Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Schmidtea_20mediterranea_20[genbank_20GCA_5F000691995.1_202014-05-
30] 12,782 sequences; 700,725,851 total letters
Query= NC_029997.1
Length=105667
Score E
Sequences producing significant alignments: (Bits) Value
seq10343 170 1e-37
seq62 154 1e-32
seq9680 131 1e-25
seq7081 114 9e-21
seq3336 113 3e-20
seq4043 86.0 4e-12
>seq10343
Length=31290
Score = 170 bits (188), Expect = 1e-37
Identities = 179/233 (77%), Gaps = 2/233 (1%)
Strand=Plus/Plus
Query 23606 TTAAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACT 23665
||||||||||||| || |||||||| | || || ||||| || || || |||||||| |
Sbjct 25555 TTAAAATGCAGATCTTTGTTAAAACATTAACAGGGAAAACTATAACACTTGAAGTTGAGT 25614
Query 23666 CCACGGACACTGTTG-AAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCA 23724
| | || || ||| |||| ||||| | ||| ||| || |||||||| | || |||
Sbjct 25615 CATCTGATTCTATTGAAAATGTTAAATC-AAAGATTCAAGATAAAGAAGGAATTCCACCA 25673
Query 23725 GATCAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGAT 23784
|| ||||||||||| || ||||| ||||| ||| ||||||| | || |||||| |||
Sbjct 25674 GACCAACAGCGTTTGATTTTTGCTGGCAAGCAATTGGAAGATGGTCGTACTTTATCAGAT 25733
Query 23785 TACAACATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGG 23837
|| || || ||||||||||| ||||| ||||| |||||| | || |||||||
Sbjct 25734 TATAATATTCAAAAAGAGTCAACATTGCATTTGGTTTTACGATTAAGAGGAGG 25786
>seq62
Length=83120
Score = 154 bits (170), Expect = 1e-32
Identities = 166/219 (76%), Gaps = 2/219 (1%)
Strand=Plus/Plus
Query 23603 TACTTAAAA--TGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGT 23660
|| |||||| |||| ||||| || || || || ||||| ||||| || || || |||||
Sbjct 2163 TATTTAAAACATGCAAATTTTTGTGAAGACTCTTACGGGTAAAACAATAACCCTTGAAGT 2222
Query 23661 TGACTCCACGGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACC 23720
||| || | || || |||||| ||||| |||||| ||||||||||| | ||
Sbjct 2223 TGAATCTTCCGATACAATTGAAAATGTAAAAGCCAAAATTCAAGACAAAGAAGGCATTCC 2282
Query 23721 GCCAGATCAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGG 23780
|| ||||| || || || || |||||||| |||||| | ||||||| ||| ||||||
Sbjct 2283 TCCTGATCAGCAACGATTGATTTTTGCCGGAAAACAATTAGAAGACGGACGAACTTTATC 2342
Query 23781 CGATTACAACATACAAAAAGAGTCCACATTACATTTAGT 23819
|||||||| || || ||||| |||||||||||| ||||
Sbjct 2343 TGATTACAATATTCAGAAAGAATCCACATTACATCTAGT 2381
>seq9680
Length=90248
Score = 131 bits (144), Expect = 1e-25
Identities = 153/204 (75%), Gaps = 2/204 (1%)
Strand=Plus/Minus
Query 23599 TAATTACTTAAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAA 23658
||||| || |||||||||||| ||||||||||| ||||| ||||| || || || |||
Sbjct 41955 TAATTTTGTAGAATGCAGATTTTTGTTAAAACCCTAACGGGTAAAACAATTACACTTGAA 41896
Query 23659 GTTGACTCCACGGACACTGTTGAAA-TATTAAAACAAAAAATTGCTGACAAAGAAGGTGT 23717
||||| || | || || |||||| | ||||| | |||| || ||||| ||||| |
Sbjct 41895 GTTGAGTCTTCAGATACCATTGAAAATGTTAAAGCCAAAA-TTCAAGACAAGGAAGGCAT 41837
Query 23718 ACCGCCAGATCAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTT 23777
|| |||||||||||| | |||| || || || |||||| | ||||| | || || ||
Sbjct 41836 TCCACCAGATCAACAGAGACTAATCTTCGCTGGAAAACAATTAGAAGATGGTCGAACATT 41777
Query 23778 AGGCGATTACAACATACAAAAAGA 23801
|| |||||||| ||||||||
Sbjct 41776 GTCTGACTACAACATCCAAAAAGA 41753
>seq7081
Length=134943
Score = 114 bits (126), Expect = 9e-21
Identities = 156/218 (72%), Gaps = 0/218 (0%)
Strand=Plus/Minus
Query 23617 ATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACGGACACT 23676
|| ||| | ||||| | || || |||||||| || ||||| |||| || ||||||
Sbjct 118783 ATATTCATGAAAACTTTGACCGGTAAAACGATTACACTCGAGGTTGCATCAGGTGACACT 118724
Query 23677 GTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAACAGCGT 23736
|||||| | ||| ||| ||| || |||||||| | || ||||||||||| |
Sbjct 118723 ATTGAAAAGGTGAAAGCAAAGATTCAAGATAAAGAAGGATTTCCTCCAGATCAACAAAGA 118664
Query 23737 TTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAACATACAA 23796
| || ||||| ||||||||| | ||||| ||||| ||||| ||||| || || | |
Sbjct 118663 CTCATTTTTGCTGGCAAACAATTAGAAGATGAACGTACTTTGTCTGATTATAATATTCGA 118604
Query 23797 AAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGG 23834
|| || || ||| | ||||| |||||| | || ||||
Sbjct 118603 AAGGAATCTACACTCCATTTGGTTTTACGATTAAGAGG 118566
>seq3336
Length=143284
Score = 113 bits (124), Expect = 3e-20
Identities = 175/246 (71%), Gaps = 3/246 (1%)
Strand=Plus/Minus
Query 23596 AATTAATTACTTAAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTC 23655
|||||||| | ||||||||||| || |||||||| || || || || || || ||| |
Sbjct 130803 AATTAATTCTTAAAAATGCAGATATTTGTTAAAACTCTTACTGGTAAGACAATAACTTTG 130744
Query 23656 GAAGTTGACTCCACGGACACTGTTG-AAATATTAAAACAAAAAATTGCTGACAAAGAAGG 23714
|||||||| || | || || | | |||||| || | || ||| ||||||||| |
Sbjct 130743 GAAGTTGAATCAAGCGATACAATCGAAAATATGAAGGC-TAAGATTCAGGACAAAGAA-G 130686
Query 23715 TGTACCGCCAGATCAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCAC 23774
| | || |||||||| | ||||| |||||||| || ||| | || || | || ||
Sbjct 130685 AATTCTACCTGATCAACAAAGATTAATTTTTGCCGGAAAGCAATTAGAGGATGGTCGAAC 130626
Query 23775 TTTAGGCGATTACAACATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGG 23834
|||| |||||| || || || ||||| || || | || |||||| || | || ||||
Sbjct 130625 TTTATCCGATTATAATATTCAGAAAGAATCAACTCTCCACTTAGTTCTATGATTAAGAGG 130566
Query 23835 AGGATC 23840
|| ||
Sbjct 130565 CGGTTC 130560
Score = 109 bits (120), Expect = 4e-19
Identities = 174/246 (71%), Gaps = 3/246 (1%)
Strand=Plus/Minus
Query 23596 AATTAATTACTTAAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTC 23655
|||||||| | ||||||||||| || |||||||| || || || || || || ||| |
Sbjct 129293 AATTAATTCTTAAAAATGCAGATATTTGTTAAAACTCTTACTGGTAAGACAATAACTTTG 129234
Query 23656 GAAGTTGACTCCACGGACACTGTTG-AAATATTAAAACAAAAAATTGCTGACAAAGAAGG 23714
|||||||| || | || || | | |||||| || | || ||| ||||||||| |
Sbjct 129233 GAAGTTGAATCAAGCGATACAATCGAAAATATGAAGGC-TAAGATTCAGGACAAAGAA-G 129176
Query 23715 TGTACCGCCAGATCAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCAC 23774
| | || |||||||| | ||||| |||||||| || ||| | || || | || ||
Sbjct 129175 AATTCTACCTGATCAACAAAGATTAATTTTTGCCGGAAAGCAATTAGAGGATGGTCGAAC 129116
Query 23775 TTTAGGCGATTACAACATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGG 23834
|||| |||||| || || || ||||| || || | || ||||| || | || ||||
Sbjct 129115 TTTATCCGATTATAATATTCAGAAAGAATCAACTCTCCACTTAGTCCTATGATTAAGAGG 129056
Query 23835 AGGATC 23840
|| ||
Sbjct 129055 CGGTTC 129050
>seq4043
Length=66004
Score = 86.0 bits (94), Expect = 4e-12
Identities = 143/207 (69%), Gaps = 0/207 (0%)
Strand=Plus/Plus
Query 23617 ATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACGGACACT 23676
|| || || ||||| | | || |||||||| || ||||| |||| || |||||
Sbjct 59801 ATATTTGTGAAAACTTTGAACGGTAAAACGATTACACTCGAGGTTGCATCAGGTGACACC 59860
Query 23677 GTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAACAGCGT 23736
| |||| | | | ||| ||| || |||||||| | || || ||||||||
Sbjct 59861 ATGGAAAAGGTGAGAGCAAAGATTCAAGATAAAGAAGGATTTCCTCCCGATCAACAAAAA 59920
Query 23737 TTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAACATACAA 23796
| || ||||||||||||||| | ||||| | ||| ||||| ||||| || || |||
Sbjct 59921 CTCATTTTTGCCGGCAAACAATTAGAAGATGGACGTACTTTGTCGGATTATAATATTCAA 59980
Query 23797 AAAGAGTCCACATTACATTTAGTTTTA 23823
|| || || ||| | ||||| | ||||
Sbjct 59981 AAGGAATCTACACTCCATTTGGGTTTA 60007
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 337956944653256
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |