Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Spirometra_20erinaceieuropaei_20[genbank_20GCA_5F000951995.1_202014- 09-26] 482,396 sequences; 1,258,717,181 total letters Query= NC_001132.2 Length=161773 Score E Sequences producing significant alignments: (Bits) Value seq257780 123 3e-23 >seq257780 Length=1265 Score = 123 bits (136), Expect = 3e-23 Identities = 383/592 (65%), Gaps = 37/592 (6%) Strand=Plus/Minus Query 16834 GCAGTTCATTCCTAT-AAGACGTACCGGAAGAGCTTCCGTCAAAAATCGTTGCTCTATAA 16892 ||||||||| || || ||| | || |||||||| || |||| |||| || ||| Sbjct 595 GCAGTTCATGCCGATCAAGTCC-ACAGGAAGAGCGTCAGTCAGAAATTCCACTTCGATAT 537 Query 16893 CAACCGCTTCCTTAATAATACTAGCAACTCGTTCCTCGGACGGTGTATGTTTAAGATGTT 16952 |||| |||||| ||||| | || || |||| || ||| | |||| ||||| Sbjct 536 CAACAGCTTCCCGCATAATCGCTTCTACGCGCTCCTTAGAGGGTTT--GTTTCTGATGTG 479 Query 16953 TA--AACATCAGACATGCGAAATCGCAATGTAATCCCTCGTCTCTGCTGATAAGTTCGTT 17010 | |||| ||||| ||||| || || | |||||| || | ||| || ||||| || Sbjct 478 TCGGAACAGAAGACAAGCGAAGTCAGTGTGAAGTCCCTCATCACGGCTTATTAGTTCATT 419 Query 17011 AGAAAATGTCAACCCGGGCATCTTTCCTCGTTTCTTTAACCAAAATATCGCGGCGAACGA 17070 ||||||||||| ||||| || || ||||| | ||| || || | || ||||| Sbjct 418 GCTGAATGTCAACCCTGGCATAAGCCCACGCTTCTTCAGCCAGAAGATGGACGCAAACGA 359 Query 17071 CCCAGAAAAGAATATACCCTCGACGGATGCAAACGCGATTAATCGTTCGGCGTACGTCGC 17130 |||||||||||| | ||||| |||| |||||| || | | || || | |||| | Sbjct 358 CCCAGAAAAGAAAACCCCCTCTACGGCTGCAAAGGCTACCAGGCGCTCTGGAAACGTGGA 299 Query 17131 GTCTTTGTTACGAATCCATTTCTGCACCCACTCGGCTTTTTGCTTTATGCAATCCATCGT 17190 | | || || |||||| || | |||| || || || | || | || | || Sbjct 298 TTTTGAGTCACCAATCCACTTGAGTGCCCAGTCAGCCTTCTTTTTCACACAGGGAAGGGT 239 Query 17191 TTCTATGGCCTTAA--ATAATTTCTCT----------------TT------------TTC 17220 || || || |||| | || || || || | Sbjct 238 TTGTACTGCGTTAAAGAGAAAGTCGCTAAAAATAAAATAAGAGTTAGAGGAAGTACCGTT 179 Query 17221 CTGTAGG-TCGATTATATACGTATCGATGAGTAGGCTGTACATTTCGGAGTGTATGTTCT 17279 | |||| || | || ||||| |||||||| || ||||| || ||||| || || | Sbjct 178 CGATAGGATCCTTGATGTACGTGTCGATGAGGAGAGAATACATCTCCGAGTGAATATTTT 119 Query 17280 CCATGGCTATCTGAAATCCGTAAAAGCATCGGGCTTCCGCTATTTGAACTTCCACGTAGA 17339 | || || || || ||||| || ||||| || ||||||| | ||| ||||| || Sbjct 118 CGATTGCAATTTGGAATCCATAGAAGCAACGAGCTTCCGGGACTTGTACTTCTTGACTGA 59 Query 17340 ATCGTTCCGCTAGATTTTCGTTCACGATGCCGTCGCTCGCGGCGAAAAACGC 17391 | |||||| | || || ||||| || || |||||||| ||||| ||||| || Sbjct 58 AACGTTCCACAAGGTTCTCGTTGACTATCCCGTCGCTTGCGGCAAAAAATGC 7 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 514424825909280