seq2867 111 2e-19 >seq2828 Length=37213 Score = 251 bits (278), Expect = 1e-61 Identities = 435/633 (69%), Gaps = 52/633 (8%) Strand=Plus/Plus Query 39598 TAAATGTTTAAACATTAAGCAGGCGAAGTCACAATGTAGGCCCTCATCTCTACTAATTAA 39657 ||||| ||||||||| || || || || || ||||| || || ||||||| |||||||| Sbjct 28692 TAAATATTTAAACATCAAACAAGCAAAATCGCAATGAAGTCCTTCATCTCGGCTAATTAA 28751 Query 39658 TTCGTTA--GAAA-ATGTGAGTCCAGGCATTAGACCACGCTTTTTGAGCCAAAATATGGC 39714 |||||| |||| || | ||| ||||||| ||||||||||| ||||||||||| | Sbjct 28752 TTCGTTGCTGAAACAT---AATCCGGGCATTAATCCACGCTTTTTAAGCCAAAATATCGA 28808 Query 39715 AGCAAAAGATCCAGAAAAGAAGATGCCTTCTACTGCTGCAAATGCAACAAGTCTCTCTCC 39774 |||||| ||| || || || || || || || ||||||||||||| ||| ||| Sbjct 28809 TGCAAAACTACCACTGAAAAATATTCCCTCGACAGCAGCAAATGCAACAACTCTAGTTCC 28868 Query 39775 GTAACTTGTATCATTATGT---ATCCACTTCTGTGCCCAATCAGCTTTCTTCTTTACACA 39831 || | | | |||| ||||| | |||||| | |||||| |||| || || Sbjct 28869 AAAAGTGGATTTTTTATCGCTAATCCAACGCAATGCCCATTGAGCTTTTTTCTGAACGCA 28928 Query 39832 AGGCATTGTTTCTATAGCATTAAA------------------GAGATAATGTTTTTCATC 39873 ||||| ||||| || |||||||| |||||||| |||| | Sbjct 28929 TGGCATAGTTTCGATGGCATTAAATAATTTATTCCTTTTTTCGAGATAATTTTTTATGAC 28988 Query 39874 A-------CTAT--CTTT--------------AACATATGTATCTATTAACAGACTATAC 39910 | |||| |||| |||||| | ||| ||||| ||| |||| Sbjct 28989 AAAGAAAACTATTACTTTGTTTCTGTATCAGTAACATAAGAATCGATTAATAGAGAATAC 29048 Query 39911 ATTTCTGAATGGATGTTTTCAATCGCCATCTGAAATCCGTAAAA-ACATCTTGCTTCAGT 39969 ||||||||||| ||||||||||| || || ||||| | |||||| | || ||||| | Sbjct 29049 ATTTCTGAATGAATGTTTTCAATTGCAATTTGAAAACTGTAAAATGCCTC-AGCTTCGGG 29107 Query 39970 AATTTGTACCTCTGAACAAAATCTTTCCGCCAAATTTTCATTCACTATTCCATCACTAGC 40029 ||||| || ||| | |||||||| | | ||||||||| || ||||||||||| || Sbjct 29108 AATTTTCACTTCTTGAATGAATCTTTCGACGAGATTTTCATTGACAATTCCATCACTGGC 29167 Query 40030 GGCAAAAAATGCCAATACATGTTTAATAAAATATTTTTCATCGGGTGTCAATTTATTCCA 40089 ||||||||||| | || || |||| ||||| ||||||| ||| ||| ||||| Sbjct 29168 AGCAAAAAATGCAAGAACGTGAGTAATGAAATACCGTTCATCGTCATTCATTTTTTTCCA 29227 Query 40090 GTCATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAAAACGACGCCTCTGCCTT 40149 || | | ||||||||||| || ||||| | | |||||||| || | || || Sbjct 29228 GTGAGCAAAATCTTTTGATAAATTAACTTCATTTACAGTCCAAAATGAAGATCGAGCTTT 29287 Query 40150 TTTGTACATGTTCCATATATCACGATATTGTAT 40182 || |||| | ||||||||| ||||||||| Sbjct 29288 ATTAAACATTTCCCATATATCTTCATATTGTAT 29320 Score = 179 bits (198), Expect = 5e-40 Identities = 226/308 (73%), Gaps = 2/308 (1%) Strand=Plus/Plus Query 39876 TATCTTTAACATATGTATCTATTAACAGACTATACATTTCTGAATGGATGTTTTCAATCG 39935 |||| ||||||| | ||| ||||| ||| ||||||||||||||| ||||||||||| | Sbjct 31094 TATCAGTAACATAAGAATCGATTAATAGAGAATACATTTCTGAATGAATGTTTTCAATTG 31153 Query 39936 CCATCTGAAATCCGTAAAA-ACATCTTGCTTCAGTAATTTGTACCTCTGAACAAAATCTT 39994 | || ||||| | |||||| | || ||||| | ||||| || ||| | |||||| Sbjct 31154 CAATTTGAAAACTGTAAAATGCCTC-AGCTTCGGGAATTTTCACTTCTTGAATGAATCTT 31212 Query 39995 TCCGCCAAATTTTCATTCACTATTCCATCACTAGCGGCAAAAAATGCCAATACATGTTTA 40054 || | | ||||||||| || ||||||||||| || ||||||||||| | || || || Sbjct 31213 TCGACGAGATTTTCATTGACAATTCCATCACTGGCAGCAAAAAATGCAAGAACGTGAGTA 31272 Query 40055 ATAAAATATTTTTCATCGGGTGTCAATTTATTCCAGTCATTGATATCTTTTGATATATCT 40114 || ||||| ||||||| ||| ||| ||||||| | | ||||||||||| || Sbjct 31273 ATGAAATACCGTTCATCGTCATTCATTTTTTTCCAGTGAGCAAAATCTTTTGATAAATTA 31332 Query 40115 ACTTCTTCAGCTGTCCAAAACGACGCCTCTGCCTTTTTGTACATGTTCCATATATCACGA 40174 ||||| | | |||||||| || | || || || |||| | ||||||||| | Sbjct 31333 ACTTCATTTACAGTCCAAAATGAAGATCGAGCTTTATTAAACATTTCCCATATATCTTCA 31392 Query 40175 TATTGTAT 40182 |||||||| Sbjct 31393 TATTGTAT 31400 >seq4321 Length=90450 Score = 228 bits (252), Expect = 1e-54 Identities = 516/769 (67%), Gaps = 10/769 (1%) Strand=Plus/Plus Query 69277 GATGCTAGATTACAAACTGCTACCTCATTAGAATTTGCATATTGTATTATCTCTGTACAT 69336 || || | ||| ||||| |||| |||| || | ||||| || || ||||| || Sbjct 81360 GAAGCCAAATTGCAAACAGCTATTTCATCAGGAGAACTATATTCTACAATTTCTGTGCAC 81419 Query 69337 AGATTACTACATTTGATAGTCCCCAGATTTTGCTGATTACTCTTTTTGTTACAGGCGTCC 69396 | ||| || |||||||| || || | || || ||||| ||| || ||||||||| Sbjct 81420 AAATTGCTGCATTTGATCGTTCCTAAATGCTGATGATTTGACTTGGCATTGCAGGCGTCC 81479 Query 69397 TTGTAAAGAATAAACGGAGTACCAGTTTCAATCTGAGATTCGATAATAGATTTCCAAACG 69456 ||||| || ||| | ||||| || ||||| || || || |||| || |||||| | Sbjct 81480 TTGTATAGCATATAAGGAGTTCCGGTTTCGATTTGTGAATCGAGGATTTCTTTCCACAAA 81539 Query 69457 ACCCTAGCATTTATTACGGTCTTGTAACGCTTCTCTTTT--TCATATTGTGTATATAGCC 69514 | ||||| || || || | | | | | | ||||| |||||| | ||| || Sbjct 81540 ATTCTAGCTTTAAT--CGTTTTATTTCCCATCCCCTTTTCTTCATATAATTCATAGAGTT 81597 Query 69515 GTTCGAATTCATCTCCCCAAACATCATCCAATCCAGGACATTCATTTGGACACATCAATG 69574 || || | |||||||| |||| | ||||| ||||| || || |||||||| Sbjct 81598 TGTCAAACTTTTCTCCCCAGCATTCATGAAGTCCAGCACATTTATGAGGGTCCATCAATG 81657 Query 69575 ACCACACATCATCATCCTTAACTCGTTTCATAAATAGATCGGGAATCCAAAGAGCTATAA 69634 ||| ||||| | |||||||||||| |||| ||| |||||||| | ||| || Sbjct 81658 TCCAATTCCCATCACTTTGAACTCGTTTCATGAATAAATCTGGAATCCACAAAGCGCAAA 81717 Query 69635 AGAGATCTCTGGTTCTATTTTC--TTCATTTCCTGTAttttttttAAGATCGAGAAACTC 69692 | | |||||| | || ||||| ||||| ||| ||||| | || | ||| || Sbjct 81718 ATAAATCTCTAG--CTTTTTTCGATTCATCTCCGTGGTTTTTACGCAATTCCAAAAATTC 81775 Query 69693 CATAATATCAGAATGCCATGGTTCTAGATATATCGCCATGACTCCCGGTCGTTTATTTCC 69752 || || |||||||||||||| || | ||| || || | | || ||||| |||||||| Sbjct 81776 CAATATGTCAGAATGCCATGGCTCAATATAAATGGCGAATGCACCGGGTCGCTTATTTCC 81835 Query 69753 TCCCTGATCTATGTATCTGGCAGTGTTATTATAGACTCTCAGCATCGGAATAATACCATT 69812 || || || | ||| | || | | |||| | || ||||| ||| | | ||||| Sbjct 81836 ACCTTGGTCGACGTAACGAGCTGCATAATTAAATACCTGGAGCATTGGAGTTAATCCATT 81895 Query 69813 AGATTTACCATTTGTTCCAGAAATATAACTTCCTCTTGCGCGAATATTACTAATAGATAG 69872 ||| ||||||||||||| || ||| | || | |||| | || | || Sbjct 81896 CGATACACCATTTGTTCCATTGATTGGTGATCCAGTCGCTCTAATACAATGAACATTTAA 81955 Query 69873 ACCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAACGTTTCAATGTGTCATATATACC 69932 ||| || || || || |||||| || |||||||| ||| | || | |||| || Sbjct 81956 ACCGATACCACCAGCATATTTAGAAATAAGAGCACATTCTTTAAGAGTACTAAATATTCC 82015 Query 69933 CTCTATGCTATCATCTATCA-TGTTAAGAAGAAAACAGCTAGACATTTGATGATGTATAG 69991 || || || |||||| ||| |||||| || ||||| ||||| | |||| || | Sbjct 82016 ATCAATACTGTCATCTTTCATTGTTAA-TAGGAAACAACTAGAGAGTTGACCATACTTTA 82074 Query 69992 TTCCCGCATTAAATAATGTAGGAGATGCGTGAGTGAACCATTTTTCAGA 70040 || |||||||||||||| ||||| ||||| | |||||||| || || Sbjct 82075 ACCCAGCATTAAATAATGTTGGAGAAGCGTGTATAAACCATTTCTCTGA 82123 Score = 149 bits (164), Expect = 9e-31 Identities = 495/765 (65%), Gaps = 64/765 (8%) Strand=Plus/Plus Query 68493 ATGAATATTCATCGATTGACTTTGATCGATGAAAGCTCCTCTATCTGCCGCCATTTTTAT 68552 ||| | |||||| |||||||||||| || || | |||| || || |||| |||||| Sbjct 79347 ATGGAAATTCATACTTTGACTTTGATCAATAAACGGAGCTCTGTCGGCAGCCAATTTTAT 79406 Query 68553 AATACTCTTTTGAGGAATTTCCCAAATAGTCTTAAAAATCTGTTTGATATCATCTGGAAG 68612 ||| | |||| |||||||||||| ||| ||||| | || ||| || ||||| ||||| Sbjct 79407 GATAACCGATTGATGAATTTCCCAAACAGTTTTAAATAACTCTTTCATTTCATCGGGAAG 79466 Query 68613 GC--TCG-TATTTTGAATGGATCCACCATCGGATATAATTATATTCTTGATCTCATCATT 68669 | | | ||||||| ||||| |||| || || ||||| |||||| || ||||| Sbjct 79467 ACCTTGGATATTTTGTATGGAACCACGATTGGCAATAATGGCATTCTTCATATCATCTGA 79526 Query 68670 CCACAATTTTCTCTCCGTTAAAACTCTAAGGAGATGCGGATTAACTATTTGAAATTCCCC 68729 ||||| || | | | | || || | || ||| || | ||||||||| Sbjct 79527 CCACAGATTCAACCGAATCAGATCTTCAATTAAATATCTATTTACAACAACAAATTCCCC 79586 Query 68730 AGATAACACTCTACGAGTGTAAATATTACTGGTATATGGTTCCACAGATTCATTATTTCC 68789 ||| |||| | || ||||| || | | | || | | ||||||| ||||| Sbjct 79587 GCTTAAAACTCGTCTTAAATAGATATTGCTTGAGAACGCCTCAAAACATTCATTGTTTCC 79646 Query 68790 CAGAATTTGAGCAGTTGATGCAGTTGGCATAGGTGCCACCAATAAACTATTTCTAAGACC 68849 ||||| |||| ||| || ||||||||||| || || ||||| ||||| | || || Sbjct 79647 GAGAATCTGAGAAGTACTCGCTGTTGGCATAGGAGCAACTAATAAGCTATTACGAACTCC 79706 Query 68850 ATGTGTT----ATGA--------------TTTTATCTTTT---AGATG---------TTT 68879 || | | |||| | ||||| | | ||| ||| Sbjct 79707 ATATCTACAAAATGAAAAATCCAGAAGCTTATTATCACTAGTAAAATGCATTTCTACTTT 79766 Query 68880 CCAAT------CCCAAAG--------ATCA-GATGGT----ACA----ACATTCCAAAGA 68916 |||| || || |||| ||| || ||| |||||||| | | Sbjct 79767 GCAATATCTAGCCTTAATTGTGGCCAATCAAGATAGTCACTACATTTGACATTCCACATA 79826 Query 68917 TCGTATTGTAGAATTCCGTTACTTGCATATGATCCATTATATGTTTCATAAGGTCCTTCC 68976 || || |||| ||| ||||| | || || |||||||||||||||| ||| | Sbjct 79827 TCAGGCTGGAGAACTCCTTTACTAACCGGAGAGCCTTTATATGTTTCATAAGTTCCAAAC 79886 Query 68977 TGTTCAGCTAGTTCACA--ACTTGCCTCTAA-TGCACCGTAATAAATTGTTTCGAAAATC 69033 | || |||| |||||| |||| | ||| ||||| ||||||| || || ||||| Sbjct 79887 TTTTTCGCTAATTCACACGACTT---TTTAAGAGCACCAAAATAAATAGTCTCAAAAATT 79943 Query 69034 TTCTTATTGAGATCTTG-TGCTTCTAGACTATCGAATGGATAATGTAAAAGAATAAATGC 69092 |||||| | || ||| || || ||| || |||||||| | || | ||| | Sbjct 79944 CGCTTATTCA-ATTTTGCAGCCTCATCACTTTCAAATGGATAGCGCAACAATGCAAAAAC 80002 Query 69093 ATCTGCCAATCCCTGAACCCCAATACCGATAGGTCTATGTCTCTTATTTGAACTTTCAGC 69152 ||| |||| || ||||| ||||| || || || || ||||| ||| || || ||| Sbjct 80003 ATCGGCCAGACCTTGAACTCCAATCCCAATTGGCCTGTGTCTTAAATTGGATGTTCTAGC 80062 Query 69153 TTCTGGAATAGGATAATAATTAATATCTATAATTTTATTAAGATT 69197 ||| || | ||||||| ||| ||||| ||||| || |||||||| Sbjct 80063 TTCCGGTAATGGATAATGATTTATATCAATAATCTTGTTAAGATT 80107 >seq2867 Length=150518 Score = 111 bits (122), Expect = 2e-19 Identities = 195/281 (69%), Gaps = 6/281 (2%) Strand=Plus/Plus Query 39807 CCCAATCAGCTTTCTTCTTTACACAAGGCATTGTTTCTATAGCATTAAAGAGATAATGTT 39866 |||| | || || |||| || | ||||| ||||| || |||||||| | | | | Sbjct 86868 CCCATTGTGCCTTTTTCTGAACTCGTGGCATAGTTTCGATGGCATTAAATAATTTACTCT 86927 Query 39867 TTTCATCACTATCTTTAACATATGTATCTATTAACAGACTATACATTTCTGAATGGATGT 39926 || || |||| ||||||| | ||| ||||| || || |||||||||||| ||| Sbjct 86928 TTGTTTCTGTATCAATAACATAAGAATCGATTAATAGCGAATGCATTTCTGAATGAATGC 86987 Query 39927 TTTCAATCGCCATCTGAAATCCGTAAAA-ACATCTTGCTTCAGTAATTTGTACCTCTGAA 39985 ||||||| | || ||||| | |||||| | || ||||||| ||||| || ||| | Sbjct 86988 TTTCAATGGTAATTTGAAAACTGTAAAATGCCTC-AGCTTCAGGAATTTTGACTTCTTGA 87046 Query 39986 CAAAATCTTTCCGCCAAATTTTCATTCACTATTCCATCACTAGCGGCAAAAAATGCCAAT 40045 | ||||| || | | ||||||||| | || |||||||| || || |||| | | Sbjct 87047 AAGAATCTCTCGACAAGATTTTCATTGTCAATCCCATCACTGGCAGCGAAAAGGGTAAGG 87106 Query 40046 ACATGTTTAATAAAATATTTTTCATCGGGTGTCAATTTATT 40086 || || |||| |||||| ||||| ||||| || ||| Sbjct 87107 ACGTGAGTAATGAAATATCATTCAT----TGTCATTTAATT 87143 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 686799049146480