Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schmidtea_20mediterranea_20[genbank_20GCA_5F000691995.1_202014-05- 30] 12,782 sequences; 700,725,851 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq4321 89.7 6e-13 seq2828 87.8 2e-12 seq4842 86.0 8e-12 >seq4321 Length=90450 Score = 89.7 bits (98), Expect = 6e-13 Identities = 138/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 111221 ACATACTTTGGAAGGGCGATTGATGCCAAATTGCAAACAGCCGTCTCATCCTTATCTGTG 111280 ||| | |||||||| | ||| || ||||||||||||||||| | ||||| | | Sbjct 81339 ACAAATTTTGGAAGAGAGATCGAAGCCAAATTGCAAACAGCTATTTCATCAGGAGAACTA 81398 Query 111281 TACTCTAAAATTTCTGTACATAAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGGTTA 111340 || |||| ||||||||| || || ||| | || ||||| || |||| || || || Sbjct 81399 TATTCTACAATTTCTGTGCACAAATTGCTGCATTTGATCGTTCCTAAATGCTGATGATTT 81458 Query 111341 CTCTTCTTGTTGCACGCATCCTTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTGTGAT 111400 ||| ||||| || |||||||| ||||| || || || || || || | ||||| Sbjct 81459 GACTTGGCATTGCAGGCGTCCTTGTATAGCATATAAGGAGTTCCGGTTTCGATTTGTGAA 81518 Query 111401 TTGAGAATAGCCTTCCA 111417 | ||| || | ||||| Sbjct 81519 TCGAGGATTTCTTTCCA 81535 >seq2828 Length=37213 Score = 87.8 bits (96), Expect = 2e-12 Identities = 124/172 (72%), Gaps = 2/172 (1%) Strand=Plus/Plus Query 122370 ATAGTCCCCGACCCGCTTCTCAAAGAAGTTGGTCTTCCCATCAAGGCTAATGTTTTCCAT 122429 ||| || ||||| || |||||||||||||| || |||||||| | || ||| || ||||| Sbjct 28376 ATATTCACCGACTCGTTTCTCAAAGAAGTTAGTTTTCCCATCGATGCAAATATTATCCAT 28435 Query 122430 AAAGTCAAATGGATTCTTCGCGTTCCA-AATGGGTGGCACCCCAACTTGTTTGAGGAGAC 122488 || || || || |||| | |||||| || || || ||||| || || || | Sbjct 28436 GAAATCCAACGGGTTCTCTGTGTTCCAGAACTTGTCACAGCCCAA-TTCAACCAGCAGCC 28494 Query 122489 GATCCGACACATACTCAATGTACTCGGACATCTTCTCAGAGTTCATACCGAT 122540 | || | |||| | ||||| ||||| ||||| |||| |||||| || || Sbjct 28495 GGTCGGCCACAAATTCAATATACTCACACATCGATTCAGCGTTCATGCCAAT 28546 >seq4842 Length=204163 Score = 86.0 bits (94), Expect = 8e-12 Identities = 200/294 (68%), Gaps = 11/294 (4%) Strand=Plus/Plus Query 11446 CTTGC-GATCAAAACGACCCGGGCGAAGGAGGGCGTCATCAAGGATATCCACGCGATTAG 11504 ||||| | |||||||| ||||| ||||| | || | || | ||||| |||||| | Sbjct 30276 CTTGCCGGTCAAAACGCCCCGGACGAAGCAACGCTTGGTCCAAAATATCAGGGCGATTGG 30335 Query 11505 TGGCCGCAATAAC---CACAATGCCAGTCTCATTGTCAAAGCCATCCATCTCGGTGAGTA 11561 | || || | || |||| || | || | || |||||||||||||| || | | Sbjct 30336 TTGCGGCCACGACGATCACACTGGC-GT-TGGTT-TCAAAGCCATCCATTTCAACCAACA 30392 Query 11562 ATTGATTAATTGTTTGTTCTCTCTCATCATTTGCTGGCATACCA--CCAGCACTGCGTTG 11619 |||||| | |||||||| | ||||||||| | | ||| || || | ||| || Sbjct 30393 TTTGATTCAGGGTTTGTTCGCGCTCATCATTACCA--CCGCCCAGGCCGGCTCCGCGCTG 30450 Query 11620 CTTGCCCACCGCATCAATCTCATCAATGAAGACAATACATGGTTGATTTTCGCGGGCGAT 11679 |||||||| ||||| ||||||||||| | ||| || ||| ||| | |||| | Sbjct 30451 GCGACCCACCGCGTCAATTTCATCAATGAAAATAATGCAAGGTGCATTCTTTTTGGCGTT 30510 Query 11680 TTCAAAGAGATCGCGAACCCTTTTGGCACCCACACCAACAAACATCTCCACAAA 11733 ||||| | ||| || |||| || || ||||| || ||||| || || || Sbjct 30511 ATCAAACATATCACGCACCCGAGACGCGCCTACACCCACGAACATTTCAACGAA 30564 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 627931656187200