Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schmidtea_20mediterranea_20[genbank_20GCA_5F000691995.1_202014-05- 30] 12,782 sequences; 700,725,851 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq2828 237 2e-57 seq4321 194 2e-44 >seq2828 Length=37213 Score = 237 bits (262), Expect = 2e-57 Identities = 423/620 (68%), Gaps = 52/620 (8%) Strand=Plus/Plus Query 48123 AAATGTTTAAACATTAAACATGCAAAATCACAATGAAGACCTTCATCTCTACTAATTAAT 48182 |||| ||||||||| ||||| |||||||| |||||||| |||||||||| ||||||||| Sbjct 28693 AAATATTTAAACATCAAACAAGCAAAATCGCAATGAAGTCCTTCATCTCGGCTAATTAAT 28752 Query 48183 TCGTTA--GAAA-ATGTGAGACCGGGCATTAGTCCACGTTTTTTGAGCCAAAATATTGCC 48239 ||||| |||| || | |||||||||| |||||| ||||| ||||||||||| | Sbjct 28753 TCGTTGCTGAAACAT---AATCCGGGCATTAATCCACGCTTTTTAAGCCAAAATATCGAT 28809 Query 48240 GCGAAAGATCCAGAAAAGAATATGCCTTCTACGGCCGCAAATGCGGTAAGTCTCTCTCCG 48299 || ||| ||| || ||||| || || || || |||||||| || ||| ||| Sbjct 28810 GCAAAACTACCACTGAAAAATATTCCCTCGACAGCAGCAAATGCAACAACTCTAGTTCCA 28869 Query 48300 TAACTGGCTTCGTTGTGT---ATCCACCGTTGTGCCCAATCAGCCTTCTTCTTTACACAA 48356 || ||| || || | ||||| || |||||| | ||| || |||| || || Sbjct 28870 AAAGTGGATTTTTTATCGCTAATCCAACGCAATGCCCATTGAGCTTTTTTCTGAACGCAT 28929 Query 48357 GGCATTGTTTCTATAGCATTAAA------------------GAGAAAGtttttttC---- 48394 ||||| ||||| || |||||||| |||| | |||||| Sbjct 28930 GGCATAGTTTCGATGGCATTAAATAATTTATTCCTTTTTTCGAGATAATTTTTTATGACA 28989 Query 48395 ---------ATTGCTATCTTT----------AACGTAAGTATCTATTAAAAGACTATACA 48435 ||| || | ||| ||| |||| ||| ||||| ||| ||||| Sbjct 28990 AAGAAAACTATTACTTTGTTTCTGTATCAGTAACATAAGAATCGATTAATAGAGAATACA 29049 Query 48436 TTTCGGAGTGAATATTTTCAATTGCCATCTGAAATCCGTAAAAACATCTC-GCTTCTGTG 48494 |||| || ||||| ||||||||||| || ||||| | |||||| ||| ||||| | Sbjct 29050 TTTCTGAATGAATGTTTTCAATTGCAATTTGAAAACTGTAAAATGC-CTCAGCTTCGGGA 29108 Query 48495 ATCTGTACCTCCGTACAAAATCGTTCAGCCAAATTCTCATTTACTATTCCATCACTAGCA 48554 || | || || | |||| ||| | | ||| ||||| || ||||||||||| ||| Sbjct 29109 ATTTTCACTTCTTGAATGAATCTTTCGACGAGATTTTCATTGACAATTCCATCACTGGCA 29168 Query 48555 GCAAAAAATGCTAATACATGTTTAATAAAATATTTTTCGTTGGAAGTCAGTTTATTCCAG 48614 ||||||||||| | || || |||| ||||| ||| | | | ||| ||| |||||| Sbjct 29169 GCAAAAAATGCAAGAACGTGAGTAATGAAATACCGTTCATCGTCATTCATTTTTTTCCAG 29228 Query 48615 TCATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAAAATGATGCCTCTGCTTTT 48674 | | | ||||||||||| || ||||| | | ||||||||||| | ||||| Sbjct 29229 TGAGCAAAATCTTTTGATAAATTAACTTCATTTACAGTCCAAAATGAAGATCGAGCTTTA 29288 Query 48675 TTATACATATTCCATATATC 48694 ||| |||| | ||||||||| Sbjct 29289 TTAAACATTTCCCATATATC 29308 Score = 158 bits (174), Expect = 2e-33 Identities = 214/296 (72%), Gaps = 2/296 (1%) Strand=Plus/Plus Query 48400 TATCTTTAACGTAAGTATCTATTAAAAGACTATACATTTCGGAGTGAATATTTTCAATTG 48459 |||| |||| |||| ||| ||||| ||| ||||||||| || ||||| |||||||||| Sbjct 31094 TATCAGTAACATAAGAATCGATTAATAGAGAATACATTTCTGAATGAATGTTTTCAATTG 31153 Query 48460 CCATCTGAAATCCGTAAAAACATCTC-GCTTCTGTGATCTGTACCTCCGTACAAAATCGT 48518 | || ||||| | |||||| ||| ||||| | || | || || | |||| | Sbjct 31154 CAATTTGAAAACTGTAAAATGC-CTCAGCTTCGGGAATTTTCACTTCTTGAATGAATCTT 31212 Query 48519 TCAGCCAAATTCTCATTTACTATTCCATCACTAGCAGCAAAAAATGCTAATACATGTTTA 48578 || | | ||| ||||| || ||||||||||| |||||||||||||| | || || || Sbjct 31213 TCGACGAGATTTTCATTGACAATTCCATCACTGGCAGCAAAAAATGCAAGAACGTGAGTA 31272 Query 48579 ATAAAATATTTTTCGTTGGAAGTCAGTTTATTCCAGTCATTGATATCTTTTGATATATCT 48638 || ||||| ||| | | | ||| ||| ||||||| | | ||||||||||| || Sbjct 31273 ATGAAATACCGTTCATCGTCATTCATTTTTTTCCAGTGAGCAAAATCTTTTGATAAATTA 31332 Query 48639 ACTTCTTCAGCTGTCCAAAATGATGCCTCTGCTTTTTTATACATATTCCATATATC 48694 ||||| | | ||||||||||| | ||||| ||| |||| | ||||||||| Sbjct 31333 ACTTCATTTACAGTCCAAAATGAAGATCGAGCTTTATTAAACATTTCCCATATATC 31388 >seq4321 Length=90450 Score = 194 bits (214), Expect = 2e-44 Identities = 526/792 (66%), Gaps = 20/792 (3%) Strand=Plus/Plus Query 77682 ATAGATGCTAGATTACAAACTGCTACCTCATTAGCGTTGGCATATTGTATTATCTCGGTA 77741 || || || | ||| ||||| |||| |||| || ||||| || || || || Sbjct 81357 ATCGAAGCCAAATTGCAAACAGCTATTTCATCAGGAGAACTATATTCTACAATTTCTGTG 81416 Query 77742 CATAGATTACTACATTTGATAGTGCCCAGATTTTGTTGGTTGCTCTTTTTATTGCATGAG 77801 || | ||| || |||||||| || || | || || || || ||| |||||| | | Sbjct 81417 CACAAATTGCTGCATTTGATCGTTCCTAAATGCTGATGATTTGACTTGGCATTGCAGGCG 81476 Query 77802 TCCTTATAAAGAATAAACGGAGTCCCGGTTTCAATCTGTGATTCGATAATAGATTTCCAG 77861 ||||| || || ||| | ||||| |||||||| || ||||| |||| || |||||| Sbjct 81477 TCCTTGTATAGCATATAAGGAGTTCCGGTTTCGATTTGTGAATCGAGGATTTCTTTCCAC 81536 Query 77862 ACGACTCTAGCTTTTATCATAG-ATTTGT-ATCGCCTCTCTCTTTCATATTGAGTATATA 77919 | | ||||||||| ||| | |||| ||| ||| | |||| ||||| ||| | Sbjct 81537 AAAATTCTAGCTTTAATCGTTTTATTTCCCATCCCCTTT-TCTT-CATATAATTCATAGA 81594 Query 77920 GCCGTTCAAATTCATCTCCCCAAACATCATCCAATCCAGGGCATTCATTTGGGCACATCA 77979 | ||||| | |||||||| |||| | ||||| |||| || ||| ||||| Sbjct 81595 GTTTGTCAAACTTTTCTCCCCAGCATTCATGAAGTCCAGCACATTTATGAGGGTCCATCA 81654 Query 77980 ATGACCAGTCACCATCTTCCTTAACTCGTTTCATAAAGAGATCAGGTATCCATAGAGCAA 78039 ||| ||| | ||||| | |||||||||||| || | ||| || ||||| | ||| Sbjct 81655 ATGTCCAATTCCCATCACTTTGAACTCGTTTCATGAATAAATCTGGAATCCACAAAGCGC 81714 Query 78040 TAAATAGATCTCGGGTTCTATGTTC--TTCATTTCCTGTATTCTTTTTA---AGATCGAG 78094 ||||| ||||| | || | ||| ||||| ||| | |||||| | || | Sbjct 81715 AAAATAAATCTCTAG--CTTTTTTCGATTCATCTCC---GTGGTTTTTACGCAATTCCAA 81769 Query 78095 AAACTCCATAATATCAGAATGCCATGGTTCTAGATATATTGCCATAACTCCAGGTCGTTT 78154 ||| |||| || |||||||||||||| || | ||| || || | | || ||||| || Sbjct 81770 AAATTCCAATATGTCAGAATGCCATGGCTCAATATAAATGGCGAATGCACCGGGTCGCTT 81829 Query 78155 ATTACCTCCCTGATCTATATATCTGGCGGTGTTATTATAAACTCTCAACATTGGAATAAT 78214 ||| || || || || | || | || | | |||| | || | ||||||| | | Sbjct 81830 ATTTCCACCTTGGTCGACGTAACGAGCTGCATAATTAAATACCTGGAGCATTGGAGTTAA 81889 Query 78215 ACCGTTAGATGTTCCATTTGTTCCAGAAATATAACTTCCACTTGCGCGAATATTACTAAT 78274 || || ||| |||||||||||| || |||| | || | |||| | || Sbjct 81890 TCCATTCGATACACCATTTGTTCCATTGATTGGTGATCCAGTCGCTCTAATACAATGAAC 81949 Query 78275 GGATATCCCTATTCCTCCTGCCATCTTAGATATTAGAGCGCAACGTTTCAATGTATCGTA 78334 || || || || || || ||||| || ||||| || ||| | ||| | Sbjct 81950 ATTTAAACCGATACCACCAGCATATTTAGAAATAAGAGCACATTCTTTAAGAGTACTAAA 82009 Query 78335 GATACCCTCTATACTGTCATCCATCA-TGTTAAGAAGAAAACAGCTAGACATTTGATGAT 78393 || || || ||||||||||| ||| |||||| || ||||| ||||| | |||| || Sbjct 82010 TATTCCATCAATACTGTCATCTTTCATTGTTAA-TAGGAAACAACTAGAGAGTTGACCAT 82068 Query 78394 GAACAGT--TCCTGCATTAAATAATGTCGGAGATGCATGCGTAAACCATTTTTCAGAAAG 78451 || | || |||||||||||||| ||||| || || |||||||||| || || | Sbjct 82069 --ACTTTAACCCAGCATTAAATAATGTTGGAGAAGCGTGTATAAACCATTTCTCTGACAT 82126 Query 78452 TAGATTGTATGT 78463 || ||| || || Sbjct 82127 TAAATTATAAGT 82138 Score = 123 bits (136), Expect = 3e-23 Identities = 215/307 (70%), Gaps = 7/307 (2%) Strand=Plus/Plus Query 77313 ACATCCCAAAGATCGTATTGTAGAATTCCGTTACTAGCATATGATCCATTATATGTTTCA 77372 |||| ||| | ||| || |||| ||| |||||| | || || |||||||||||| Sbjct 79815 ACATTCCACATATCAGGCTGGAGAACTCCTTTACTAACCGGAGAGCCTTTATATGTTTCA 79874 Query 77373 TAAGGTCC-TTCTGTTTCAGCTAGTTCACAACTCGCTTCCAATGCTCCGTAATAAATTGT 77431 |||| ||| || |||| |||| |||||| | || | || || ||||||| || Sbjct 79875 TAAGTTCCAAACTTTTTC-GCTAATTCACACGACTTTTTAAGAGCACCAAAATAAATAGT 79933 Query 77432 TTCGAAAATCTTCTTATTGAGATCTTG-TGCTTCAATACTATCAAACGGATAATGTAAAA 77490 || ||||| |||||| | || ||| || ||| ||| ||||| ||||| | || | Sbjct 79934 CTCAAAAATTCGCTTATTCA-ATTTTGCAGCCTCATCACTTTCAAATGGATAGCGCAACA 79992 Query 77491 GAATAAAGGCATCTGCTAATCCCTGAACTCCAATACCAATAGGTCTATGTCTCTTATTGG 77550 ||| |||| || | || ||||||||||| ||||| || || ||||| ||||| Sbjct 79993 ATGCAAAAACATCGGCCAGACCTTGAACTCCAATCCCAATTGGCCTGTGTCTTAAATTGG 80052 Query 77551 AAATTTTAGCTTCTGGAATAGGATAATAATTAATGTCTATAATTTTATTGAG---ATTTC 77607 | || ||||||| || | ||||||| ||| || || ||||| || || || |||| Sbjct 80053 ATGTTCTAGCTTCCGGTAATGGATAATGATTTATATCAATAATCTTGTTAAGATTATTTG 80112 Query 77608 TAACAAC 77614 ||||||| Sbjct 80113 TAACAAC 80119 Score = 122 bits (134), Expect = 1e-22 Identities = 239/351 (68%), Gaps = 3/351 (1%) Strand=Plus/Plus Query 76901 ATGAATATTCATCGACTGACTTTGATCGATGAAAGCTCCTCTATCAGCCGCCATTTTTAT 76960 ||| | |||||| ||||||||||| || || | |||| || || |||| |||||| Sbjct 79347 ATGGAAATTCATACTTTGACTTTGATCAATAAACGGAGCTCTGTCGGCAGCCAATTTTAT 79406 Query 76961 AATGGTCTTTTGAGGAATTTCCCAAATAGTTTTGAAAACTTGTTTGATATCATCTGGAAG 77020 || | |||| |||||||||||| |||||| || | | ||| || ||||| ||||| Sbjct 79407 GATAACCGATTGATGAATTTCCCAAACAGTTTTAAATAACTCTTTCATTTCATCGGGAAG 79466 Query 77021 -GTTTG--TATTTTGAATGGAACCACCATCTGATATAATTGTATTCTTTATATCATCATT 77077 ||| ||||||| |||||||||| || | ||||| | |||||| |||||||| Sbjct 79467 ACCTTGGATATTTTGTATGGAACCACGATTGGCAATAATGGCATTCTTCATATCATCTGA 79526 Query 77078 CCACAATTTCCTCTCTGTTAAAACTCTAAGGAGATGAGGATTAACTATTTGAAATTCTCC 77137 ||||| ||| | | | | || || | || ||| || | |||||| || Sbjct 79527 CCACAGATTCAACCGAATCAGATCTTCAATTAAATATCTATTTACAACAACAAATTCCCC 79586 Query 77138 AGACAATACTCTACGAGTGTAAATATTACTGGTATATGGTTCCACAGATTCATTGTTTCC 77197 || |||| | || ||||| || | | | || | | ||||||||||||| Sbjct 79587 GCTTAAAACTCGTCTTAAATAGATATTGCTTGAGAACGCCTCAAAACATTCATTGTTTCC 79646 Query 77198 CAAAATTTGAGCAGTAGAAGCAGTTGGCATAGGTGCCACCAATAAACTATT 77248 | ||| |||| |||| || ||||||||||| || || ||||| ||||| Sbjct 79647 GAGAATCTGAGAAGTACTCGCTGTTGGCATAGGAGCAACTAATAAGCTATT 79697 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694557809292480