Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Schmidtea_20mediterranea_20[genbank_20GCA_5F000691995.1_202014-05-
30] 12,782 sequences; 700,725,851 total letters
Query= NC_029304.1
Length=111246
Score E
Sequences producing significant alignments: (Bits) Value
seq62 116 3e-21
seq10343 93.3 3e-14
seq9680 91.5 1e-13
>seq62
Length=83120
Score = 116 bits (128), Expect = 3e-21
Identities = 166/232 (72%), Gaps = 4/232 (2%)
Strand=Plus/Plus
Query 27787 AAAATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGC 27846
|| ||||||||||||||||| |||||||| || ||| || || |||| || |||
Sbjct 2170 AACATGCAAATTTTTGTGAAGACTCTTACGGGTAAAACAATAACCCTTGAAGTTGAATCT 2229
Query 27847 ACCGA--CGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGG 27904
|||| | || | ||| || ||| ||||| ||||||||||| |||| |
Sbjct 2230 TCCGATACAATTGAAAAT--GTAAAAGCCAAAATTCAAGACAAAGAAGGCATTCCTCCTG 2287
Query 27905 AGCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATT 27964
| |||||||| || |||||||||||||||||||| || |||| ||| | || || ||||
Sbjct 2288 ATCAGCAACGATTGATTTTTGCCGGAAAACAATTAGAAGACGGACGAACTTTATCTGATT 2347
Query 27965 ACAACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016
|||| || || ||||| ||| || ||| | || | || | ||||| ||
Sbjct 2348 ACAATATTCAGAAAGAATCCACATTACATCTAGTACTTCGACTTCGTGGTGG 2399
>seq10343
Length=31290
Score = 93.3 bits (102), Expect = 3e-14
Identities = 156/224 (70%), Gaps = 4/224 (2%)
Strand=Plus/Plus
Query 27786 TAAAATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAG 27845
||||||||| || ||||| ||||| | || |||||| ||| ||| |||| || ||
Sbjct 25556 TAAAATGCAGATCTTTGTTAAAACATTAACAGGGAAAACTATAACACTTGAAGTTGAGTC 25615
Query 27846 CACCGA--CGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATG 27903
| || | || | ||| || ||| ||| || || |||||||| ||||
Sbjct 25616 ATCTGATTCTATTGAAAAT--GTTAAATCAAAGATTCAAGATAAAGAAGGAATTCCACCA 25673
Query 27904 GAGCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGAT 27963
|| || || || || |||||||| || || |||||||| || | || | || || |||
Sbjct 25674 GACCAACAGCGTTTGATTTTTGCTGGCAAGCAATTGGAAGATGGTCGTACTTTATCAGAT 25733
Query 27964 TACAACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTT 28007
|| || || ||||||||| || |||||||||||||| || ||
Sbjct 25734 TATAATATTCAAAAAGAGTCAACATTGCATTTGGTTTTACGATT 25777
>seq9680
Length=90248
Score = 91.5 bits (100), Expect = 1e-13
Identities = 151/216 (70%), Gaps = 4/216 (2%)
Strand=Plus/Minus
Query 27785 GTAAAATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAA 27844
||| |||||| |||||||| ||||| || || || ||| |||||| |||| || ||
Sbjct 41948 GTAGAATGCAGATTTTTGTTAAAACCCTAACGGGTAAAACAATTACACTTGAAGTTGAGT 41889
Query 27845 GCACCGA--CGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGAT 27902
| || | || | ||| || ||| ||||| ||||| ||||| ||||
Sbjct 41888 CTTCAGATACCATTGAAAAT--GTTAAAGCCAAAATTCAAGACAAGGAAGGCATTCCACC 41831
Query 27903 GGAGCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGA 27962
|| || || | |||| || || ||||||||||| || || | || | ||||| ||
Sbjct 41830 AGATCAACAGAGACTAATCTTCGCTGGAAAACAATTAGAAGATGGTCGAACATTGTCTGA 41771
Query 27963 TTACAACATCCAAAAAGAGAGCACTTTGCATTTGGT 27998
||||||||||||||||| || ||| | ||||||||
Sbjct 41770 CTACAACATCCAAAAAGAAAGTACTCTCCATTTGGT 41735
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 355806963532914
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |