Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Spirometra_20erinaceieuropaei_20[genbank_20GCA_5F000951995.1_202014-
09-26] 482,396 sequences; 1,258,717,181 total letters
Query= NC_001132.2
Length=161773
Score E
Sequences producing significant alignments: (Bits) Value
seq257780 123 3e-23
>seq257780
Length=1265
Score = 123 bits (136), Expect = 3e-23
Identities = 383/592 (65%), Gaps = 37/592 (6%)
Strand=Plus/Minus
Query 16834 GCAGTTCATTCCTAT-AAGACGTACCGGAAGAGCTTCCGTCAAAAATCGTTGCTCTATAA 16892
||||||||| || || ||| | || |||||||| || |||| |||| || |||
Sbjct 595 GCAGTTCATGCCGATCAAGTCC-ACAGGAAGAGCGTCAGTCAGAAATTCCACTTCGATAT 537
Query 16893 CAACCGCTTCCTTAATAATACTAGCAACTCGTTCCTCGGACGGTGTATGTTTAAGATGTT 16952
|||| |||||| ||||| | || || |||| || ||| | |||| |||||
Sbjct 536 CAACAGCTTCCCGCATAATCGCTTCTACGCGCTCCTTAGAGGGTTT--GTTTCTGATGTG 479
Query 16953 TA--AACATCAGACATGCGAAATCGCAATGTAATCCCTCGTCTCTGCTGATAAGTTCGTT 17010
| |||| ||||| ||||| || || | |||||| || | ||| || ||||| ||
Sbjct 478 TCGGAACAGAAGACAAGCGAAGTCAGTGTGAAGTCCCTCATCACGGCTTATTAGTTCATT 419
Query 17011 AGAAAATGTCAACCCGGGCATCTTTCCTCGTTTCTTTAACCAAAATATCGCGGCGAACGA 17070
||||||||||| ||||| || || ||||| | ||| || || | || |||||
Sbjct 418 GCTGAATGTCAACCCTGGCATAAGCCCACGCTTCTTCAGCCAGAAGATGGACGCAAACGA 359
Query 17071 CCCAGAAAAGAATATACCCTCGACGGATGCAAACGCGATTAATCGTTCGGCGTACGTCGC 17130
|||||||||||| | ||||| |||| |||||| || | | || || | |||| |
Sbjct 358 CCCAGAAAAGAAAACCCCCTCTACGGCTGCAAAGGCTACCAGGCGCTCTGGAAACGTGGA 299
Query 17131 GTCTTTGTTACGAATCCATTTCTGCACCCACTCGGCTTTTTGCTTTATGCAATCCATCGT 17190
| | || || |||||| || | |||| || || || | || | || | ||
Sbjct 298 TTTTGAGTCACCAATCCACTTGAGTGCCCAGTCAGCCTTCTTTTTCACACAGGGAAGGGT 239
Query 17191 TTCTATGGCCTTAA--ATAATTTCTCT----------------TT------------TTC 17220
|| || || |||| | || || || || |
Sbjct 238 TTGTACTGCGTTAAAGAGAAAGTCGCTAAAAATAAAATAAGAGTTAGAGGAAGTACCGTT 179
Query 17221 CTGTAGG-TCGATTATATACGTATCGATGAGTAGGCTGTACATTTCGGAGTGTATGTTCT 17279
| |||| || | || ||||| |||||||| || ||||| || ||||| || || |
Sbjct 178 CGATAGGATCCTTGATGTACGTGTCGATGAGGAGAGAATACATCTCCGAGTGAATATTTT 119
Query 17280 CCATGGCTATCTGAAATCCGTAAAAGCATCGGGCTTCCGCTATTTGAACTTCCACGTAGA 17339
| || || || || ||||| || ||||| || ||||||| | ||| ||||| ||
Sbjct 118 CGATTGCAATTTGGAATCCATAGAAGCAACGAGCTTCCGGGACTTGTACTTCTTGACTGA 59
Query 17340 ATCGTTCCGCTAGATTTTCGTTCACGATGCCGTCGCTCGCGGCGAAAAACGC 17391
| |||||| | || || ||||| || || |||||||| ||||| ||||| ||
Sbjct 58 AACGTTCCACAAGGTTCTCGTTGACTATCCCGTCGCTTGCGGCAAAAAATGC 7
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 514424825909280
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |