Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schmidtea_20mediterranea_20[genbank_20GCA_5F000691995.1_202014-05- 30] 12,782 sequences; 700,725,851 total letters Query= NC_027923.1 Length=132831 Score E Sequences producing significant alignments: (Bits) Value seq62 107 2e-18 seq10343 98.7 8e-16 seq7457 86.0 5e-12 seq12383 84.2 2e-11 seq4271 84.2 2e-11 seq4061 84.2 2e-11 seq6538 82.4 6e-11 >seq62 Length=83120 Score = 107 bits (118), Expect = 2e-18 Identities = 152/211 (72%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 27038 TACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTC-GCTCATGTTGCGCTCGTCTT 27096 ||| | |||||| || || ||||| ||||||||||| || | | | ||| || |||||| Sbjct 2382 TACTAGATGTAATGTGGATTCTTTCTGAATATTGTAATCAGATAAAGTT-CGTCCGTCTT 2324 Query 27097 CGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGG 27156 | | ||||| ||||| |||| | || || ||||| || || | || ||||| || Sbjct 2323 CTAATTGTTTTCCGGCAAAAATCAATCGTTGCTGATCAGGAGGAATGCCTTCTTTGTCTT 2264 Query 27157 CGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATT 27216 || ||| ||| | |||| | || || | | ||||||||| || ||||| | || Sbjct 2263 GAATTTTGGCTTTTACATTTTCAATTGTATCGGAAGATTCAACTTCAAGGGTTATTGTTT 2204 Query 27217 TGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 | ||||| ||||| |||||||| |||||||| Sbjct 2203 TACCCGTAAGAGTCTTCACAAAAATTTGCAT 2173 >seq10343 Length=31290 Score = 98.7 bits (108), Expect = 8e-16 Identities = 160/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 27021 CCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTC-GCT 27079 ||||| | || || || |||||||| || || || |||||||||||||| || || | | Sbjct 25786 CCTCCTCTTAATCGTAAAACCAAATGCAATGTTGACTCTTTTTGAATATTATAATCTGAT 25727 Query 27080 CATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGG 27139 | | | || | ||||| | || || || || |||| | ||||||||| || || || Sbjct 25726 AAAG-TACGACCATCTTCCAATTGCTTGCCAGCAAAAATCAAACGCTGTTGGTCTGGTGG 25668 Query 27140 CACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAAC 27199 | || |||||||| ||||| ||| | |||| | || || | | ||||| Sbjct 25667 AATTCCTTCTTTATCTTGAATCTTTGATTTAACATTTTCAATAGAATCAGATGACTCAAC 25608 Query 27200 TTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 ||| || ||||||| ||| || || | ||||| |||||||| ||||| Sbjct 25607 TTCAAGTGTTATAGTTTTCCCTGTTAATGTTTTAACAAAGATCTGCAT 25560 >seq7457 Length=83733 Score = 86.0 bits (94), Expect = 5e-12 Identities = 142/205 (69%), Gaps = 0/205 (0%) Strand=Plus/Minus Query 27039 ACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCG 27098 |||||||| | ||||| |||||||||||||| || || || | || | ||||| Sbjct 44489 ACCAAATGGAGTGTAGATTCTTTTTGAATATTATAATCAGACAAAGTACGTCCATCTTCT 44430 Query 27099 AGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCG 27158 | ||||| | || ||||||| | |||||||| || || | | |||||||| Sbjct 44429 AATTGTTTGCTAGCAAAAATGAGTCTTTGTTGATCGGGAGGAAATCATTCTTTATCTTGA 44370 Query 27159 ATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTG 27218 ||||| ||||| |||| | ||||| | | |||| || || || || | ||| Sbjct 44369 ATCTTTGCTTTCACCTTTTCAATGGTGTCACCTGATGCAACCTCGAGTGTAATCGTTTTA 44310 Query 27219 CCCGTCAGAGTTTTCACAAAGATTT 27243 || |||| |||||||||||| |||| Sbjct 44309 CCGGTCAAAGTTTTCACAAATATTT 44285 >seq12383 Length=19971 Score = 84.2 bits (92), Expect = 2e-11 Identities = 141/204 (69%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 27040 CCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCGA 27099 ||||||| | ||||| || ||||||||||| || || || | || | ||||| | Sbjct 8182 CCAAATGGAGTGTAGATTCCTTTTGAATATTATAATCAGACAAAGTACGTCCATCTTCTA 8241 Query 27100 GCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGA 27159 ||||| || || ||||||| | |||||||| || || | || |||||||| | Sbjct 8242 ATTGTTTGCCAGCAAAAATGAGTCTTTGTTGATCGGGAGGAAATCCTTCTTTATCTTGAA 8301 Query 27160 TCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGC 27219 |||| ||||| |||| | ||||| | | |||| || || || || | ||| | Sbjct 8302 TCTTTGCTTTCACCTTTTCAATGGTGTCACCTGATGCAACCTCGAGTGTAATCGTTTTAC 8361 Query 27220 CCGTCAGAGTTTTCACAAAGATTT 27243 | ||| |||||||||||| |||| Sbjct 8362 CGTTCAAAGTTTTCACAAATATTT 8385 >seq4271 Length=23865 Score = 84.2 bits (92), Expect = 2e-11 Identities = 141/204 (69%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 27040 CCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCGA 27099 ||||||| | ||||| || ||||||||||| || || || | | | | | ||| | Sbjct 1771 CCAAATGGAGTGTAGATTCCTTTTGAATATTATAATCAGACAAGGTATGTCCATTTTCTA 1830 Query 27100 GCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGA 27159 | ||||| || || ||||||| | |||||||| || | || |||||||| || Sbjct 1831 GTTGTTTGCCAGCAAAAATGAGTCTTTGTTGATCAAAAGGAATTCCTTCTTTATCTTGGA 1890 Query 27160 TCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGC 27219 |||| ||||| |||| | ||||| | | |||| || || || || | ||| | Sbjct 1891 TCTTTGCTTTCACCCTTTCAATGGTGTCACCTGATGCAACCTCGAGTGTAATCGTTTTAC 1950 Query 27220 CCGTCAGAGTTTTCACAAAGATTT 27243 | |||| |||||||||||| |||| Sbjct 1951 CGGTCAAAGTTTTCACAAATATTT 1974 >seq4061 Length=86116 Score = 84.2 bits (92), Expect = 2e-11 Identities = 141/204 (69%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 27040 CCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCGA 27099 ||||||| | ||||| || ||||||||||| || || || | || | ||||| | Sbjct 51721 CCAAATGGAGTGTAGATTCCTTTTGAATATTATAATCAGACAAAGTACGTCCATCTTCTA 51780 Query 27100 GCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGA 27159 ||||| || || ||||||| | |||||||| || || | || |||||||| | Sbjct 51781 ATTGTTTGCCAGCAAAAATGAGTCTTTGTTGATCGGGAGGAAATCCTTCTTTATCTTGAA 51840 Query 27160 TCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGC 27219 |||| ||||| |||| | ||||| | | |||| || || || || | ||| | Sbjct 51841 TCTTTGCTTTCACCTTTTCAATGGTGTCACCTGATGCAACCTCGAGTGTAATCGTTTTAC 51900 Query 27220 CCGTCAGAGTTTTCACAAAGATTT 27243 | ||| |||||||||||| |||| Sbjct 51901 CGTTCAAAGTTTTCACAAATATTT 51924 >seq6538 Length=69723 Score = 82.4 bits (90), Expect = 6e-11 Identities = 106/144 (74%), Gaps = 2/144 (1%) Strand=Plus/Plus Query 27106 TACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGA-TCTTG 27164 |||||| | ||||| | |||||||| || || || || ||||| || || |||| Sbjct 50460 TACCGGTACAGATGAGTCTATGTTGATCTGGAGGAACTCCTTCTTTG-CGTTGAATCTTT 50518 Query 27165 TTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTC 27224 ||| | |||| | |||||| | | ||||||||| || || || | |||||| ||| Sbjct 50519 ACTTTTACACTTTCAATAGTGTCACTTGGTTCAACTTCAAGTGTAATGGTTTTGCCAGTC 50578 Query 27225 AGAGTTTTCACAAAGATTTGCATA 27248 | |||||||||||| ||||||||| Sbjct 50579 AAAGTTTTCACAAATATTTGCATA 50602 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 424868203453584