Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Spirometra_20erinaceieuropaei_20[genbank_20GCA_5F000951995.1_202014- 09-26] 482,396 sequences; 1,258,717,181 total letters Query= NC_001266.1 Length=159857 Score E Sequences producing significant alignments: (Bits) Value seq257780 122 9e-23 >seq257780 Length=1265 Score = 122 bits (134), Expect = 9e-23 Identities = 311/471 (66%), Gaps = 37/471 (8%) Strand=Plus/Minus Query 16193 AACATTAGACACGCGAAGTCGCAATGTAGTCCTTCGTCTCTGCTGATAAGTTCGTTGGAA 16252 |||| ||||| |||||||| || ||||| || || | ||| || ||||| ||| Sbjct 474 AACAGAAGACAAGCGAAGTCAGTGTGAAGTCCCTCATCACGGCTTATTAGTTCATTGCTG 415 Query 16253 AAAGTTAACCCTGGCATTTTTCCTCGTTTCTTTAACCAGAATATCGCAGCAAATGACCCC 16312 || || ||||||||||| || || ||||| | |||||| || | ||||| ||||| Sbjct 414 AATGTCAACCCTGGCATAAGCCCACGCTTCTTCAGCCAGAAGATGGACGCAAACGACCCA 355 Query 16313 GAAAAGAATATACCCTCAACAGATGCAAAAGCGATTAATCGTTCCGCGTACGTAGCATCT 16372 |||||||| | ||||| || | |||||| || | | || || | |||| | || | Sbjct 354 GAAAAGAAAACCCCCTCTACGGCTGCAAAGGCTACCAGGCGCTCTGGAAACGTGG-ATTT 296 Query 16373 TTATT-ACGAATCCATTTCTGTACCCATTCGGCTTTTTGTTTTATACAATCCATCGTTTC 16431 | | | || |||||| || || |||| || || || | ||| | ||| | |||| Sbjct 295 TGAGTCACCAATCCACTTGAGTGCCCAGTCAGCCTTCTTTTTCACACAGGGAAGGGTTTG 236 Query 16432 TATGGCCTTAAACA--ATTTCTCTT---------------TTTCCTGAA-TA----TCGA 16469 || || ||||| | | || || || ||| || |||| Sbjct 235 TACTGCGTTAAAGAGAAAGTCGCTAAAAATAAAATAAGAGTTAGAGGAAGTACCGTTCGA 176 Query 16470 TT---------ATATACGTATCAATCAGTAAACTGTACATTTCTGAGTGTATGTTCTCTA 16520 | || ||||| || || || | | ||||| || ||||| || || || | Sbjct 175 TAGGATCCTTGATGTACGTGTCGATGAGGAGAGAATACATCTCCGAGTGAATATTTTCGA 116 Query 16521 TGGCTATCTGAAATCCATAGAAGCATCGAGCCTCCGCTATTTGTACTTC--CACGTAAAA 16578 | || || || |||||||||||||| ||||| |||| | ||||||||| || ||| Sbjct 115 TTGCAATTTGGAATCCATAGAAGCAACGAGCTTCCGGGACTTGTACTTCTTGACTGAAA- 57 Query 16579 TCGTTCCGCCAGGTTCTCATTCACGATACCGTCACTTGCAGCAAAAAACGC 16629 |||||| | |||||||| || || || ||||| ||||| |||||||| || Sbjct 56 -CGTTCCACAAGGTTCTCGTTGACTATCCCGTCGCTTGCGGCAAAAAATGC 7 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 508330596738720