Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schmidtea_20mediterranea_20[genbank_20GCA_5F000691995.1_202014-05- 30] 12,782 sequences; 700,725,851 total letters Query= NC_031048.1 Length=41918 Score E Sequences producing significant alignments: (Bits) Value seq6794 205 2e-48 >seq6794 Length=1050243 Score = 205 bits (226), Expect = 2e-48 Identities = 432/641 (67%), Gaps = 10/641 (2%) Strand=Plus/Plus Query 3869 CCTGCTGATGAAATCATTCACGGTTTCGTAAAAGACATCGTTGGCCAGCGCCGTGGGCTG 3928 || || ||||| || |||||||| || || || || || || || || || || Sbjct 600365 CCAGCGGATGAGATTATTCACGGCTTTTTACCTGAAATTGTGGGGCAAAAGCGCGGTCTC 600424 Query 3929 CCGTGGATGGCAACCGGGCTGTTCCGTATGCGCCACCTGAACGGCATGGAAGATGCCGCG 3988 || |||||||| || ||||| | || ||||| || || ||| | ||||| || ||| Sbjct 600425 CCATGGATGGCGACGGGGCTTTATCGCCTGCGCATGCTCAAAGGCTTTGAAGACGCTGCG 600484 Query 3989 CTGGTGAATGCCCGCGTTGGTGCCAACAAAATGGGGTTCATCGAATGGGATGATGGCAAG 4048 |||||||| || || |||| || |||||||| | || | ||| | || |||| Sbjct 600485 CTGGTGAACGCTCGAATTGGCGCATCGAAAATGGGCGTGATTCAGTGGAAAGACGGCAGA 600544 Query 4049 GGGCCACAATTCGATGAC-----CCGGAAGAATACTACGTTGAAAGC-GAACCGGGTGAA 4102 |||||| | | || ||| ||| || | | |||| || || || || || Sbjct 600545 GGGCCAGAGATGGACGACGAAGACCGCGCCAACTTTGAGATGAACGCAGAGCCTGGGGAG 600604 Query 4103 TTCGAAATCCTGCCTGACGGCGCGCGCCTGAAAGAGTGGAACCCGCAATACCCTAGCGGT 4162 || ||||||||| || |||||| || ||| ||||||||||||||||| |||||| Sbjct 600605 TTTTCAATCCTGCCGGAGGGCGCGGAATTGTCAGAATGGAACCCGCAATACCCCAGCGGT 600664 Query 4163 GAATTCGCCAGTTTCACCAAACAGATGCTGCGCGGCATTTCTGCCGGGTTCGGTGTGGCT 4222 ||||| || | |||| |||||||||||||| || || || || || ||| | Sbjct 600665 GAATTTATGTTGTTTAACAAAGCCATGCTGCGCGGCATATCGGCGGGCTTTGGCGTGCTT 600724 Query 4223 TACAACAACCTGGCCAACGACCTGGAAGGCGTGAACTATTCCAGCATTCGCCAGGGAACG 4282 |||||||| | ||||||||| | || || || | || ||||| | ||||| ||| Sbjct 600725 TACAACAATTTAGCCAACGACTTAGAGAATGTCAATTTCTCAAGCATCAGGCAGGGGACG 600784 Query 4283 CTAAACGAGCGCGAGAACTGGAAAGAGCTACAGGAATGGTTGATTGAAACGCTGCACCAG 4342 || ||||||||||| | |||||||| | || || ||| | |||||| || ||| Sbjct 600785 TTAGACGAGCGCGAGCATTGGAAAGAAATGCAAGAGTGGCTCATTGAATGTTTGGTGCAG 600844 Query 4343 ACTGTATTTGACGCCTGGCTGCCGCGTGCGCTGCTGGCTGGCCGCATCACCGTTAAGGGC 4402 | || ||||| || ||| |||||| ||||| |||| || | |||| | || || || Sbjct 600845 CCAGTGTTTGAAGCGTGGTTGCCGCTAGCGCTACTGGGCGGGCACATCGCGGTAAATGG- 600903 Query 4403 CGCAGCC--TGAAGCCGGAACGAATTGACCGTTACAGCCTGATTGAATGGCAGCCGCGCC 4460 || ||| ||||| | || || | | || || | | | | ||||| | | | Sbjct 600904 -GCGGCCATTGAAGGCTGAGCGGCTAAAACGCTATGCGCGGGTGGCGTGGCAAGCAAGGC 600962 Query 4461 GCTGGTCATGGGTTGACCCGCAGGCAGATGTCAAAGCCGCC 4501 ||||| ||| | ||||||| ||| || || | |||||| Sbjct 600963 GCTGGCAGTGGATAGACCCGCGGGCGGACGTAGATGCCGCC 601003 Score = 134 bits (148), Expect = 4e-27 Identities = 209/294 (71%), Gaps = 6/294 (2%) Strand=Plus/Plus Query 4836 GCAGCGCGCACCGTAGAACTGGCGTTTTCATCCGAAATCGAGGTTGAACGCTGGTACGGC 4895 || ||||| | || || || || ||||| || ||| || ||||| |||||||||||| Sbjct 601918 GCGGCGCGGAAGGTTGAGCTCGCTTTTTCCTCAGAAGCAGAAGTTGAGCGCTGGTACGGC 601977 Query 4896 ATTGAAATTCTGGACCA-TGACCCGGC-CAG-CGTTCGCCTTGACCGTCTGCGTGACGGC 4952 ||||||| || ||||| | ||| ||| ||||| || ||| | ||||| Sbjct 601978 GTTGAAATCCTCGACCACTCTAGTGGCGCAGTCGTTC---TTAGCCGGATTGTAGACGGT 602034 Query 4953 GGGGCGTTGCTGGTGGACCATGACTGGACCGATCAAGTAGGCGTCATTGAATCCGTCACC 5012 | | | ||||| |||| || || | | | ||| | || ||| |||| || | Sbjct 602035 GCGCCACTGCTGTTGGATCACGATTCGCGCCGCCAATTGGGGGTCGTTGAGAGTGTTTCG 602094 Query 5013 ATCGACGCAGACCGCCGGGGGCGGGCTGTTGTGCGTTTTGGTCGAAGCGCGCGAGCCGAT 5072 || |||||||||||||||||||||||||| ||||| ||||| |||| |||| |||||| Sbjct 602095 ATTGACGCAGACCGCCGGGGGCGGGCTGTGGTGCGCTTTGGGAGAAGTGCGCTGGCCGAT 602154 Query 5073 GAGATTTTCAACGACATCGTTGACGGCATTCGTAAACACGTTTCCGTTGGCTAC 5126 || || ||||| ||||| |||||||| | || || |||||||| || ||| Sbjct 602155 GAAATATTCAATGACATTAAAGACGGCATAAGAAAGCATGTTTCCGTGGGTTAC 602208 Score = 113 bits (124), Expect = 1e-20 Identities = 151/208 (73%), Gaps = 4/208 (2%) Strand=Plus/Plus Query 6492 ATTTGGGAGCCGGGCAACACCATTAACGGTTACCGCGCCGAAGTTACCAACCAGGTGCAG 6551 ||||||||| | ||||||||||| || ||||| | | || | ||||| | | Sbjct 603463 ATTTGGGAGGCTGGCAACACCATAAATGGTTATCAATCTCTTGTGTCTAACCAAATCAAT 603522 Query 6552 GATGGTGACGTGTTCTTTGGCAACTTCGCTGACCTGGTGGTTGGTATGTGGGGCGGTCTG 6611 | ||| |||||||||||||| |||||||| ||| || | |||| ||||||||||| | Sbjct 603523 GCTGGCGACGTGTTCTTTGGTAACTTCGCCGACTTGCTCATTGGCATGTGGGGCGGCTTA 603582 Query 6612 GATATGACTGTTGACCCGTACAGCCTGAGCAAATCCGGTGGC--CTGCGTATCGTTGTAT 6669 || || ||| ||||||||||||| ||| || || || | |||| || ||| Sbjct 603583 GAGCTGCATGTAGACCCGTACAGCCAAAGCCAAAAGGGACGCATCCGCGTGACG--ATAT 603640 Query 6670 TCCAGGACGTTGACTTTGCGGTGCGCCG 6697 |||| ||| |||| ||||| |||||||| Sbjct 603641 TCCAAGACATTGATTTTGCAGTGCGCCG 603668 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 133995658213920