Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schmidtea_20mediterranea_20[genbank_20GCA_5F000691995.1_202014-05- 30] 12,782 sequences; 700,725,851 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq2828 127 2e-24 >seq2828 Length=37213 Score = 127 bits (140), Expect = 2e-24 Identities = 417/640 (65%), Gaps = 56/640 (9%) Strand=Plus/Minus Query 43715 ATTCAATATCATGACATATGGCAAATGTACAAAAAAGCACAGGCGTCATTTTGGACAGCA 43774 || |||||| | || |||||| |||||| || ||||| | | ||||||||||| | | Sbjct 29320 ATACAATATGAAGATATATGGGAAATGTTTAATAAAGCTCGATCTTCATTTTGGACTGTA 29261 Query 43775 GAAGAAGTTGATTTGACTAAAGACTTAGCACATTGGATTGCATTAAAACCACAAGAAAAA 43834 | |||||| |||| | ||||| || || || |||| | | || | ||| Sbjct 29260 AATGAAGTTAATTTATCAAAAGATTTTGCTCACTGGAAAAAAATGAATGACGATGAACGG 29201 Query 43835 CATTTTATATCTTTGGTTTTGGCGTTTTTTGCTGCGAGCGACGGGATAGTCAATGAAAAT 43894 |||| || || ||| | || ||||||||||| || || || || |||||||||||| Sbjct 29200 TATTTCATTACTCACGTTCTTGCATTTTTTGCTGCCAGTGATGGAATTGTCAATGAAAAT 29141 Query 43895 TTGGTTAGTCGGTTTGCGCAAGAAGTTCAATTACCAGAAGCACGATGT-TTTTATGGGTT 43953 | || | || |||||||| || | || ||||| || | ||||| | || Sbjct 29140 CTCGTCGAAAGATTCATTCAAGAAGTGAAAATTCCCGAAGCT-GAGGCATTTTACAGTTT 29082 Query 43954 TCAAATTGCCATAGAAAATATTCATTCGGAAATGTAC-------------AGTCTTCTGA 44000 ||||||||| || ||||| |||||||| |||||||| | |||| || Sbjct 29081 TCAAATTGCAATTGAAAACATTCATTCAGAAATGTATTCTCTATTAATCGATTCTTATGT 29022 Query 44001 TA--GATAC---------GTA--------------CATCAAAGATGGGCACGAGAA---G 44032 || ||||| ||| ||| ||| || | ||| || | Sbjct 29021 TACTGATACAGAAACAAAGTAATAGTTTTCTTTGTCATAAAAAATTATCTCGAAAAAAGG 28962 Query 44033 CATCGATTGTTTAATGCGATAGAAACAGTACC-TGCGATTAAACATAAAGCAGACTGGGC 44091 || ||| |||||||| || ||||| | || |||| | | | | ||||| | ||||| Sbjct 28961 AATAAATTATTTAATGCCATCGAAACTATGCCATGCGTTCAGAAA-AAAGCTCAATGGGC 28903 Query 44092 CCTTAAATGGATAA---ATTCAAATGATTCTTTTGGAGAACGACTTGTCGCGTTTGCAGT 44148 | ||||| | || ||| |||||||| || |||| || ||||| | Sbjct 28902 ATTGCGTTGGATTAGCGATAAAAAATCCACTTTTGGAACTAGAGTTGTTGCATTTGCTGC 28843 Query 44149 TGTGGAAGGCATTTTCTTTTCAG-GATCGTTT-GCGGCCATATTTTGGTTAAAGAAACGA 44206 ||| || || || || |||||| | | |||| || | ||||||||| | || || || Sbjct 28842 TGTCGAGGGAATATT--TTTCAGTGGTAGTTTTGCATCGATATTTTGGCTTAAAAAGCGT 28785 Query 44207 GGTTTGATGCCTGGGTTGACGTTTTCA--AATGAGTTAATAAGTCGTGATGAAGGCTTAC 44264 || || ||||| || || | |||| || || || ||||| || || |||||||| | | Sbjct 28784 GGATTAATGCCCGGATT-ATGTTT-CAGCAACGAATTAATTAGCCGAGATGAAGGACTTC 28727 Query 44265 ATTGCGATTTTGCTTGCTTGTTACTTGGATATCTAGGAGA 44304 |||||||||||||||| ||| | || |||| ||| ||| Sbjct 28726 ATTGCGATTTTGCTTGTTTGATGTTTAAATATTTAGTAGA 28687 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397394084055910