Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schmidtea_20mediterranea_20[genbank_20GCA_5F000691995.1_202014-05- 30] 12,782 sequences; 700,725,851 total letters Query= NC_030656.1 Length=133492 Score E Sequences producing significant alignments: (Bits) Value seq2828 244 9e-60 seq388 93.3 4e-14 seq2867 91.5 1e-13 >seq2828 Length=37213 Score = 244 bits (270), Expect = 9e-60 Identities = 425/621 (68%), Gaps = 43/621 (7%) Strand=Plus/Plus Query 4526 TACTAAGTATCCAAACAATAAACACGCAAAATCACAATGCAAACCTTCGTCTCTGCTAAT 4585 |||||| ||| ||||| ||||| |||||||| ||||| | ||||| |||| |||||| Sbjct 28689 TACTAAATATTTAAACATCAAACAAGCAAAATCGCAATGAAGTCCTTCATCTCGGCTAAT 28748 Query 4586 CAGTTCGTTAGAAAACGTTAATCCGGGCATTAAACCTCTCTTTTTAAGCCAAAATATAGC 4645 | |||||| || ||||||||||||||| || | |||||||||||||||||| | Sbjct 28749 TAATTCGTTGCTGAAACATAATCCGGGCATTAATCCACGCTTTTTAAGCCAAAATATCGA 28808 Query 4646 GGCAAATGACCCAGAAAAGAATATGCCTTCTACGGCGGCAAACGCTACTAATCGGGACCC 4705 ||||| ||| || ||||| || || || || ||||| || || | || | || Sbjct 28809 TGCAAAACTACCACTGAAAAATATTCCCTCGACAGCAGCAAATGCAACAACTCTAGTTCC 28868 Query 4706 GAACGAGCTGGCTTTGTCTTTAATCCATTTTAATGCCCAGTTAGCTTTTTTCTTAACGCA 4765 || | | ||| || ||||||| |||||||| | ||||||||||| |||||| Sbjct 28869 AAAAGTGGATTTTTTATCGCTAATCCAACGCAATGCCCATTGAGCTTTTTTCTGAACGCA 28928 Query 4766 CGGAATTGTGTATATAGCGTTAAATAATTTA---CTTTTTTCAA-----------ATGG- 4810 || || || | || || |||||||||||| |||||||| | ||| Sbjct 28929 TGGCATAGTTTCGATGGCATTAAATAATTTATTCCTTTTTTCGAGATAATTTTTTATGAC 28988 Query 4811 ------------------GTCT-TGAAT-------ATAAGTGTCTATTAGTAGGCTATAC 4844 || | || || ||||| || |||| ||| |||| Sbjct 28989 AAAGAAAACTATTACTTTGTTTCTGTATCAGTAACATAAGAATCGATTAATAGAGAATAC 29048 Query 4845 ATTTCAGAATGTATATTTTCTATAGCAATCTGAAATCCGTAAAA-GCATCTAGCTTCTGT 4903 ||||| ||||| || ||||| || ||||| ||||| | |||||| || || |||||| | Sbjct 29049 ATTTCTGAATGAATGTTTTCAATTGCAATTTGAAAACTGTAAAATGCCTC-AGCTTCGGG 29107 Query 4904 TACTTGAACTTCGTTACAAAATCTTTCTACTAAGTTTTCGTTTACTATACCGTCACTGGC 4963 | || ||||| | | |||||||| || | ||||| || || || || |||||||| Sbjct 29108 AATTTTCACTTCTTGAATGAATCTTTCGACGAGATTTTCATTGACAATTCCATCACTGGC 29167 Query 4964 TGCAAAAAACGCCAAAACATGAGATATAAAGTACTGTTCGTCAGGCTTAAGTTTTTTCCA 5023 |||||||| || | ||| |||| || || ||| |||| || || | ||||||||| Sbjct 29168 AGCAAAAAATGCAAGAACGTGAGTAATGAAATACCGTTCATCGTCATTCATTTTTTTCCA 29227 Query 5024 GTGGGGCAAATCTTTAGTTAAATCAACTTCTTCAACAGTCCAAAACGACGCTTCCGCTTT 5083 ||| | |||||||| | ||||| |||||| | ||||||||||| || | | ||||| Sbjct 29228 GTGAGCAAAATCTTTTGATAAATTAACTTCATTTACAGTCCAAAATGAAGATCGAGCTTT 29287 Query 5084 TTTGTACATAGACCAAATATC 5104 || |||| ||| ||||| Sbjct 29288 ATTAAACATTTCCCATATATC 29308 Score = 163 bits (180), Expect = 2e-35 Identities = 211/289 (73%), Gaps = 2/289 (1%) Strand=Plus/Plus Query 4817 AATATAAGTGTCTATTAGTAGGCTATACATTTCAGAATGTATATTTTCTATAGCAATCTG 4876 || ||||| || |||| ||| ||||||||| ||||| || ||||| || ||||| || Sbjct 31101 AACATAAGAATCGATTAATAGAGAATACATTTCTGAATGAATGTTTTCAATTGCAATTTG 31160 Query 4877 AAATCCGTAAAA-GCATCTAGCTTCTGTTACTTGAACTTCGTTACAAAATCTTTCTACTA 4935 ||| | |||||| || || |||||| | | || ||||| | | |||||||| || | Sbjct 31161 AAAACTGTAAAATGCCTC-AGCTTCGGGAATTTTCACTTCTTGAATGAATCTTTCGACGA 31219 Query 4936 AGTTTTCGTTTACTATACCGTCACTGGCTGCAAAAAACGCCAAAACATGAGATATAAAGT 4995 ||||| || || || || |||||||| |||||||| || | ||| |||| || || | Sbjct 31220 GATTTTCATTGACAATTCCATCACTGGCAGCAAAAAATGCAAGAACGTGAGTAATGAAAT 31279 Query 4996 ACTGTTCGTCAGGCTTAAGTTTTTTCCAGTGGGGCAAATCTTTAGTTAAATCAACTTCTT 5055 || |||| || || | |||||||||||| | |||||||| | ||||| |||||| | Sbjct 31280 ACCGTTCATCGTCATTCATTTTTTTCCAGTGAGCAAAATCTTTTGATAAATTAACTTCAT 31339 Query 5056 CAACAGTCCAAAACGACGCTTCCGCTTTTTTGTACATAGACCAAATATC 5104 ||||||||||| || | | ||||| || |||| ||| ||||| Sbjct 31340 TTACAGTCCAAAATGAAGATCGAGCTTTATTAAACATTTCCCATATATC 31388 >seq388 Length=20733 Score = 93.3 bits (102), Expect = 4e-14 Identities = 126/175 (72%), Gaps = 2/175 (1%) Strand=Plus/Minus Query 31772 GTTAAAACCGATATTCAAATTTCTTTACCTTCAGGGTGCTACGGACGAATAGCTCCTAGA 31831 || ||||| |||||||||||| | ||||| ||| || || ||| |||| || |||||| Sbjct 1986 GTGAAAACTGATATTCAAATTGCATTACCAGAAGGTTGTTATGGAAGAATTGCACCTAGA 1927 Query 31832 TCTGGATTGGCAGTTAAACACTTTATCGACGTGGGTGCGGGTGTTATAGATTCAGACTAT 31891 ||| | || ||| | |||||||| || || || || ||||| ||| ||| ||| Sbjct 1926 AGTGGTCTAGCTTGGAAAAATTTTATCGATGTTGGGGCTGGAGTTATTGATCAAGATTAT 1867 Query 31892 AGAGGAAACGTTGGAATTGTGTTGTTTAATTTT--GGAGAAAAATCATACAGTAT 31944 | || || |||||| | | |||||||||||| || ||| || | |||||| Sbjct 1866 CGTGGGAATGTTGGAGTATTATTGTTTAATTTTTCCGACAAAGATTTTCCAGTAT 1812 >seq2867 Length=150518 Score = 91.5 bits (100), Expect = 1e-13 Identities = 161/232 (69%), Gaps = 2/232 (1%) Strand=Plus/Plus Query 4741 CCCAGTTAGCTTTTTTCTTAACGCACGGAATTGTGTATATAGCGTTAAATAATTTACTTT 4800 |||| | || ||||||| ||| | || || || | || || |||||||||||||| | Sbjct 86868 CCCATTGTGCCTTTTTCTGAACTCGTGGCATAGTTTCGATGGCATTAAATAATTTACTCT 86927 Query 4801 TTTCAAATGGGTCTTGAATATAAGTGTCTATTAGTAGGCTATACATTTCAGAATGTATAT 4860 || || || || ||||| || |||| ||| || |||||| ||||| || Sbjct 86928 TTGTTTCTGTATCAATAACATAAGAATCGATTAATAGCGAATGCATTTCTGAATGAATGC 86987 Query 4861 TTTCTATAGCAATCTGAAATCCGTAAAA-GCATCTAGCTTCTGTTACTTGAACTTCGTTA 4919 |||| || | ||| ||||| | |||||| || || |||||| | | || ||||| | | Sbjct 86988 TTTCAATGGTAATTTGAAAACTGTAAAATGCCTC-AGCTTCAGGAATTTTGACTTCTTGA 87046 Query 4920 CAAAATCTTTCTACTAAGTTTTCGTTTACTATACCGTCACTGGCTGCAAAAA 4971 | ||||| || || | ||||| || | || || |||||||| || |||| Sbjct 87047 AAGAATCTCTCGACAAGATTTTCATTGTCAATCCCATCACTGGCAGCGAAAA 87098 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 426983073946406