Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Spirometra_20erinaceieuropaei_20[genbank_20GCA_5F000951995.1_202014-
09-26] 482,396 sequences; 1,258,717,181 total letters
Query= NC_001266.1
Length=159857
Score E
Sequences producing significant alignments: (Bits) Value
seq257780 122 9e-23
>seq257780
Length=1265
Score = 122 bits (134), Expect = 9e-23
Identities = 311/471 (66%), Gaps = 37/471 (8%)
Strand=Plus/Minus
Query 16193 AACATTAGACACGCGAAGTCGCAATGTAGTCCTTCGTCTCTGCTGATAAGTTCGTTGGAA 16252
|||| ||||| |||||||| || ||||| || || | ||| || ||||| |||
Sbjct 474 AACAGAAGACAAGCGAAGTCAGTGTGAAGTCCCTCATCACGGCTTATTAGTTCATTGCTG 415
Query 16253 AAAGTTAACCCTGGCATTTTTCCTCGTTTCTTTAACCAGAATATCGCAGCAAATGACCCC 16312
|| || ||||||||||| || || ||||| | |||||| || | ||||| |||||
Sbjct 414 AATGTCAACCCTGGCATAAGCCCACGCTTCTTCAGCCAGAAGATGGACGCAAACGACCCA 355
Query 16313 GAAAAGAATATACCCTCAACAGATGCAAAAGCGATTAATCGTTCCGCGTACGTAGCATCT 16372
|||||||| | ||||| || | |||||| || | | || || | |||| | || |
Sbjct 354 GAAAAGAAAACCCCCTCTACGGCTGCAAAGGCTACCAGGCGCTCTGGAAACGTGG-ATTT 296
Query 16373 TTATT-ACGAATCCATTTCTGTACCCATTCGGCTTTTTGTTTTATACAATCCATCGTTTC 16431
| | | || |||||| || || |||| || || || | ||| | ||| | ||||
Sbjct 295 TGAGTCACCAATCCACTTGAGTGCCCAGTCAGCCTTCTTTTTCACACAGGGAAGGGTTTG 236
Query 16432 TATGGCCTTAAACA--ATTTCTCTT---------------TTTCCTGAA-TA----TCGA 16469
|| || ||||| | | || || || ||| || ||||
Sbjct 235 TACTGCGTTAAAGAGAAAGTCGCTAAAAATAAAATAAGAGTTAGAGGAAGTACCGTTCGA 176
Query 16470 TT---------ATATACGTATCAATCAGTAAACTGTACATTTCTGAGTGTATGTTCTCTA 16520
| || ||||| || || || | | ||||| || ||||| || || || |
Sbjct 175 TAGGATCCTTGATGTACGTGTCGATGAGGAGAGAATACATCTCCGAGTGAATATTTTCGA 116
Query 16521 TGGCTATCTGAAATCCATAGAAGCATCGAGCCTCCGCTATTTGTACTTC--CACGTAAAA 16578
| || || || |||||||||||||| ||||| |||| | ||||||||| || |||
Sbjct 115 TTGCAATTTGGAATCCATAGAAGCAACGAGCTTCCGGGACTTGTACTTCTTGACTGAAA- 57
Query 16579 TCGTTCCGCCAGGTTCTCATTCACGATACCGTCACTTGCAGCAAAAAACGC 16629
|||||| | |||||||| || || || ||||| ||||| |||||||| ||
Sbjct 56 -CGTTCCACAAGGTTCTCGTTGACTATCCCGTCGCTTGCGGCAAAAAATGC 7
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 508330596738720
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |