Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schmidtea_20mediterranea_20[genbank_20GCA_5F000691995.1_202014-05- 30] 12,782 sequences; 700,725,851 total letters Query= NC_029304.1 Length=111246 Score E Sequences producing significant alignments: (Bits) Value seq62 116 3e-21 seq10343 93.3 3e-14 seq9680 91.5 1e-13 >seq62 Length=83120 Score = 116 bits (128), Expect = 3e-21 Identities = 166/232 (72%), Gaps = 4/232 (2%) Strand=Plus/Plus Query 27787 AAAATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGC 27846 || ||||||||||||||||| |||||||| || ||| || || |||| || ||| Sbjct 2170 AACATGCAAATTTTTGTGAAGACTCTTACGGGTAAAACAATAACCCTTGAAGTTGAATCT 2229 Query 27847 ACCGA--CGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGG 27904 |||| | || | ||| || ||| ||||| ||||||||||| |||| | Sbjct 2230 TCCGATACAATTGAAAAT--GTAAAAGCCAAAATTCAAGACAAAGAAGGCATTCCTCCTG 2287 Query 27905 AGCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATT 27964 | |||||||| || |||||||||||||||||||| || |||| ||| | || || |||| Sbjct 2288 ATCAGCAACGATTGATTTTTGCCGGAAAACAATTAGAAGACGGACGAACTTTATCTGATT 2347 Query 27965 ACAACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 |||| || || ||||| ||| || ||| | || | || | ||||| || Sbjct 2348 ACAATATTCAGAAAGAATCCACATTACATCTAGTACTTCGACTTCGTGGTGG 2399 >seq10343 Length=31290 Score = 93.3 bits (102), Expect = 3e-14 Identities = 156/224 (70%), Gaps = 4/224 (2%) Strand=Plus/Plus Query 27786 TAAAATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAG 27845 ||||||||| || ||||| ||||| | || |||||| ||| ||| |||| || || Sbjct 25556 TAAAATGCAGATCTTTGTTAAAACATTAACAGGGAAAACTATAACACTTGAAGTTGAGTC 25615 Query 27846 CACCGA--CGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATG 27903 | || | || | ||| || ||| ||| || || |||||||| |||| Sbjct 25616 ATCTGATTCTATTGAAAAT--GTTAAATCAAAGATTCAAGATAAAGAAGGAATTCCACCA 25673 Query 27904 GAGCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGAT 27963 || || || || || |||||||| || || |||||||| || | || | || || ||| Sbjct 25674 GACCAACAGCGTTTGATTTTTGCTGGCAAGCAATTGGAAGATGGTCGTACTTTATCAGAT 25733 Query 27964 TACAACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTT 28007 || || || ||||||||| || |||||||||||||| || || Sbjct 25734 TATAATATTCAAAAAGAGTCAACATTGCATTTGGTTTTACGATT 25777 >seq9680 Length=90248 Score = 91.5 bits (100), Expect = 1e-13 Identities = 151/216 (70%), Gaps = 4/216 (2%) Strand=Plus/Minus Query 27785 GTAAAATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAA 27844 ||| |||||| |||||||| ||||| || || || ||| |||||| |||| || || Sbjct 41948 GTAGAATGCAGATTTTTGTTAAAACCCTAACGGGTAAAACAATTACACTTGAAGTTGAGT 41889 Query 27845 GCACCGA--CGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGAT 27902 | || | || | ||| || ||| ||||| ||||| ||||| |||| Sbjct 41888 CTTCAGATACCATTGAAAAT--GTTAAAGCCAAAATTCAAGACAAGGAAGGCATTCCACC 41831 Query 27903 GGAGCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGA 27962 || || || | |||| || || ||||||||||| || || | || | ||||| || Sbjct 41830 AGATCAACAGAGACTAATCTTCGCTGGAAAACAATTAGAAGATGGTCGAACATTGTCTGA 41771 Query 27963 TTACAACATCCAAAAAGAGAGCACTTTGCATTTGGT 27998 ||||||||||||||||| || ||| | |||||||| Sbjct 41770 CTACAACATCCAAAAAGAAAGTACTCTCCATTTGGT 41735 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 355806963532914