Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schmidtea_20mediterranea_20[genbank_20GCA_5F000691995.1_202014-05- 30] 12,782 sequences; 700,725,851 total letters Query= NC_029997.1 Length=105667 Score E Sequences producing significant alignments: (Bits) Value seq10343 170 1e-37 seq62 154 1e-32 seq9680 131 1e-25 seq7081 114 9e-21 seq3336 113 3e-20 seq4043 86.0 4e-12 >seq10343 Length=31290 Score = 170 bits (188), Expect = 1e-37 Identities = 179/233 (77%), Gaps = 2/233 (1%) Strand=Plus/Plus Query 23606 TTAAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACT 23665 ||||||||||||| || |||||||| | || || ||||| || || || |||||||| | Sbjct 25555 TTAAAATGCAGATCTTTGTTAAAACATTAACAGGGAAAACTATAACACTTGAAGTTGAGT 25614 Query 23666 CCACGGACACTGTTG-AAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCA 23724 | | || || ||| |||| ||||| | ||| ||| || |||||||| | || ||| Sbjct 25615 CATCTGATTCTATTGAAAATGTTAAATC-AAAGATTCAAGATAAAGAAGGAATTCCACCA 25673 Query 23725 GATCAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGAT 23784 || ||||||||||| || ||||| ||||| ||| ||||||| | || |||||| ||| Sbjct 25674 GACCAACAGCGTTTGATTTTTGCTGGCAAGCAATTGGAAGATGGTCGTACTTTATCAGAT 25733 Query 23785 TACAACATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGG 23837 || || || ||||||||||| ||||| ||||| |||||| | || ||||||| Sbjct 25734 TATAATATTCAAAAAGAGTCAACATTGCATTTGGTTTTACGATTAAGAGGAGG 25786 >seq62 Length=83120 Score = 154 bits (170), Expect = 1e-32 Identities = 166/219 (76%), Gaps = 2/219 (1%) Strand=Plus/Plus Query 23603 TACTTAAAA--TGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGT 23660 || |||||| |||| ||||| || || || || ||||| ||||| || || || ||||| Sbjct 2163 TATTTAAAACATGCAAATTTTTGTGAAGACTCTTACGGGTAAAACAATAACCCTTGAAGT 2222 Query 23661 TGACTCCACGGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACC 23720 ||| || | || || |||||| ||||| |||||| ||||||||||| | || Sbjct 2223 TGAATCTTCCGATACAATTGAAAATGTAAAAGCCAAAATTCAAGACAAAGAAGGCATTCC 2282 Query 23721 GCCAGATCAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGG 23780 || ||||| || || || || |||||||| |||||| | ||||||| ||| |||||| Sbjct 2283 TCCTGATCAGCAACGATTGATTTTTGCCGGAAAACAATTAGAAGACGGACGAACTTTATC 2342 Query 23781 CGATTACAACATACAAAAAGAGTCCACATTACATTTAGT 23819 |||||||| || || ||||| |||||||||||| |||| Sbjct 2343 TGATTACAATATTCAGAAAGAATCCACATTACATCTAGT 2381 >seq9680 Length=90248 Score = 131 bits (144), Expect = 1e-25 Identities = 153/204 (75%), Gaps = 2/204 (1%) Strand=Plus/Minus Query 23599 TAATTACTTAAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAA 23658 ||||| || |||||||||||| ||||||||||| ||||| ||||| || || || ||| Sbjct 41955 TAATTTTGTAGAATGCAGATTTTTGTTAAAACCCTAACGGGTAAAACAATTACACTTGAA 41896 Query 23659 GTTGACTCCACGGACACTGTTGAAA-TATTAAAACAAAAAATTGCTGACAAAGAAGGTGT 23717 ||||| || | || || |||||| | ||||| | |||| || ||||| ||||| | Sbjct 41895 GTTGAGTCTTCAGATACCATTGAAAATGTTAAAGCCAAAA-TTCAAGACAAGGAAGGCAT 41837 Query 23718 ACCGCCAGATCAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTT 23777 || |||||||||||| | |||| || || || |||||| | ||||| | || || || Sbjct 41836 TCCACCAGATCAACAGAGACTAATCTTCGCTGGAAAACAATTAGAAGATGGTCGAACATT 41777 Query 23778 AGGCGATTACAACATACAAAAAGA 23801 || |||||||| |||||||| Sbjct 41776 GTCTGACTACAACATCCAAAAAGA 41753 >seq7081 Length=134943 Score = 114 bits (126), Expect = 9e-21 Identities = 156/218 (72%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 23617 ATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACGGACACT 23676 || ||| | ||||| | || || |||||||| || ||||| |||| || |||||| Sbjct 118783 ATATTCATGAAAACTTTGACCGGTAAAACGATTACACTCGAGGTTGCATCAGGTGACACT 118724 Query 23677 GTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAACAGCGT 23736 |||||| | ||| ||| ||| || |||||||| | || ||||||||||| | Sbjct 118723 ATTGAAAAGGTGAAAGCAAAGATTCAAGATAAAGAAGGATTTCCTCCAGATCAACAAAGA 118664 Query 23737 TTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAACATACAA 23796 | || ||||| ||||||||| | ||||| ||||| ||||| ||||| || || | | Sbjct 118663 CTCATTTTTGCTGGCAAACAATTAGAAGATGAACGTACTTTGTCTGATTATAATATTCGA 118604 Query 23797 AAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGG 23834 || || || ||| | ||||| |||||| | || |||| Sbjct 118603 AAGGAATCTACACTCCATTTGGTTTTACGATTAAGAGG 118566 >seq3336 Length=143284 Score = 113 bits (124), Expect = 3e-20 Identities = 175/246 (71%), Gaps = 3/246 (1%) Strand=Plus/Minus Query 23596 AATTAATTACTTAAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTC 23655 |||||||| | ||||||||||| || |||||||| || || || || || || ||| | Sbjct 130803 AATTAATTCTTAAAAATGCAGATATTTGTTAAAACTCTTACTGGTAAGACAATAACTTTG 130744 Query 23656 GAAGTTGACTCCACGGACACTGTTG-AAATATTAAAACAAAAAATTGCTGACAAAGAAGG 23714 |||||||| || | || || | | |||||| || | || ||| ||||||||| | Sbjct 130743 GAAGTTGAATCAAGCGATACAATCGAAAATATGAAGGC-TAAGATTCAGGACAAAGAA-G 130686 Query 23715 TGTACCGCCAGATCAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCAC 23774 | | || |||||||| | ||||| |||||||| || ||| | || || | || || Sbjct 130685 AATTCTACCTGATCAACAAAGATTAATTTTTGCCGGAAAGCAATTAGAGGATGGTCGAAC 130626 Query 23775 TTTAGGCGATTACAACATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGG 23834 |||| |||||| || || || ||||| || || | || |||||| || | || |||| Sbjct 130625 TTTATCCGATTATAATATTCAGAAAGAATCAACTCTCCACTTAGTTCTATGATTAAGAGG 130566 Query 23835 AGGATC 23840 || || Sbjct 130565 CGGTTC 130560 Score = 109 bits (120), Expect = 4e-19 Identities = 174/246 (71%), Gaps = 3/246 (1%) Strand=Plus/Minus Query 23596 AATTAATTACTTAAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTC 23655 |||||||| | ||||||||||| || |||||||| || || || || || || ||| | Sbjct 129293 AATTAATTCTTAAAAATGCAGATATTTGTTAAAACTCTTACTGGTAAGACAATAACTTTG 129234 Query 23656 GAAGTTGACTCCACGGACACTGTTG-AAATATTAAAACAAAAAATTGCTGACAAAGAAGG 23714 |||||||| || | || || | | |||||| || | || ||| ||||||||| | Sbjct 129233 GAAGTTGAATCAAGCGATACAATCGAAAATATGAAGGC-TAAGATTCAGGACAAAGAA-G 129176 Query 23715 TGTACCGCCAGATCAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCAC 23774 | | || |||||||| | ||||| |||||||| || ||| | || || | || || Sbjct 129175 AATTCTACCTGATCAACAAAGATTAATTTTTGCCGGAAAGCAATTAGAGGATGGTCGAAC 129116 Query 23775 TTTAGGCGATTACAACATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGG 23834 |||| |||||| || || || ||||| || || | || ||||| || | || |||| Sbjct 129115 TTTATCCGATTATAATATTCAGAAAGAATCAACTCTCCACTTAGTCCTATGATTAAGAGG 129056 Query 23835 AGGATC 23840 || || Sbjct 129055 CGGTTC 129050 >seq4043 Length=66004 Score = 86.0 bits (94), Expect = 4e-12 Identities = 143/207 (69%), Gaps = 0/207 (0%) Strand=Plus/Plus Query 23617 ATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACGGACACT 23676 || || || ||||| | | || |||||||| || ||||| |||| || ||||| Sbjct 59801 ATATTTGTGAAAACTTTGAACGGTAAAACGATTACACTCGAGGTTGCATCAGGTGACACC 59860 Query 23677 GTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAACAGCGT 23736 | |||| | | | ||| ||| || |||||||| | || || |||||||| Sbjct 59861 ATGGAAAAGGTGAGAGCAAAGATTCAAGATAAAGAAGGATTTCCTCCCGATCAACAAAAA 59920 Query 23737 TTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAACATACAA 23796 | || ||||||||||||||| | ||||| | ||| ||||| ||||| || || ||| Sbjct 59921 CTCATTTTTGCCGGCAAACAATTAGAAGATGGACGTACTTTGTCGGATTATAATATTCAA 59980 Query 23797 AAAGAGTCCACATTACATTTAGTTTTA 23823 || || || ||| | ||||| | |||| Sbjct 59981 AAGGAATCTACACTCCATTTGGGTTTA 60007 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 337956944653256