Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schmidtea_20mediterranea_20[genbank_20GCA_5F000691995.1_202014-05- 30] 12,782 sequences; 700,725,851 total letters Query= NC_029692.1 Length=362276 Score E Sequences producing significant alignments: (Bits) Value seq10343 120 7e-22 seq6040 120 7e-22 seq9680 114 3e-20 seq2208 105 2e-17 seq2736 89.7 1e-12 seq4271 84.2 5e-11 seq3598 84.2 5e-11 >seq10343 Length=31290 Score = 120 bits (132), Expect = 7e-22 Identities = 147/201 (73%), Gaps = 0/201 (0%) Strand=Plus/Minus Query 210918 GTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTGCTTGCCT 210977 || ||||||||||| || |||||||| | | || | |||||||||| |||||||| Sbjct 25756 GTTGACTCTTTTTGAATATTATAATCTGATAAAGTACGACCATCTTCCAATTGCTTGCCA 25697 Query 210978 GCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGTTTC 211037 || || || | || |||||||| || |||| |||||| || || || |||||| ||| Sbjct 25696 GCAAAAATCAAACGCTGTTGGTCTGGTGGAATTCCTTCTTTATCTTGAATCTTTGATTTA 25637 Query 211038 ACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTGAGAGTC 211097 || ||||| || | ||||| ||||| || || || || || || || || | || Sbjct 25636 ACATTTTCAATAGAATCAGATGACTCAACTTCAAGTGTTATAGTTTTCCCTGTTAATGTT 25577 Query 211098 TTTACAAACACCTGCATTTTA 211118 || ||||| | |||||||||| Sbjct 25576 TTAACAAAGATCTGCATTTTA 25556 >seq6040 Length=121922 Score = 120 bits (132), Expect = 7e-22 Identities = 145/195 (74%), Gaps = 2/195 (1%) Strand=Plus/Plus Query 210912 TGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTGC 210971 || || || || |||||||| ||||||||||| | | || | ||||||||| | || Sbjct 23268 TGGAGTGTAGATTCTTTTTGAATGTTATAATCAGACAAAGTACGTCCATCTTCTAATTGT 23327 Query 210972 TTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTT 211031 ||||| || || || || | |||||| | ||||||| ||||| || || || |||||| Sbjct 23328 TTGCCAGCAAAAATGAGTCTTTGTTGATAGGGAGGAAATCCTTTTTTATCTTGAATCTTT 23387 Query 211032 TGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGT- 211090 |||||| ||||| ||||||||| | |||||||||| || ||||| ||| |||| Sbjct 23388 GCTTTCACCTTTTCAATGGTGTCACCTGATGCAACCTCGAGTGTAATCGT-TTTACCGTC 23446 Query 211091 GAGAGTCTTTACAAA 211105 | ||| || ||||| Sbjct 23447 CAAAGTTTTCACAAA 23461 >seq9680 Length=90248 Score = 114 bits (126), Expect = 3e-20 Identities = 159/223 (71%), Gaps = 0/223 (0%) Strand=Plus/Plus Query 210896 AAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCT 210955 |||||| || || | || ||||| |||||||||||||| || || | | || | Sbjct 41725 AAGTCTAAGTACCAAATGGAGAGTACTTTCTTTTTGGATGTTGTAGTCAGACAATGTTCG 41784 Query 210956 TCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTC 211015 |||||||| | || || || |||||||| || | ||||| || || |||| ||||| Sbjct 41785 ACCATCTTCTAATTGTTTTCCAGCGAAGATTAGTCTCTGTTGATCTGGTGGAATGCCTTC 41844 Query 211016 CTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGT 211075 |||||| || || || ||| || ||||| ||||| || || ||||| || || || Sbjct 41845 CTTGTCTTGAATTTTGGCTTTAACATTTTCAATGGTATCTGAAGACTCAACTTCAAGTGT 41904 Query 211076 GATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCATTTTA 211118 || || || ||||| || || || ||||| | ||||||| || Sbjct 41905 AATTGTTTTACCCGTTAGGGTTTTAACAAAAATCTGCATTCTA 41947 >seq2208 Length=35245 Score = 105 bits (116), Expect = 2e-17 Identities = 140/192 (73%), Gaps = 3/192 (2%) Strand=Plus/Plus Query 210916 GAGTG--GACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTGCTT 210973 ||||| || || ||||| ||||||||||| | | |||| | |||||| | || || Sbjct 34809 GAGTGCAGATTCCTTTTGAATGTTATAATCAGACAAAGTCCGTT-ATCTTCTAATTGTTT 34867 Query 210974 GCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTG 211033 ||| || || || || | |||||| || ||||||| ||||| || || || |||||| Sbjct 34868 GCCAGCAAAAATTAGTCTTTGTTGATCGGGAGGAAATCCTTATTTATCTTGAATCTTTGC 34927 Query 211034 TTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTGAG 211093 ||||| ||||| ||||||||| |||||||||||| || |||| || || | | Sbjct 34928 CTTCACCTTTTCAATGGTGTCACCCGATTCAACCTCGAGTGTAATCGATTTACCGTTCAA 34987 Query 211094 AGTCTTTACAAA 211105 ||| || ||||| Sbjct 34988 AGTTTTCACAAA 34999 >seq2736 Length=84568 Score = 89.7 bits (98), Expect = 1e-12 Identities = 109/149 (73%), Gaps = 0/149 (0%) Strand=Plus/Plus Query 210957 CCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCC 211016 ||||| | ||||| || || || ||||| || | |||||| || ||||||||| |||| Sbjct 622 CCATCATTTAGCTGTTTACCGGCAAAGATGAGTCTTTGTTGATCTGGAGGAACTTCTTCT 681 Query 211017 TTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTG 211076 |||| || |||||| ||| || |||| || |||||| |||||||||||| || Sbjct 682 TTGTATTGAATCTTTACTTTTACACTTTCAATAGTGTCACTTGGTTCAACCTCGAGCGTA 741 Query 211077 ATCGTCTTTCCCGTGAGAGTCTTTACAAA 211105 || || || || || | || || ||||| Sbjct 742 ATGGTTTTGCCAGTCAACGTTTTCACAAA 770 >seq4271 Length=23865 Score = 84.2 bits (92), Expect = 5e-11 Identities = 112/156 (72%), Gaps = 0/156 (0%) Strand=Plus/Plus Query 210959 ATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTT 211018 ||| | || ||| || || || ||||||| | |||||| | |||||||||||||| || Sbjct 1595 ATCATTCAACTGTTTACCGGCCCAGATAAGTCTTTGTTGAACTGGAGGAACTCCTTCTTT 1654 Query 211019 GTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGAT 211078 || || |||||| ||| || |||| || |||||| ||||||||| || || || Sbjct 1655 GTGTTGAATCTTTACTTTTACACTTTCAATAGTGTCACTTGGTTCAACCTCAAGCGTAAT 1714 Query 211079 CGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || || || || | ||| || || || | ||||| Sbjct 1715 GGTTTTGCCAGTCAAAGTTTTCACGAATATTTGCAT 1750 >seq3598 Length=45943 Score = 84.2 bits (92), Expect = 5e-11 Identities = 108/149 (72%), Gaps = 0/149 (0%) Strand=Plus/Plus Query 210957 CCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCC 211016 ||||| | || ||| || || || ||||| || | |||||| || |||||||||||||| Sbjct 12825 CCATCATTCAACTGTTTACCGGCAAAGATGAGTCTTTGTTGATCTGGAGGAACTCCTTCT 12884 Query 211017 TTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTG 211076 ||| || |||||| ||| || |||| || |||||| |||||| ||||| || Sbjct 12885 TTGCATTGAATCTTTACTTTTACACTTTCAATAGTGTCACTTAGTTCAACTTCGAGCGTA 12944 Query 211077 ATCGTCTTTCCCGTGAGAGTCTTTACAAA 211105 || || || || || | || || ||||| Sbjct 12945 ATGGTTTTGCCAGTCAACGTTTTCACAAA 12973 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1158962166401430