Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schmidtea_20mediterranea_20[genbank_20GCA_5F000691995.1_202014-05- 30] 12,782 sequences; 700,725,851 total letters Query= NC_032111.1 Length=163005 Score E Sequences producing significant alignments: (Bits) Value seq2828 188 7e-43 seq12232 89.7 5e-13 >seq2828 Length=37213 Score = 188 bits (208), Expect = 7e-43 Identities = 395/585 (68%), Gaps = 49/585 (8%) Strand=Plus/Plus Query 23490 TAAATACTTAAACAATAAACATGCAAAATCACAATGTAGGCCTTCATCCCTACTAATCAA 23549 |||||| ||||||| ||||| |||||||| ||||| || |||||||| | ||||| || Sbjct 28692 TAAATATTTAAACATCAAACAAGCAAAATCGCAATGAAGTCCTTCATCTCGGCTAATTAA 28751 Query 23550 TTCATTAGAAAATGTTAATCCTGGCATTAATCCTCGTTTTTTAATCCAAAATATTGCAGC 23609 ||| || || |||||| ||||||||||| || ||||||| ||||||||| | || Sbjct 28752 TTCGTTGCTGAAACATAATCCGGGCATTAATCCACGCTTTTTAAGCCAAAATATCGATGC 28811 Query 23610 AAATGATCCGGAAAAGAAAATACCCTCAACAGCCGCAAAGGCCACAAGACGTGTACCAAA 23669 ||| || || || || ||||| ||||| ||||| || |||| | || ||||| Sbjct 28812 AAAACTACCACTGAAAAATATTCCCTCGACAGCAGCAAATGCAACAACTCTAGTTCCAAA 28871 Query 23670 TGTTGCATTATAATCAGAAATCCAtttttttGTCCAATTAGCCTT--------------- 23714 || | || | ||| |||||| || ||| | ||| || Sbjct 28872 AGTGGATTTTTTATCGCTAATCCAACGCAATGCCCATTGAGCTTTTTTCTGAACGCATGG 28931 Query 23715 CA-ATTTTACA---CACTCAAT-----------TGTTTC-----AATTGCTTTTAAGA-- 23752 || | ||| | || | ||| | |||| |||| ||||| || Sbjct 28932 CATAGTTTCGATGGCATTAAATAATTTATTCCTTTTTTCGAGATAATT--TTTTATGACA 28989 Query 23753 --GAAAAGTTTT----TTCTTCATTATCTGTTATATATGTATCAATTAGTAAACTATACA 23806 ||||| | || | ||| |||| || | ||| | ||| |||| || | ||||| Sbjct 28990 AAGAAAACTATTACTTTGTTTCTGTATCAGTAACATAAGAATCGATTAATAGAGAATACA 29049 Query 23807 TTTCAGAATGAATATTTTCAATAGCAATCTGAAACCCATAAAAA-CATCTAGCTTCAGAC 23865 |||| |||||||| |||||||| ||||| ||||| | ||||| | || |||||| | Sbjct 29050 TTTCTGAATGAATGTTTTCAATTGCAATTTGAAAACTGTAAAATGCCTC-AGCTTCGGGA 29108 Query 23866 AATTGAACATCATTAAAAAATCTTTTAGCTAAATTTTCGTTAACAATACCATCACTAGCA 23925 | || || || | || ||||||| | | |||||| || ||||| |||||||| ||| Sbjct 29109 ATTTTCACTTCTTGAATGAATCTTTCGACGAGATTTTCATTGACAATTCCATCACTGGCA 29168 Query 23926 GCAAAGAAAGCAAGAACATATTTTATAAAATGTCTTTCATCAGTTGATAATTTTTT-CCA 23984 ||||| || |||||||| | | || |||| | |||||| || | ||||||| ||| Sbjct 29169 GCAAAAAATGCAAGAACGTGAGTAATGAAATACCGTTCATC-GTCATTCATTTTTTTCCA 29227 Query 23985 ATCATTAATATCTTTTGATAAATCAACTTCATCAACTGTCCAAAA 24029 | | || |||||||||||||| |||||||| || |||||||| Sbjct 29228 GTGAGCAAAATCTTTTGATAAATTAACTTCATTTACAGTCCAAAA 29272 Score = 154 bits (170), Expect = 2e-32 Identities = 194/261 (74%), Gaps = 4/261 (2%) Strand=Plus/Plus Query 23771 TATCTGTTATATATGTATCAATTAGTAAACTATACATTTCAGAATGAATATTTTCAATAG 23830 |||| || | ||| | ||| |||| || | ||||||||| |||||||| |||||||| | Sbjct 31094 TATCAGTAACATAAGAATCGATTAATAGAGAATACATTTCTGAATGAATGTTTTCAATTG 31153 Query 23831 CAATCTGAAACCCATAAAAA-CATCTAGCTTCAGACAATTGAACATCATTAAAAAATCTT 23889 |||| ||||| | ||||| | || |||||| | | || || || | || |||||| Sbjct 31154 CAATTTGAAAACTGTAAAATGCCTC-AGCTTCGGGAATTTTCACTTCTTGAATGAATCTT 31212 Query 23890 TTAGCTAAATTTTCGTTAACAATACCATCACTAGCAGCAAAGAAAGCAAGAACATATTTT 23949 | | | |||||| || ||||| |||||||| |||||||| || |||||||| | | Sbjct 31213 TCGACGAGATTTTCATTGACAATTCCATCACTGGCAGCAAAAAATGCAAGAACGTGAGTA 31272 Query 23950 ATAAAATGTCTTTCATCAGTTGATAATTTTTT-CCAATCATTAATATCTTTTGATAAATC 24008 || |||| | |||||| || | ||||||| ||| | | || |||||||||||||| Sbjct 31273 ATGAAATACCGTTCATC-GTCATTCATTTTTTTCCAGTGAGCAAAATCTTTTGATAAATT 31331 Query 24009 AACTTCATCAACTGTCCAAAA 24029 |||||||| || |||||||| Sbjct 31332 AACTTCATTTACAGTCCAAAA 31352 >seq12232 Length=11922 Score = 89.7 bits (98), Expect = 5e-13 Identities = 163/232 (70%), Gaps = 9/232 (4%) Strand=Plus/Plus Query 23804 ACATTTCAGAATGAATATTTTCAATAGCAATCTGAAACCCATA--AAAACATCT-AGCTT 23860 ||||||| ||||| || ||||| | | |||| ||| || |||| | || || || Sbjct 6008 ACATTTCTGAATGCATGTTTTCTACATCAATTGTAAAAAAATTGTAAAATACCTCAGATT 6067 Query 23861 CAGACA-ATTGAACATCATTAAAAAATCTTTTAGCTAAATTTTCGTTAACAATACCATCA 23919 ||| | ||||| ||| || ||||||| |||| |||||| | | ||| |||| | Sbjct 6068 CAGGAATATTGACTTTCAG-AATGAATCTTTCGGCTAGATTTTCATATAAAATCCCATTA 6126 Query 23920 CTAGCAGCAAAGAAAGCAAGAACATATTTTATAAAATGTCTTTCATCAGTTGAT--AATT 23977 || ||||| || || |||||||| || | | |||| || ||||| || || | || Sbjct 6127 CTGGCAGCGAAAAAGGCAAGAACGTAAGTATTGAAATATCAATCATC--TTCATTCATTT 6184 Query 23978 TTTTCCAATCATTAATATCTTTTGATAAATCAACTTCATCAACTGTCCAAAA 24029 ||||||||| | || || ||||||||||| | | || | || |||||||| Sbjct 6185 TTTTCCAATGAGCAAAATATTTTGATAAATTATCCTCGTTTACAGTCCAAAA 6236 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 521404679254800